Rmu_sc0004929.1_g000004

Diacylglycerol kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004929.1
OG0000202
Physical Location & Seq
Forward (+)
9209 .. 10395
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004929.1_g000004.1.cds

Sequence Viewer

Length: 1080 bp
atggcattagatgttgcggaattgctgtggagaaagttcttgaagtctctggcagagctagactctgaatctaattcaggttctattactatctctgtcttcaaatcatcaataaaagctctcgtgtctgatttcgaagcaatcaaagatgttgtgaatgagagagacataatgccggagccttattcctactctgaaactatcaatctgctctacaaactcaacgatgcattggctgactgccgagtcttcacacatgagtgtatggagcttaataatgtgatctcacgcttcaactttcgaagatttacttttgtcgcaaaggtaaagagtcgtgctggtgaactgagggcaattggggtagttggtattgctggagtgggtaagaccaccctggttcagaaggttttggagagcaaggaagtgaagcagaagtttaatcatatactttggttacccttttcgttgagtgaggaagaagaacaatatagtaagttcagctttgaaacatgtatctttgatagtaatggccaaatcatggaggcgaggattgttggccttgataagcttctggaaaggctaagccgcctgctgttatcggataaatgctatttgattgagttggatgatgtgtgtcatcggcacattaacattatggaacgcttatgcagcggattgcccaagcataatggtggtgttgtcattgtcactactagattgaaggaagtggctcaaaagctggggaaacaacatagattgcatctggttcatgttaagcctctggacagagagatttgcgggcgtatatttgaggagcaggcgtattccagtagaaaattttcaaacctctcacgtgatgaagctacgagaaagatggaggaacacaaggatcactgccacagtctaccgttggttgcgaagacgatcgcatatacttttgaagtgggatttggaggcgacagatttgaagagagagatggagatcacgaggaggaagtaggaacttttgaagcattggttgaagacgaccagggttcaagaattgctgacctgatccatcatgttcaagaatcttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAGK_acc DAGK_cat NB-ARC

Protein Analysis

359

Amino Acids

41.0

Weight (kDa)

5.83

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28130
fragaria_vesca FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica MD17G1216600.v1.1
prunus_persica Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis pycom17g22110
rosa_chinensis RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AccB7I CCANNNNNTGG 1 cut(s) 538
AccI GTMKAC 1 cut(s) 904
AciI CCGC 4 cut(s) 17, 586, 672, 798
AclWI GGATC 2 cut(s) 897, 1048
AcoI YGGCCR 1 cut(s) 529
AcsI RAATTY 1 cut(s) 836
AcvI CACGTG 1 cut(s) 854
AfiI CCNNNNNNNGG 1 cut(s) 538
AflIII ACRYGT 1 cut(s) 509
AjnI CCWGG 2 cut(s) 393, 1029
AjuI GAANNNNNNNTTGG 2 cut(s) 933, 965
AleI CACNNNNGTG 1 cut(s) 259
AluBI AGCT 7 cut(s) 58, 119, 271, 501, 568, 739, 863
AluI AGCT 7 cut(s) 58, 119, 271, 501, 568, 739, 863
Alw26I GTCTC 2 cut(s) 51, 159
AlwI GGATC 2 cut(s) 897, 1048
AoxI GGCC 2 cut(s) 529, 556
ApeKI GCWGC 1 cut(s) 669
ApoI RAATTY 1 cut(s) 836
Asp700I GAANNNNTTC 1 cut(s) 838
AsuHPI GGTGA 1 cut(s) 353
AsuII TTCGAA 2 cut(s) 135, 301
BalI TGGCCA 1 cut(s) 531
BauI CACGAG 2 cut(s) 122, 986
BbrPI CACGTG 1 cut(s) 854
BbsI GAAGAC 4 cut(s) 91, 241, 926, 1029
BbvI GCAGC 1 cut(s) 681
BccI CCATC 3 cut(s) 868, 971, 1065
BciT130I CCWGG 2 cut(s) 395, 1031
BcoDI GTCTC 2 cut(s) 51, 159
BfaI CTAG 2 cut(s) 59, 714
BisI GCNGC 2 cut(s) 586, 670
BlpI GCTNAGC 1 cut(s) 581
BlsI GCNGC 2 cut(s) 587, 671
Bme1390I CCNGG 2 cut(s) 395, 1031
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 2 cut(s) 395, 1031
BmsI GCATC 2 cut(s) 217, 769
BpiI GAAGAC 4 cut(s) 91, 241, 926, 1029
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpmI CTGGAG 1 cut(s) 396
Bpu1102I GCTNAGC 1 cut(s) 581
Bpu14I TTCGAA 2 cut(s) 135, 301
BsaAI YACGTR 1 cut(s) 854
BsaBI GATNNNNATC 1 cut(s) 981
BsaJI CCNNGG 2 cut(s) 393, 1030
BsaXI ACNNNNNCTCC 2 cut(s) 806, 836
Bsc4I CCNNNNNNNGG 1 cut(s) 538
Bse1I ACTGG 1 cut(s) 828
Bse8I GATNNNNATC 1 cut(s) 981
BseBI CCWGG 2 cut(s) 395, 1031
BseDI CCNNGG 2 cut(s) 393, 1030
BseGI GGATG 1 cut(s) 631
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 1 cut(s) 538
BseMII CTCAG 1 cut(s) 338
BseNI ACTGG 1 cut(s) 828
BseRI GAGGAG 2 cut(s) 827, 1004
BseXI GCAGC 1 cut(s) 681
BseYI CCCAGC 1 cut(s) 739
Bsh1285I CGRYCG 1 cut(s) 927
BshFI GGCC 2 cut(s) 531, 558
BsiEI CGRYCG 1 cut(s) 927
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 538
BsmAI GTCTC 2 cut(s) 51, 159
BsnI GGCC 2 cut(s) 531, 558
Bsp119I TTCGAA 2 cut(s) 135, 301
Bsp143I GATC 5 cut(s) 282, 889, 924, 982, 1053
Bsp1720I GCTNAGC 1 cut(s) 581
BspACI CCGC 4 cut(s) 17, 586, 672, 798
BspANI GGCC 2 cut(s) 531, 558
BspCNI CTCAG 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 2 cut(s) 897, 1048
BspT104I TTCGAA 2 cut(s) 135, 301
BsrI ACTGG 1 cut(s) 828
BssECI CCNNGG 2 cut(s) 393, 1030
BssMI GATC 5 cut(s) 282, 889, 924, 982, 1053
BssSI CACGAG 2 cut(s) 122, 986
Bst2BI CACGAG 2 cut(s) 122, 986
Bst2UI CCWGG 2 cut(s) 395, 1031
Bst4CI ACNGT 2 cut(s) 902, 909
Bst6I CTCTTC 1 cut(s) 963
BstBAI YACGTR 1 cut(s) 854
BstBI TTCGAA 2 cut(s) 135, 301
BstC8I GCNNGC 3 cut(s) 590, 800, 819
BstDEI CTNAG 2 cut(s) 347, 581
BstEII GGTNACC 1 cut(s) 453
BstF5I GGATG 1 cut(s) 631
BstKTI GATC 5 cut(s) 285, 892, 927, 985, 1056
BstMAI GTCTC 2 cut(s) 51, 159
BstMBI GATC 5 cut(s) 282, 889, 924, 982, 1053
BstMCI CGRYCG 1 cut(s) 927
BstMWI GCNNNNNNNGC 1 cut(s) 669
BstNI CCWGG 2 cut(s) 395, 1031
BstNSI RCATGY 1 cut(s) 513
BstPI GGTNACC 1 cut(s) 453
BstSCI CCNGG 2 cut(s) 393, 1029
BstV1I GCAGC 1 cut(s) 681
BstV2I GAAGAC 4 cut(s) 91, 241, 926, 1029
BsuRI GGCC 2 cut(s) 531, 558
BtsCI GGATG 1 cut(s) 631
BtsI GCAGTG 1 cut(s) 892
BtsIMutI CAGTG 1 cut(s) 892
Cac8I GCNNGC 3 cut(s) 590, 800, 819
CviAII CATG 5 cut(s) 257, 510, 538, 770, 1061
DdeI CTNAG 2 cut(s) 347, 581
DpnI GATC 5 cut(s) 284, 891, 926, 984, 1055
DpnII GATC 5 cut(s) 282, 889, 924, 982, 1053
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 529
Eam1104I CTCTTC 1 cut(s) 963
EarI CTCTTC 1 cut(s) 963
Eco72I CACGTG 1 cut(s) 854
Eco91I GGTNACC 1 cut(s) 453
EcoO65I GGTNACC 1 cut(s) 453
EcoRII CCWGG 2 cut(s) 393, 1029
EcoT22I ATGCAT 1 cut(s) 232
FaeI CATG 5 cut(s) 260, 513, 541, 773, 1064
FalI AAGNNNNNCTT 4 cut(s) 295, 327, 485, 517
FatI CATG 5 cut(s) 256, 509, 537, 769, 1060
FauI CCCGC 1 cut(s) 791
FblI GTMKAC 1 cut(s) 904
Fnu4HI GCNGC 2 cut(s) 586, 670
FokI GGATG 1 cut(s) 638
Fsp4HI GCNGC 2 cut(s) 586, 670
FspBI CTAG 2 cut(s) 59, 714
GluI GCNGC 2 cut(s) 586, 670
GsaI CCCAGC 1 cut(s) 743
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 2 cut(s) 531, 558
HapII CCGG 1 cut(s) 176
Hin1II CATG 5 cut(s) 260, 513, 541, 773, 1064
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 5 cut(s) 62, 68, 246, 331, 1070
HpaII CCGG 1 cut(s) 176
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 2 cut(s) 344, 905
Hpy188I TCNGA 5 cut(s) 67, 130, 196, 402, 601
Hpy188III TCNNGA 7 cut(s) 40, 572, 782, 986, 1038, 1067, 1077
Hpy8I GTNNAC 2 cut(s) 344, 905
HpyAV CCTTC 2 cut(s) 397, 715
HpyCH4III ACNGT 2 cut(s) 902, 909
HpyCH4IV ACGT 1 cut(s) 853
HpyCH4V TGCA 3 cut(s) 230, 669, 760
HpyF10VI GCNNNNNNNGC 1 cut(s) 669
HpyF3I CTNAG 2 cut(s) 347, 581
HpySE526I ACGT 1 cut(s) 853
Hsp92II CATG 5 cut(s) 260, 513, 541, 773, 1064
Kzo9I GATC 5 cut(s) 282, 889, 924, 982, 1053
LmnI GCTCC 3 cut(s) 178, 268, 814
Lsp1109I GCAGC 1 cut(s) 681
LweI GCATC 2 cut(s) 217, 769
MaeI CTAG 2 cut(s) 59, 714
MaeII ACGT 1 cut(s) 853
MaeIII GTNAC 2 cut(s) 453, 706
MalI GATC 5 cut(s) 284, 891, 926, 984, 1055
MboI GATC 5 cut(s) 282, 889, 924, 982, 1053
MboII GAAGA 9 cut(s) 91, 241, 315, 488, 491, 931, 980, 1034, 1065
MfeI CAATTG 1 cut(s) 354
MlsI TGGCCA 1 cut(s) 531
MluCI AATT 5 cut(s) 20, 73, 354, 836, 1041
MluNI TGGCCA 1 cut(s) 531
MlyI GAGTC 3 cut(s) 56, 255, 340
MmeI TCCRAC 1 cut(s) 603
Mox20I TGGCCA 1 cut(s) 531
Mph1103I ATGCAT 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 838
MscI TGGCCA 1 cut(s) 531
MseI TTAA 4 cut(s) 273, 438, 648, 774
MslI CAYNNNNRTG 2 cut(s) 259, 690
Msp20I TGGCCA 1 cut(s) 531
MspA1I CMGCKG 1 cut(s) 672
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 2 cut(s) 395, 1031
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 2 cut(s) 395, 1031
MwoI GCNNNNNNNGC 1 cut(s) 669
NdeII GATC 5 cut(s) 282, 889, 924, 982, 1053
NlaIII CATG 5 cut(s) 260, 513, 541, 773, 1064
NlaIV GGNNCC 1 cut(s) 180
NmeAIII GCCGAG 1 cut(s) 269
NmuCI GTSAC 1 cut(s) 706
NsiI ATGCAT 1 cut(s) 232
NspI RCATGY 1 cut(s) 513
NspV TTCGAA 2 cut(s) 135, 301
OliI CACNNNNGTG 1 cut(s) 259
PciI ACATGT 1 cut(s) 509
PdmI GAANNNNTTC 1 cut(s) 838
PfeI GAWTC 2 cut(s) 68, 1070
PflMI CCANNNNNTGG 1 cut(s) 538
PkrI GCNGC 2 cut(s) 587, 671
Ple19I CGATCG 1 cut(s) 927
PleI GAGTC 3 cut(s) 56, 254, 339
PmaCI CACGTG 1 cut(s) 854
PmlI CACGTG 1 cut(s) 854
PpsI GAGTC 3 cut(s) 56, 254, 339
Ppu21I YACGTR 1 cut(s) 854
PscI ACATGT 1 cut(s) 509
Psp6I CCWGG 2 cut(s) 393, 1029
PspCI CACGTG 1 cut(s) 854
PspEI GGTNACC 1 cut(s) 453
PspFI CCCAGC 1 cut(s) 739
PspGI CCWGG 2 cut(s) 393, 1029
PspN4I GGNNCC 1 cut(s) 180
PvuI CGATCG 1 cut(s) 927
RseI CAYNNNNRTG 2 cut(s) 259, 690
SaqAI TTAA 4 cut(s) 273, 438, 648, 774
SatI GCNGC 2 cut(s) 586, 670
Sau3AI GATC 5 cut(s) 282, 889, 924, 982, 1053
SchI GAGTC 3 cut(s) 56, 255, 340
ScrFI CCNGG 2 cut(s) 395, 1031
SfaNI GCATC 2 cut(s) 217, 769
SfuI TTCGAA 2 cut(s) 135, 301
SmiMI CAYNNNNRTG 2 cut(s) 259, 690
Sse9I AATT 5 cut(s) 20, 73, 354, 836, 1041
SsiI CCGC 4 cut(s) 17, 586, 672, 798
SspMI CTAG 2 cut(s) 59, 714
StyD4I CCNGG 2 cut(s) 393, 1029
TaaI ACNGT 2 cut(s) 902, 909
TaiI ACGT 1 cut(s) 856
TaqI TCGA 2 cut(s) 135, 301
TasI AATT 5 cut(s) 20, 73, 354, 836, 1041
TauI GCSGC 1 cut(s) 588
TfiI GAWTC 2 cut(s) 68, 1070
Tru1I TTAA 4 cut(s) 273, 438, 648, 774
Tru9I TTAA 4 cut(s) 273, 438, 648, 774
TscAI CASTG 1 cut(s) 899
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 1 cut(s) 669
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 2 cut(s) 758, 873
TspRI CASTG 1 cut(s) 899
Van91I CCANNNNNTGG 1 cut(s) 538
XapI RAATTY 1 cut(s) 836
XceI RCATGY 1 cut(s) 513
XmiI GTMKAC 1 cut(s) 904
XmnI GAANNNNTTC 1 cut(s) 838
XspI CTAG 2 cut(s) 59, 714
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.