Rh2DG282300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001462
Physical Location & Seq
Forward (+)
32251067 .. 32252296
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG282300.1

Sequence Viewer

Length: 876 bp
ATGAACTCTGAGCATCCCAGTTCGAGTGATTGCCAATACACCGAGGTCCAATCTGCTGACCAGGACTCAGCTGAACCACAACAGGAAGAGAGGGTCAGTTATGGGGATGAGAATTTTACTGCCAAAAGCCGTGTTGGGAAAAGTTTTGCAGAATTGACTGCGGAGGATGTAGAAAGAAGAGAATTTGCCACTCTGGATGATGCCGAAAATTGGTATGGAATGTATGCAACTGCACTTGGTTTTATGACAAGATTGCAGAGGGTTACTAGAGGGATTGGAGGCAGGATAACGAGGCGAAGATTGGTTTGTAATAAAGAAGGTAAAAGAGAAGCAAAGTGGCTGCAAAAAGAGGACCGCGTTCGTAATGCTAAGCAAGAGACCCGATGCAACTGCCTAGCAGCATGCTGTATCCATTTCAATAAGAATAGTCAAACATACATTATCACTGAATTCGAAACCGAACACAATCACGATCTTGCCATGCATTCCAATGGTTCGGTTATTAATGCAGACATGGGACACCTCGGTGCAAGGCGCACTTGTTCAGTCAGCACCTCTAGGGCAGATGACTACACGGTGAAAAGCAGTGGGGGATTTGAGTTTGTGGGAGACACTGAGAAGGATCTTTTCAACAAGATAGAGGCAGAGCCAAGGGCCAAATTGTTTAAGCAGGGGGAAGAAACTGCACCAATAGTGGAGGTGAGTGACATTACAATGCCGCCTTGGAGCATTAACCTAGTGGGGTTCGGCGATGAGTATAGATGCGATCACGTTGACATACCACGGGGAGTGACTTATAGCTATGTCTCATTGTCACCACATGTTAAAGCGGTGCCGACACGGCATCAACATTACTTAGGCAGATTGCTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

291

Amino Acids

32.95

Weight (kDa)

5.84

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 71 - 160 5.7e-17 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 832
AccII CGCG 1 cut(s) 357
AciI CCGC 4 cut(s) 161, 355, 719, 830
AclWI GGATC 1 cut(s) 630
AcsI RAATTY 3 cut(s) 112, 182, 449
AfiI CCNNNNNNNGG 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 820
AgsI TTSAA 2 cut(s) 418, 631
AjnI CCWGG 1 cut(s) 60
AleI CACNNNNGTG 1 cut(s) 525
AluBI AGCT 2 cut(s) 71, 801
AluI AGCT 2 cut(s) 71, 801
Alw26I GTCTC 3 cut(s) 371, 603, 811
AlwI GGATC 1 cut(s) 630
AoxI GGCC 1 cut(s) 654
ApeKI GCWGC 2 cut(s) 340, 398
ApoI RAATTY 3 cut(s) 112, 182, 449
AseI ATTAAT 1 cut(s) 504
AspLEI GCGC 1 cut(s) 537
AspS9I GGNCC 3 cut(s) 46, 352, 654
AsuHPI GGTGA 3 cut(s) 589, 712, 807
AsuII TTCGAA 1 cut(s) 453
AvaII GGWCC 2 cut(s) 46, 352
BanI GGYRCC 1 cut(s) 832
BbvI GCAGC 2 cut(s) 327, 410
BceAI ACGGC 2 cut(s) 114, 857
BcgI CGANNNNNNTGC 2 cut(s) 372, 406
BciT130I CCWGG 1 cut(s) 62
BciVI GTATCC 1 cut(s) 419
BcoDI GTCTC 3 cut(s) 371, 603, 811
BfaI CTAG 4 cut(s) 267, 395, 558, 737
BfuI GTATCC 1 cut(s) 419
BglI GCCNNNNNGGC 1 cut(s) 841
BisI GCNGC 3 cut(s) 341, 399, 719
BlpI GCTNAGC 1 cut(s) 369
BlsI GCNGC 3 cut(s) 342, 400, 720
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 2 cut(s) 46, 352
BmgT120I GGNCC 3 cut(s) 46, 352, 654
BmiI GGNNCC 1 cut(s) 834
BmrFI CCNGG 1 cut(s) 62
BmrI ACTGGG 1 cut(s) 12
BmsI GCATC 5 cut(s) 22, 190, 374, 752, 853
BmuI ACTGGG 1 cut(s) 12
Bpu1102I GCTNAGC 1 cut(s) 369
Bpu14I TTCGAA 1 cut(s) 453
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 5 cut(s) 42, 523, 650, 722, 782
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 5 cut(s) 42, 523, 650, 722, 782
BseGI GGATG 4 cut(s) 13, 112, 172, 202
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 2 cut(s) 81, 606
BseNI ACTGG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 327, 410
BsgI GTGCAG 2 cut(s) 216, 669
Bsh1236I CGCG 1 cut(s) 357
BshFI GGCC 1 cut(s) 656
BshNI GGYRCC 1 cut(s) 832
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 3 cut(s) 371, 603, 811
BsmFI GGGAC 1 cut(s) 531
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 1 cut(s) 656
Bso31I GGTCTC 1 cut(s) 371
Bsp119I TTCGAA 1 cut(s) 453
Bsp143I GATC 3 cut(s) 472, 622, 766
Bsp1720I GCTNAGC 1 cut(s) 369
BspACI CCGC 4 cut(s) 161, 355, 719, 830
BspANI GGCC 1 cut(s) 656
BspCNI CTCAG 2 cut(s) 80, 607
BspFNI CGCG 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 834
BspPI GGATC 1 cut(s) 630
BspT104I TTCGAA 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 832
BspTNI GGTCTC 1 cut(s) 371
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 5 cut(s) 42, 523, 650, 722, 782
BssMI GATC 3 cut(s) 472, 622, 766
BssT1I CCWWGG 2 cut(s) 650, 722
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 577
Bst6I CTCTTC 2 cut(s) 81, 172
BstBI TTCGAA 1 cut(s) 453
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 5 cut(s) 9, 67, 369, 615, 856
BstDSI CCRYGG 1 cut(s) 782
BstF5I GGATG 4 cut(s) 13, 112, 172, 202
BstFNI CGCG 1 cut(s) 357
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 3 cut(s) 475, 625, 769
BstMAI GTCTC 3 cut(s) 371, 603, 811
BstMBI GATC 3 cut(s) 472, 622, 766
BstMWI GCNNNNNNNGC 1 cut(s) 841
BstNI CCWGG 1 cut(s) 62
BstNSI RCATGY 2 cut(s) 405, 824
BstSCI CCNGG 1 cut(s) 60
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 2 cut(s) 327, 410
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 1 cut(s) 656
BtgI CCRYGG 1 cut(s) 782
BtgZI GCGATG 1 cut(s) 765
BtsCI GGATG 4 cut(s) 13, 112, 172, 202
BtsI GCAGTG 1 cut(s) 592
BtsIMutI CAGTG 3 cut(s) 444, 592, 612
Cac8I GCNNGC 1 cut(s) 403
CfoI GCGC 1 cut(s) 537
Cfr13I GGNCC 3 cut(s) 46, 352, 654
CviAII CATG 4 cut(s) 402, 481, 514, 821
CviJI RGCY 6 cut(s) 71, 129, 340, 649, 656, 801
CviKI_1 RGCY 6 cut(s) 71, 129, 340, 649, 656, 801
DdeI CTNAG 5 cut(s) 9, 67, 369, 615, 856
DpnI GATC 3 cut(s) 474, 624, 768
DpnII GATC 3 cut(s) 472, 622, 766
Eam1104I CTCTTC 2 cut(s) 81, 172
EarI CTCTTC 2 cut(s) 81, 172
Eco130I CCWWGG 2 cut(s) 650, 722
Eco31I GGTCTC 1 cut(s) 371
Eco47I GGWCC 2 cut(s) 46, 352
EcoRI GAATTC 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 2 cut(s) 650, 722
EcoT22I ATGCAT 1 cut(s) 486
ErhI CCWWGG 2 cut(s) 650, 722
FaeI CATG 4 cut(s) 405, 484, 517, 824
FalI AAGNNNNNCTT 2 cut(s) 523, 555
FaqI GGGAC 1 cut(s) 531
FatI CATG 4 cut(s) 401, 480, 513, 820
Fnu4HI GCNGC 3 cut(s) 341, 399, 719
FokI GGATG 3 cut(s) 119, 179, 209
Fsp4HI GCNGC 3 cut(s) 341, 399, 719
FspBI CTAG 4 cut(s) 267, 395, 558, 737
GlaI GCGC 1 cut(s) 536
GluI GCNGC 3 cut(s) 341, 399, 719
HaeIII GGCC 1 cut(s) 656
HhaI GCGC 1 cut(s) 537
Hin1II CATG 4 cut(s) 405, 484, 517, 824
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HinfI GANTC 1 cut(s) 65
HphI GGTGA 3 cut(s) 589, 712, 807
Hpy166II GTNNAC 1 cut(s) 775
Hpy188I TCNGA 2 cut(s) 10, 875
Hpy188III TCNNGA 2 cut(s) 194, 470
Hpy8I GTNNAC 1 cut(s) 775
HpyAV CCTTC 2 cut(s) 311, 613
HpyCH4III ACNGT 1 cut(s) 577
HpyCH4IV ACGT 1 cut(s) 771
HpyF10VI GCNNNNNNNGC 1 cut(s) 841
HpyF3I CTNAG 5 cut(s) 9, 67, 369, 615, 856
HpySE526I ACGT 1 cut(s) 771
Hsp92II CATG 4 cut(s) 405, 484, 517, 824
HspAI GCGC 1 cut(s) 535
Kzo9I GATC 3 cut(s) 472, 622, 766
LmnI GCTCC 1 cut(s) 726
LpnPI CCDG 8 cut(s) 31, 47, 68, 74, 179, 268, 656, 854
Lsp1109I GCAGC 2 cut(s) 327, 410
LweI GCATC 5 cut(s) 22, 190, 374, 752, 853
MaeI CTAG 4 cut(s) 267, 395, 558, 737
MaeII ACGT 1 cut(s) 771
MaeIII GTNAC 4 cut(s) 262, 704, 790, 813
MalI GATC 3 cut(s) 474, 624, 768
MboI GATC 3 cut(s) 472, 622, 766
MboII GAAGA 4 cut(s) 98, 189, 309, 689
MflI RGATCY 1 cut(s) 622
MluCI AATT 6 cut(s) 112, 152, 182, 208, 449, 659
MlyI GAGTC 1 cut(s) 59
Mph1103I ATGCAT 1 cut(s) 486
MseI TTAA 4 cut(s) 504, 666, 732, 825
MslI CAYNNNNRTG 3 cut(s) 489, 525, 713
MspA1I CMGCKG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 62
Mva1269I GAATGC 1 cut(s) 484
MvaI CCWGG 1 cut(s) 62
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 841
NdeII GATC 3 cut(s) 472, 622, 766
NlaIII CATG 4 cut(s) 405, 484, 517, 824
NlaIV GGNNCC 1 cut(s) 834
NmuCI GTSAC 3 cut(s) 704, 790, 813
NsiI ATGCAT 1 cut(s) 486
NspI RCATGY 2 cut(s) 405, 824
NspV TTCGAA 1 cut(s) 453
OliI CACNNNNGTG 1 cut(s) 525
PaeI GCATGC 1 cut(s) 405
PciI ACATGT 1 cut(s) 820
PctI GAATGC 1 cut(s) 484
PkrI GCNGC 3 cut(s) 342, 400, 720
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PscI ACATGT 1 cut(s) 820
PshBI ATTAAT 1 cut(s) 504
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 834
PspPI GGNCC 3 cut(s) 46, 352, 654
PsuI RGATCY 1 cut(s) 622
PvuII CAGCTG 1 cut(s) 71
RseI CAYNNNNRTG 3 cut(s) 489, 525, 713
SaqAI TTAA 4 cut(s) 504, 666, 732, 825
SatI GCNGC 3 cut(s) 341, 399, 719
Sau3AI GATC 3 cut(s) 472, 622, 766
Sau96I GGNCC 3 cut(s) 46, 352, 654
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 62
SetI ASST 9 cut(s) 48, 73, 322, 525, 557, 702, 738, 774, 803
SfaNI GCATC 5 cut(s) 22, 190, 374, 752, 853
SfuI TTCGAA 1 cut(s) 453
SinI GGWCC 2 cut(s) 46, 352
SmiMI CAYNNNNRTG 3 cut(s) 489, 525, 713
SphI GCATGC 1 cut(s) 405
Sse9I AATT 6 cut(s) 112, 152, 182, 208, 449, 659
SsiI CCGC 4 cut(s) 161, 355, 719, 830
SspMI CTAG 4 cut(s) 267, 395, 558, 737
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 2 cut(s) 650, 722
TaaI ACNGT 1 cut(s) 577
TaiI ACGT 1 cut(s) 774
TaqI TCGA 2 cut(s) 23, 453
TasI AATT 6 cut(s) 112, 152, 182, 208, 449, 659
TauI GCSGC 1 cut(s) 721
Tru1I TTAA 4 cut(s) 504, 666, 732, 825
Tru9I TTAA 4 cut(s) 504, 666, 732, 825
TscAI CASTG 3 cut(s) 451, 592, 619
TseFI GTSAC 3 cut(s) 704, 790, 813
TseI GCWGC 2 cut(s) 340, 398
Tsp45I GTSAC 3 cut(s) 704, 790, 813
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 451, 592, 619
VpaK11BI GGWCC 2 cut(s) 46, 352
VspI ATTAAT 1 cut(s) 504
XapI RAATTY 3 cut(s) 112, 182, 449
XceI RCATGY 2 cut(s) 405, 824
XspI CTAG 4 cut(s) 267, 395, 558, 737
Zsp2I ATGCAT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.