RchiOBHm_Chr7g0229861

Diacylglycerol kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000202
Physical Location & Seq
Forward (+)
53371106 .. 53372409
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20594

Sequence Viewer

Length: 636 bp
ATGCTTTGGTTACCCTTTTCGTTGAGTGAGGAAGAAGAACAATATAGTAAGTTCAGCTTTGAGACATGTATCTTTGATAGTAATGGCCAAATCATAGAGGCGAGGATTGTTGGCCTTGAGAAGCTCCTGGAAAGGCTAAGCCGCCTGCTGTTATCGGATAAATGCTATTTGATTGTGTTGGATGATGTGTGTCATCGGCACATTAACATTATGGAACGCTTATGCAGCGGATTGCCCAAGCATAATGGTGGTGTTGTCATTGTCACTACTAGATTGAAGGAAGTGGCTCAAAAGCTGGGGAAACAACATAGATTGCATCTGGTTCATGTTAAGCCTCTGGACAGAGAGATTTGCGGGCGTATATTTGAGGAGCAGGCTTATTCCATTAGAAAAAGTTCAAACCTCTCACATGATGAGGCTACGAGAAAGATGGAGGAACTCAAGGATCAGTGCCATGGTCTACCGTTGGTTGCGAAGACGATAGCAAATGCTTTTGCAGTGGGATTTGGAGGCGACGGATCTGAAGAGAGAGATGGAGATCACGGGGAGGAAGTAGGAACTTTTGAAGAATCAGTTGAAGACGACCAGGGTTCAAGAATTGCTGACCTGACCCATCATGTTCAAGAATCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAGK_acc DAGK_cat NB-ARC

Protein Analysis

211

Amino Acids

23.85

Weight (kDa)

5.37

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 42 - 127 1.1e-09 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28130
fragaria_vesca FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230 FvH4_6g29230
malus_domestica MD17G1216600.v1.1
prunus_persica Prupe.3G175700_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175800_v2.0.a1 Prupe.3G175900_v2.0.a1 Prupe.3G176000_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.3G176200_v2.0.a1 Prupe.8G030500_v2.0.a1 Prupe.8G030500_v2.0.a1
pyrus_communis pycom17g22110
rosa_chinensis RchiOBHm_Chr1g0372981 RchiOBHm_Chr2g0112801 RchiOBHm_Chr2g0151871 RchiOBHm_Chr2g0151881 RchiOBHm_Chr2g0151891 RchiOBHm_Chr2g0151901 RchiOBHm_Chr2g0151911 RchiOBHm_Chr2g0151921 RchiOBHm_Chr2g0152191 RchiOBHm_Chr2g0152201 RchiOBHm_Chr2g0152211 RchiOBHm_Chr7g0229501 RchiOBHm_Chr7g0229661 RchiOBHm_Chr7g0229861 RchiOBHm_Chr7g0229991 RchiOBHm_Chr7g0230141
rosa_laevigata RLG00000018011 RLG00000018012 RLG00000020585 RLG00000020586 RLG00000020587 RLG00000020616
rosa_multiflora Rmu_co8278997.1_g000001 Rmu_sc0000693.1_g000084 Rmu_sc0000851.1_g000003 Rmu_sc0000851.1_g000022 Rmu_sc0001552.1_g000055 Rmu_sc0001621.1_g000002 Rmu_sc0001708.1_g000015 Rmu_sc0001708.1_g000016 Rmu_sc0001836.1_g000045 Rmu_sc0002351.1_g000009 Rmu_sc0002351.1_g000011 Rmu_sc0002351.1_g000063 Rmu_sc0002666.1_g000014 Rmu_sc0003043.1_g000011 Rmu_sc0004929.1_g000004 Rmu_sc0005294.1_g000007 Rmu_sc0005294.1_g000016 Rmu_sc0005791.1_g000002 Rmu_sc0021251.1_g000001 Rmu_sc0023925.1_g000004 Rmu_sc0034442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095850 Rroxscaffold_2G00096120 Rroxscaffold_2G00131130 Rroxscaffold_2G00132310 Rroxscaffold_3G00230340
rosa_rugosa Rorug02G0174300 Rorug02G0174400 Rorug02G0182700 Rorug02G0429300 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429400 Rorug02G0429500 Rorug02G0431300 Rorug02G0431300 Rorug07G0258400 Rorug07G0258400 Rorug07G0258600 Rorug07G0259000 Rorug07G0259400
rosa_samantha Rh1BG314200 Rh1CG329100 Rh1DG131500 Rh1DG345900 Rh2AG227100 Rh2AG490100 Rh2AG490300 Rh2AG492700 Rh2AG493200 Rh2BG238900 Rh2BG251200 Rh2BG502800 Rh2BG505300 Rh2CG476400 Rh2CG476600 Rh2CG479100 Rh2CG597400 Rh2DG234700 Rh2DG244900 Rh2DG257400 Rh2DG514000 Rh2DG516500 Rh4DG198400 Rh5BG245300 Rh5BG245400 Rh5BG245500 Rh7AG408200 Rh7CG427400 Rh7CG427500 Rh7DG404000 Rh7DG404700 Rh7DG405300
rosa_wichuraiana Rw0G020250 Rw0G020260 Rw2G017530 Rw2G018370 Rw2G018410 Rw2G018560 Rw2G040190 Rw2G040310 Rw2G040490 Rw7G033910 Rw7G034050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 460
AciI CCGC 3 cut(s) 142, 228, 354
AclWI GGATC 2 cut(s) 453, 526
AcoI YGGCCR 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 543
AflIII ACRYGT 1 cut(s) 65
AgsI TTSAA 6 cut(s) 277, 399, 566, 578, 594, 623
AjnI CCWGG 2 cut(s) 126, 585
AluBI AGCT 3 cut(s) 57, 124, 295
AluI AGCT 3 cut(s) 57, 124, 295
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 2 cut(s) 453, 526
AoxI GGCC 2 cut(s) 85, 112
ApeKI GCWGC 1 cut(s) 225
Asp700I GAANNNNTTC 1 cut(s) 394
BalI TGGCCA 1 cut(s) 87
BbsI GAAGAC 2 cut(s) 482, 585
BbvI GCAGC 1 cut(s) 237
BccI CCATC 3 cut(s) 424, 527, 621
BciT130I CCWGG 2 cut(s) 128, 587
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 270
BisI GCNGC 2 cut(s) 142, 226
BlpI GCTNAGC 1 cut(s) 137
BlsI GCNGC 2 cut(s) 143, 227
Bme1390I CCNGG 2 cut(s) 128, 587
BmrFI CCNGG 2 cut(s) 128, 587
BmsI GCATC 1 cut(s) 325
BpiI GAAGAC 2 cut(s) 482, 585
Bpu1102I GCTNAGC 1 cut(s) 137
BpuEI CTTGAG 2 cut(s) 137, 425
BsaBI GATNNNNATC 1 cut(s) 537
BsaJI CCNNGG 2 cut(s) 454, 586
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 2 cut(s) 128, 587
BseDI CCNNGG 2 cut(s) 454, 586
BseGI GGATG 1 cut(s) 187
BseJI GATNNNNATC 1 cut(s) 537
BseRI GAGGAG 1 cut(s) 383
BseXI GCAGC 1 cut(s) 237
BseYI CCCAGC 1 cut(s) 295
BshFI GGCC 2 cut(s) 87, 114
BsmAI GTCTC 1 cut(s) 56
BsnI GGCC 2 cut(s) 87, 114
Bsp143I GATC 3 cut(s) 445, 518, 538
Bsp1720I GCTNAGC 1 cut(s) 137
Bsp19I CCATGG 1 cut(s) 454
BspACI CCGC 3 cut(s) 142, 228, 354
BspANI GGCC 2 cut(s) 87, 114
BspPI GGATC 2 cut(s) 453, 526
BssECI CCNNGG 2 cut(s) 454, 586
BssMI GATC 3 cut(s) 445, 518, 538
BssT1I CCWWGG 1 cut(s) 454
Bst2UI CCWGG 2 cut(s) 128, 587
Bst4CI ACNGT 1 cut(s) 465
Bst6I CTCTTC 1 cut(s) 519
BstC8I GCNNGC 3 cut(s) 146, 356, 375
BstDEI CTNAG 1 cut(s) 137
BstDSI CCRYGG 1 cut(s) 454
BstEII GGTNACC 1 cut(s) 9
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 3 cut(s) 448, 521, 541
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 3 cut(s) 445, 518, 538
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstNI CCWGG 2 cut(s) 128, 587
BstNSI RCATGY 1 cut(s) 69
BstPI GGTNACC 1 cut(s) 9
BstSCI CCNGG 2 cut(s) 126, 585
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 2 cut(s) 482, 585
BstX2I RGATCY 1 cut(s) 518
BstYI RGATCY 1 cut(s) 518
BsuRI GGCC 2 cut(s) 87, 114
BtgI CCRYGG 1 cut(s) 454
BtsCI GGATG 1 cut(s) 187
BtsI GCAGTG 1 cut(s) 504
BtsIMutI CAGTG 2 cut(s) 455, 504
Cac8I GCNNGC 3 cut(s) 146, 356, 375
CviAII CATG 5 cut(s) 66, 326, 410, 455, 617
DdeI CTNAG 1 cut(s) 137
DpnI GATC 3 cut(s) 447, 520, 540
DpnII GATC 3 cut(s) 445, 518, 538
EaeI YGGCCR 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Eco130I CCWWGG 1 cut(s) 454
Eco57I CTGAAG 1 cut(s) 543
Eco91I GGTNACC 1 cut(s) 9
EcoO65I GGTNACC 1 cut(s) 9
EcoRII CCWGG 2 cut(s) 126, 585
EcoT14I CCWWGG 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 454
FaeI CATG 5 cut(s) 69, 329, 413, 458, 620
FalI AAGNNNNNCTT 2 cut(s) 41, 73
FatI CATG 5 cut(s) 65, 325, 409, 454, 616
FauI CCCGC 1 cut(s) 347
FblI GTMKAC 1 cut(s) 460
Fnu4HI GCNGC 2 cut(s) 142, 226
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 2 cut(s) 142, 226
FspBI CTAG 1 cut(s) 270
GluI GCNGC 2 cut(s) 142, 226
GsaI CCCAGC 1 cut(s) 299
HaeIII GGCC 2 cut(s) 87, 114
Hin1II CATG 5 cut(s) 69, 329, 413, 458, 620
HinfI GANTC 2 cut(s) 569, 626
Hpy166II GTNNAC 1 cut(s) 461
Hpy188I TCNGA 2 cut(s) 157, 523
Hpy188III TCNNGA 4 cut(s) 338, 594, 623, 633
Hpy8I GTNNAC 1 cut(s) 461
Hpy99I CGWCG 1 cut(s) 518
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 465
HpyCH4V TGCA 3 cut(s) 225, 316, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpyF3I CTNAG 1 cut(s) 137
Hsp92II CATG 5 cut(s) 69, 329, 413, 458, 620
Kzo9I GATC 3 cut(s) 445, 518, 538
LmnI GCTCC 2 cut(s) 129, 370
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 325
MaeI CTAG 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 9, 262
MalI GATC 3 cut(s) 447, 520, 540
MboI GATC 3 cut(s) 445, 518, 538
MboII GAAGA 7 cut(s) 44, 47, 487, 536, 578, 590, 621
MflI RGATCY 1 cut(s) 518
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 1 cut(s) 597
MluNI TGGCCA 1 cut(s) 87
MmeI TCCRAC 1 cut(s) 159
Mox20I TGGCCA 1 cut(s) 87
MroXI GAANNNNTTC 1 cut(s) 394
MscI TGGCCA 1 cut(s) 87
MseI TTAA 2 cut(s) 204, 330
MslI CAYNNNNRTG 1 cut(s) 246
Msp20I TGGCCA 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 228
MspR9I CCNGG 2 cut(s) 128, 587
MvaI CCWGG 2 cut(s) 128, 587
MwoI GCNNNNNNNGC 1 cut(s) 225
NcoI CCATGG 1 cut(s) 454
NdeII GATC 3 cut(s) 445, 518, 538
NlaIII CATG 5 cut(s) 69, 329, 413, 458, 620
NmuCI GTSAC 1 cut(s) 262
NspI RCATGY 1 cut(s) 69
PciI ACATGT 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 394
PfeI GAWTC 2 cut(s) 569, 626
PfoI TCCNGGA 1 cut(s) 126
PkrI GCNGC 2 cut(s) 143, 227
PscI ACATGT 1 cut(s) 65
Psp6I CCWGG 2 cut(s) 126, 585
PspEI GGTNACC 1 cut(s) 9
PspFI CCCAGC 1 cut(s) 295
PspGI CCWGG 2 cut(s) 126, 585
PsuI RGATCY 1 cut(s) 518
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 2 cut(s) 204, 330
SatI GCNGC 2 cut(s) 142, 226
Sau3AI GATC 3 cut(s) 445, 518, 538
ScrFI CCNGG 2 cut(s) 128, 587
SetI ASST 5 cut(s) 59, 126, 297, 405, 609
SfaNI GCATC 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 2 cut(s) 116, 440
SmoI CTYRAG 2 cut(s) 116, 440
Sse9I AATT 1 cut(s) 597
SsiI CCGC 3 cut(s) 142, 228, 354
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 2 cut(s) 126, 585
StyI CCWWGG 1 cut(s) 454
TaaI ACNGT 1 cut(s) 465
TasI AATT 1 cut(s) 597
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 2 cut(s) 569, 626
Tru1I TTAA 2 cut(s) 204, 330
Tru9I TTAA 2 cut(s) 204, 330
TscAI CASTG 2 cut(s) 455, 504
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 314
TspGWI ACGGA 1 cut(s) 531
TspRI CASTG 2 cut(s) 455, 504
XceI RCATGY 1 cut(s) 69
XmiI GTMKAC 1 cut(s) 460
XmnI GAANNNNTTC 1 cut(s) 394
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.