Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Reverse (-)

49314190 .. 49314717

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G023500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAGTATGAAATTCAAATCCGTTGATGAAGCAGAGAAACTTTCTTCAAATTACTTGCTTGCTATGGGCTTTGGCTATAGATTGGATAGTTTGGGACTTGGCCCAGGTGATCGCATAACAAGGAGACAATTCTTATGCTTTGAGGCAGGGGTGGTGAGAGCAGAGAAGTGGTTACGGATAAAGGATAGGGTCTGTAGTCCAAAAAGAGTCACTCGAGAAGGTTGCAAGACAAAGTTCCAAGTGAACTATTCCAAAATATTAAGAGTGTATGTCGTAAAAGCATTCATAATAGAGCACACCCACAAACTCAAATCTACAAGGGAGTCCCCATTCCTACGGTCACACCAAGAAGTGAAAGAAGAAGACTTGTACCTTGCCATAGTTATGTGTCGAGTGTCAATTAGGTCATGTTATGCTTATGAATACATAGTAGATCAGGTAGGTAGATATGTAAACGTGGGATTCACAGTGAAAGATCTCTATAACAAGCTGGATGACGAACGGCGAAGCACTAAATTCGATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05160 map03013 map05160

Pfam Domains

Protein Families

PCI

Protein Analysis

175

Amino Acids

20.5

Weight (kDa)

9.49

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	17 - 104	5e-08	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	11, 515
AfaI	GTAC	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	16, 48
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	1 cut(s)	490
AluI	AGCT	1 cut(s)	490
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	118
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	1 cut(s)	100
ApoI	RAATTY	2 cut(s)	11, 515
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	2 cut(s)	119, 166
AvaI	CYCGRG	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	297
BceAI	ACGGC	1 cut(s)	518
BcgI	CGANNNNNNTGC	3 cut(s)	204, 238, 499
BciT130I	CCWGG	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	118
BfmI	CTRYAG	2 cut(s)	76, 193
BglII	AGATCT	1 cut(s)	475
Bme1390I	CCNGG	1 cut(s)	105
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	499
BshFI	GGCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	213
BslFI	GGGAC	2 cut(s)	108, 310
BsmAI	GTCTC	1 cut(s)	118
BsmFI	GGGAC	2 cut(s)	108, 310
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	102
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	109, 433, 475
BspANI	GGCC	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	3 cut(s)	109, 433, 475
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	339, 469
BstC8I	GCNNGC	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	499
BstKTI	GATC	3 cut(s)	112, 436, 478
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	3 cut(s)	109, 433, 475
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstSFI	CTRYAG	2 cut(s)	76, 193
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	499
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	1 cut(s)	408
CviJI	RGCY	4 cut(s)	69, 75, 102, 490
CviKI_1	RGCY	4 cut(s)	69, 75, 102, 490
CviQI	GTAC	1 cut(s)	370
DpnI	GATC	3 cut(s)	111, 435, 477
DpnII	GATC	3 cut(s)	109, 433, 475
Eco88I	CYCGRG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	103
FaeI	CATG	1 cut(s)	411
FaqI	GGGAC	2 cut(s)	108, 310
FatI	CATG	1 cut(s)	407
FokI	GGATG	1 cut(s)	506
HaeIII	GGCC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	411
HinfI	GANTC	3 cut(s)	207, 323, 462
HphI	GGTGA	2 cut(s)	119, 166
Hpy166II	GTNNAC	2 cut(s)	244, 454
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	244, 454
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	2 cut(s)	339, 469
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	1 cut(s)	411
Kzo9I	GATC	3 cut(s)	109, 433, 475
LpnPI	CCDG	5 cut(s)	90, 117, 132, 422, 476
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	3 cut(s)	171, 208, 339
MalI	GATC	3 cut(s)	111, 435, 477
MboI	GATC	3 cut(s)	109, 433, 475
MboII	GAAGA	3 cut(s)	36, 371, 374
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	5 cut(s)	11, 49, 128, 399, 515
MlyI	GAGTC	2 cut(s)	216, 332
MnlI	CCTC	1 cut(s)	136
MseI	TTAA	1 cut(s)	260
MslI	CAYNNNNRTG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	105
NdeII	GATC	3 cut(s)	109, 433, 475
NlaIII	CATG	1 cut(s)	411
NmuCI	GTSAC	2 cut(s)	208, 339
PaeR7I	CTCGAG	1 cut(s)	213
PctI	GAATGC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	462
PleI	GAGTC	2 cut(s)	215, 331
PpsI	GAGTC	2 cut(s)	215, 331
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	475
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	260
Sau3AI	GATC	3 cut(s)	109, 433, 475
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	2 cut(s)	216, 332
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	8 cut(s)	109, 223, 375, 407, 441, 445, 459, 492
SfcI	CTRYAG	2 cut(s)	76, 193
Sfr274I	CTCGAG	1 cut(s)	213
SlaI	CTCGAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	5 cut(s)	11, 49, 128, 399, 515
SspI	AATATT	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	339, 469
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	3 cut(s)	214, 391, 519
TasI	AATT	5 cut(s)	11, 49, 128, 399, 515
TfiI	GAWTC	1 cut(s)	462
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	2 cut(s)	208, 339
Tsp45I	GTSAC	2 cut(s)	208, 339
TspDTI	ATGAA	4 cut(s)	23, 42, 274, 435
TspGWI	ACGGA	2 cut(s)	10, 190
TspRI	CASTG	1 cut(s)	474
XapI	RAATTY	2 cut(s)	11, 515
XhoI	CTCGAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.