FvH4_4g10571

MULE transposase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001462
Physical Location & Seq
Reverse (-)
14320614 .. 14321240
627 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10571.t1

Sequence Viewer

Length: 627 bp
ATGGATGCTTCTAGGAATGAAGAACAGCCAACCATGGATCCATTGGAGAATGAAGAACAACCTTCTTCGGGTTTTGAAGATGTAAAGGTACACGTCCCAAGACATGGAAGCTTTTCAGTTTCTGATATTGAAGCCATGACATCCAATACAGTTGATGAGGCAGAAAGTTTCTACGCTGCCTATTCTGTGGCAGTTGGGTTTGGTATAAGGAAGAGTGACAAGGGTGAGTCTAATGGTTTGATTCGGAGGAGGGAGTGGGTCTGCAACAAGGAAGGAACCCGAAAAGCAAACAAGTCCTTGGAACAAGGAGAAAGCAGTCGCTATGCTCGGAGAGAGACAAGAACATTGTGTGGAGCTAAACTGAGGATTGGATACAGTGAGGCAACCAAAGTTTATGTGGTGAAGGCATTCATTCCTCAGCATAATCACATGCTGGCAACTAGCAACCAAATCCCCTTCATTCGTACTAATCGACACGTTGGCGAGGAATCTTTGGCTCTAACAAATACGATGACAAGGGTGTCAATTAGACCTTGTCACGCCTATGAGTATATGGTCGAACAGAGCGGGGGATATAGGAGAGTGGGATTTACCGTGAAGGACCTCTACAACAAGATCGACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

209

Amino Acids

23.56

Weight (kDa)

7.74

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 56 - 146 3.2e-17 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 520
AccB7I CCANNNNNTGG 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 567
AciI CCGC 1 cut(s) 567
AclWI GGATC 2 cut(s) 32, 45
AfaI GTAC 2 cut(s) 90, 466
AfiI CCNNNNNNNGG 2 cut(s) 68, 104
AflIII ACRYGT 2 cut(s) 91, 475
AgsI TTSAA 2 cut(s) 77, 131
AjiI CACGTC 1 cut(s) 94
AluBI AGCT 2 cut(s) 111, 356
AluI AGCT 2 cut(s) 111, 356
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 2 cut(s) 32, 45
AlwNI CAGNNNCTG 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 176
Asp700I GAANNNNTTC 2 cut(s) 112, 407
AspS9I GGNCC 1 cut(s) 601
AsuHPI GGTGA 2 cut(s) 236, 412
AvaII GGWCC 1 cut(s) 601
BamHI GGATCC 1 cut(s) 37
BarI GAAGNNNNNNTAC 2 cut(s) 590, 622
BbvCI CCTCAGC 1 cut(s) 417
BbvI GCAGC 1 cut(s) 163
BciVI GTATCC 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 2 cut(s) 12, 441
BfuI GTATCC 1 cut(s) 365
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 601
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 601
BmiI GGNNCC 2 cut(s) 39, 277
Bpu10I CCTNAGC 1 cut(s) 417
BsaJI CCNNGG 2 cut(s) 33, 297
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 104
Bse1I ACTGG 1 cut(s) 622
BseDI CCNNGG 2 cut(s) 33, 297
BseGI GGATG 2 cut(s) 10, 140
BseLI CCNNNNNNNGG 2 cut(s) 68, 104
BseMII CTCAG 2 cut(s) 353, 431
BseNI ACTGG 1 cut(s) 622
BseRI GAGGAG 1 cut(s) 262
BseXI GCAGC 1 cut(s) 163
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 68, 104
BsmAI GTCTC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 407
Bsp143I GATC 2 cut(s) 37, 615
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 1 cut(s) 567
BspCNI CTCAG 2 cut(s) 354, 430
BspLI GGNNCC 2 cut(s) 39, 277
BspPI GGATC 2 cut(s) 32, 45
BsrBI CCGCTC 1 cut(s) 567
BsrI ACTGG 1 cut(s) 622
BssECI CCNNGG 2 cut(s) 33, 297
BssMI GATC 2 cut(s) 37, 615
BssT1I CCWWGG 2 cut(s) 33, 297
Bst4CI ACNGT 3 cut(s) 151, 377, 595
Bst6I CTCTTC 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 2 cut(s) 362, 417
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 10, 140
BstKTI GATC 2 cut(s) 40, 618
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 2 cut(s) 37, 615
BstNSI RCATGY 1 cut(s) 433
BstV1I GCAGC 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuI GTATCC 1 cut(s) 365
BtgI CCRYGG 1 cut(s) 33
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 2 cut(s) 10, 140
BtsIMutI CAGTG 1 cut(s) 382
Cac8I GCNNGC 1 cut(s) 435
CaiI CAGNNNCTG 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 601
Csp6I GTAC 2 cut(s) 89, 465
CviAII CATG 4 cut(s) 34, 104, 136, 430
CviJI RGCY 5 cut(s) 28, 111, 134, 356, 497
CviKI_1 RGCY 5 cut(s) 28, 111, 134, 356, 497
CviQI GTAC 2 cut(s) 89, 465
DdeI CTNAG 2 cut(s) 362, 417
DpnI GATC 2 cut(s) 39, 617
DpnII GATC 2 cut(s) 37, 615
DrdI GACNNNNNNGTC 1 cut(s) 520
DseDI GACNNNNNNGTC 1 cut(s) 520
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco130I CCWWGG 2 cut(s) 33, 297
Eco47I GGWCC 1 cut(s) 601
EcoO109I RGGNCCY 1 cut(s) 601
EcoT14I CCWWGG 2 cut(s) 33, 297
ErhI CCWWGG 2 cut(s) 33, 297
FaeI CATG 4 cut(s) 37, 107, 139, 433
FaqI GGGAC 1 cut(s) 80
FatI CATG 4 cut(s) 33, 103, 135, 429
FauI CCCGC 1 cut(s) 560
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 2 cut(s) 17, 127
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 2 cut(s) 12, 441
GluI GCNGC 1 cut(s) 177
Hin1II CATG 4 cut(s) 37, 107, 139, 433
HindIII AAGCTT 1 cut(s) 109
HinfI GANTC 3 cut(s) 227, 241, 488
HphI GGTGA 2 cut(s) 236, 412
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 3 cut(s) 124, 246, 330
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 5 cut(s) 72, 266, 397, 466, 592
HpyCH4III ACNGT 3 cut(s) 151, 377, 595
HpyCH4IV ACGT 2 cut(s) 93, 477
HpyCH4V TGCA 1 cut(s) 264
HpyF3I CTNAG 2 cut(s) 362, 417
HpySE526I ACGT 2 cut(s) 93, 477
Hsp92II CATG 4 cut(s) 37, 107, 139, 433
Kzo9I GATC 2 cut(s) 37, 615
LmnI GCTCC 1 cut(s) 353
LpnPI CCDG 1 cut(s) 419
Lsp1109I GCAGC 1 cut(s) 163
MaeI CTAG 2 cut(s) 12, 441
MaeII ACGT 2 cut(s) 93, 477
MaeIII GTNAC 2 cut(s) 215, 536
MalI GATC 2 cut(s) 39, 617
MbiI CCGCTC 1 cut(s) 567
MboI GATC 2 cut(s) 37, 615
MboII GAAGA 5 cut(s) 32, 57, 65, 89, 223
MflI RGATCY 1 cut(s) 37
MluCI AATT 1 cut(s) 525
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 8 cut(s) 151, 240, 243, 357, 373, 426, 478, 614
MroXI GAANNNNTTC 2 cut(s) 112, 407
MslI CAYNNNNRTG 1 cut(s) 543
Mva1269I GAATGC 1 cut(s) 407
NcoI CCATGG 1 cut(s) 33
NdeII GATC 2 cut(s) 37, 615
NlaIII CATG 4 cut(s) 37, 107, 139, 433
NlaIV GGNNCC 2 cut(s) 39, 277
NmuCI GTSAC 2 cut(s) 215, 536
NspI RCATGY 1 cut(s) 433
PcsI WCGNNNNNNNCGW 1 cut(s) 469
PctI GAATGC 1 cut(s) 407
PdmI GAANNNNTTC 2 cut(s) 112, 407
PfeI GAWTC 2 cut(s) 241, 488
PflFI GACNNNGTC 1 cut(s) 534
PflMI CCANNNNNTGG 1 cut(s) 104
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 601
Psp5II RGGWCCY 1 cut(s) 601
PspN4I GGNNCC 2 cut(s) 39, 277
PspPI GGNCC 1 cut(s) 601
PspPPI RGGWCCY 1 cut(s) 601
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 37
PsyI GACNNNGTC 1 cut(s) 534
RsaI GTAC 2 cut(s) 90, 466
RsaNI GTAC 2 cut(s) 89, 465
RseI CAYNNNNRTG 1 cut(s) 543
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 37, 615
Sau96I GGNCC 1 cut(s) 601
SchI GAGTC 1 cut(s) 236
SetI ASST 8 cut(s) 64, 90, 96, 113, 358, 480, 535, 606
SinI GGWCC 1 cut(s) 601
SmiMI CAYNNNNRTG 1 cut(s) 543
Sse9I AATT 1 cut(s) 525
SsiI CCGC 1 cut(s) 567
SspMI CTAG 2 cut(s) 12, 441
StyI CCWWGG 2 cut(s) 33, 297
TaaI ACNGT 3 cut(s) 151, 377, 595
TaiI ACGT 2 cut(s) 96, 480
TaqI TCGA 3 cut(s) 472, 558, 618
TasI AATT 1 cut(s) 525
TfiI GAWTC 2 cut(s) 241, 488
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 2 cut(s) 215, 536
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 2 cut(s) 215, 536
TspDTI ATGAA 4 cut(s) 33, 66, 400, 448
TspRI CASTG 1 cut(s) 382
Tth111I GACNNNGTC 1 cut(s) 534
Van91I CCANNNNNTGG 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 601
XceI RCATGY 1 cut(s) 433
XcmI CCANNNNNNNNNTGG 2 cut(s) 40, 394
XmnI GAANNNNTTC 2 cut(s) 112, 407
XspI CTAG 2 cut(s) 12, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.