Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Reverse (-)

3925917 .. 3926660

Gene Structure 744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03536.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGATGCGTCTGAGACTGAAAAACAGCCGAATAAGGGTGTAGAGGATGTGGCAGTAGATGTTCTCGGATTTGGATGCCTGATGATCGCCGATGTGCGAGCTTTGACCTTCGAAACAGTAGATGAGGCAGAGAGATTCTACTGTGCATATTCAGCAGCAGTTGGATTTGGATGTAGGAAGGATGACAAGGGAGAGGCTAACGGTTTGATTCGGTGGAGGCAGTGGGTCTGCTGCAAGGAAGGGACTCGAGGTAAAAAGTACTTGGAAGCAGATGGTTTGAGTCGTACTCCTCGGAAACAGACTAGGGTGAATTTCCAAGCTATATTTCAGATCAATTACAATGATGGGAGTAGAGTTTATATGGTGAAGATATTCGTTCCAGAGCATAATCATGAACTAGCTACTGGGAACCAGATTGCATTCGTTCGTTCTCATCGTCATGTCAGCGACGCAGCTTTGGCTCTGACAAACACAATGACAAGGGTTTCAATCAGACCATGTCACACGTATGAGTATATGGTGGAGCAGGCTGGGGGATATTCGGTAGTGGGATTCACTATGAAGGACCTCTACAACAAGCTTGACCAACAACGACGGACCTCCCCATTTGAGAGTGATTCCGAAGGAGAGCTTTCCTACATGAGCACTGGCAGCAAAAGACCCACACTTCATATGCAGATTCACTACAGATTTGGAAGACAGGTTAGTGGACATTTTTTGGGGAGATGGGCATTCATTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

248

Amino Acids

28.13

Weight (kDa)

8.42

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	45 - 134	1.3e-14	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	310
AfaI	GTAC	2 cut(s)	260, 286
AfiI	CCNNNNNNNGG	1 cut(s)	35
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	1 cut(s)	489
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AluBI	AGCT	6 cut(s)	101, 320, 401, 455, 580, 631
AluI	AGCT	6 cut(s)	101, 320, 401, 455, 580, 631
Alw21I	GWGCWC	1 cut(s)	647
Alw26I	GTCTC	1 cut(s)	8
Ama87I	CYCGRG	1 cut(s)	246
ApeKI	GCWGC	4 cut(s)	155, 231, 452, 651
ApoI	RAATTY	1 cut(s)	310
Asp700I	GAANNNNTTC	1 cut(s)	371
AspS9I	GGNCC	2 cut(s)	565, 597
AsuHPI	GGTGA	2 cut(s)	319, 376
AsuII	TTCGAA	1 cut(s)	111
AvaI	CYCGRG	1 cut(s)	246
AvaII	GGWCC	2 cut(s)	565, 597
BarI	GAAGNNNNNNTAC	2 cut(s)	554, 586
BbsI	GAAGAC	1 cut(s)	703
Bbv12I	GWGCWC	1 cut(s)	647
BbvI	GCAGC	4 cut(s)	167, 218, 464, 663
BccI	CCATC	3 cut(s)	266, 338, 720
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	2 cut(s)	303, 398
BfmI	CTRYAG	1 cut(s)	685
BisI	GCNGC	4 cut(s)	156, 232, 453, 652
BlsI	GCNGC	4 cut(s)	157, 233, 454, 653
BmcAI	AGTACT	1 cut(s)	260
Bme18I	GGWCC	2 cut(s)	565, 597
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	2 cut(s)	565, 597
BmiI	GGNNCC	1 cut(s)	410
BmrI	ACTGGG	1 cut(s)	414
BmsI	GCATC	1 cut(s)	65
BmuI	ACTGGG	1 cut(s)	414
BpiI	GAAGAC	1 cut(s)	703
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
Bpu14I	TTCGAA	1 cut(s)	111
BsaAI	YACGTR	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	409, 652
BseDI	CCNNGG	1 cut(s)	290
BseGI	GGATG	5 cut(s)	10, 52, 80, 176, 187
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseNI	ACTGG	2 cut(s)	409, 652
BseRI	GAGGAG	1 cut(s)	279
BseXI	GCAGC	4 cut(s)	167, 218, 464, 663
BseYI	CCCAGC	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	647
BsiHKCI	CYCGRG	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	256
BsmI	GAATGC	2 cut(s)	419, 731
BsoBI	CYCGRG	1 cut(s)	246
Bsp119I	TTCGAA	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	647
Bsp143I	GATC	2 cut(s)	84, 330
BspCNI	CTCAG	1 cut(s)	4
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	410
BspT104I	TTCGAA	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	409, 652
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	2 cut(s)	84, 330
Bst4CI	ACNGT	3 cut(s)	118, 143, 203
BstBAI	YACGTR	1 cut(s)	507
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	2 cut(s)	99, 528
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	5 cut(s)	10, 52, 80, 176, 187
BstKTI	GATC	2 cut(s)	87, 333
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	2 cut(s)	84, 330
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 458, 651
BstSFI	CTRYAG	1 cut(s)	685
BstV1I	GCAGC	4 cut(s)	167, 218, 464, 663
BstV2I	GAAGAC	1 cut(s)	703
BtsCI	GGATG	5 cut(s)	10, 52, 80, 176, 187
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	2 cut(s)	227, 645
Cac8I	GCNNGC	2 cut(s)	99, 528
CciI	TCATGA	1 cut(s)	391
Cfr13I	GGNCC	2 cut(s)	565, 597
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	2 cut(s)	259, 285
CviAII	CATG	4 cut(s)	392, 440, 498, 640
CviQI	GTAC	2 cut(s)	259, 285
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	2 cut(s)	86, 332
DpnII	GATC	2 cut(s)	84, 330
Eco47I	GGWCC	2 cut(s)	565, 597
Eco88I	CYCGRG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	565
FaeI	CATG	4 cut(s)	395, 443, 501, 643
FalI	AAGNNNNNCTT	2 cut(s)	615, 647
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	4 cut(s)	391, 439, 497, 639
FauNDI	CATATG	1 cut(s)	672
Fnu4HI	GCNGC	4 cut(s)	156, 232, 453, 652
FokI	GGATG	5 cut(s)	17, 59, 87, 183, 194
Fsp4HI	GCNGC	4 cut(s)	156, 232, 453, 652
FspBI	CTAG	2 cut(s)	303, 398
GluI	GCNGC	4 cut(s)	156, 232, 453, 652
GsaI	CCCAGC	1 cut(s)	534
HgaI	GACGC	1 cut(s)	458
Hin1II	CATG	4 cut(s)	395, 443, 501, 643
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	7 cut(s)	135, 208, 244, 280, 552, 617, 679
HphI	GGTGA	2 cut(s)	319, 376
Hpy166II	GTNNAC	1 cut(s)	710
Hpy188I	TCNGA	7 cut(s)	13, 68, 294, 330, 465, 494, 622
Hpy188III	TCNNGA	2 cut(s)	380, 392
Hpy8I	GTNNAC	1 cut(s)	710
Hpy99I	CGWCG	2 cut(s)	452, 597
HpyAV	CCTTC	5 cut(s)	118, 172, 233, 556, 617
HpyCH4III	ACNGT	3 cut(s)	118, 143, 203
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	4 cut(s)	146, 234, 419, 676
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 458, 651
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	506
Hsp92II	CATG	4 cut(s)	395, 443, 501, 643
Kzo9I	GATC	2 cut(s)	84, 330
LmnI	GCTCC	1 cut(s)	523
LpnPI	CCDG	8 cut(s)	92, 390, 393, 425, 512, 516, 633, 686
Lsp1109I	GCAGC	4 cut(s)	167, 218, 464, 663
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	2 cut(s)	303, 398
MaeII	ACGT	1 cut(s)	506
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	2 cut(s)	86, 332
MboI	GATC	2 cut(s)	84, 330
MboII	GAAGA	2 cut(s)	379, 708
MhlI	GDGCHC	1 cut(s)	647
MluCI	AATT	2 cut(s)	310, 334
MlyI	GAGTC	2 cut(s)	238, 289
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	8 cut(s)	37, 118, 187, 210, 242, 300, 578, 610
MroXI	GAANNNNTTC	1 cut(s)	371
MslI	CAYNNNNRTG	3 cut(s)	390, 438, 507
Mva1269I	GAATGC	2 cut(s)	419, 731
MwoI	GCNNNNNNNGC	3 cut(s)	152, 458, 651
NdeI	CATATG	1 cut(s)	672
NdeII	GATC	2 cut(s)	84, 330
NlaIII	CATG	4 cut(s)	395, 443, 501, 643
NlaIV	GGNNCC	1 cut(s)	410
NmuCI	GTSAC	1 cut(s)	500
NspV	TTCGAA	1 cut(s)	111
PaeR7I	CTCGAG	1 cut(s)	246
PagI	TCATGA	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	1 cut(s)	433
PctI	GAATGC	2 cut(s)	419, 731
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	5 cut(s)	135, 208, 552, 617, 679
PflFI	GACNNNGTC	1 cut(s)	498
PkrI	GCNGC	4 cut(s)	157, 233, 454, 653
PleI	GAGTC	2 cut(s)	238, 288
PpsI	GAGTC	2 cut(s)	238, 288
Ppu21I	YACGTR	1 cut(s)	507
PpuMI	RGGWCCY	1 cut(s)	565
Psp5II	RGGWCCY	1 cut(s)	565
PspFI	CCCAGC	1 cut(s)	530
PspN4I	GGNNCC	1 cut(s)	410
PspPI	GGNCC	2 cut(s)	565, 597
PspPPI	RGGWCCY	1 cut(s)	565
PspXI	VCTCGAGB	1 cut(s)	246
PsyI	GACNNNGTC	1 cut(s)	498
RsaI	GTAC	2 cut(s)	260, 286
RsaNI	GTAC	2 cut(s)	259, 285
RseI	CAYNNNNRTG	3 cut(s)	390, 438, 507
SatI	GCNGC	4 cut(s)	156, 232, 453, 652
Sau3AI	GATC	2 cut(s)	84, 330
Sau96I	GGNCC	2 cut(s)	565, 597
ScaI	AGTACT	1 cut(s)	260
SchI	GAGTC	2 cut(s)	238, 289
SduI	GDGCHC	1 cut(s)	647
SfaNI	GCATC	1 cut(s)	65
SfcI	CTRYAG	1 cut(s)	685
Sfr274I	CTCGAG	1 cut(s)	246
SfuI	TTCGAA	1 cut(s)	111
SinI	GGWCC	2 cut(s)	565, 597
SlaI	CTCGAG	1 cut(s)	246
SmiMI	CAYNNNNRTG	3 cut(s)	390, 438, 507
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	2 cut(s)	310, 334
SspMI	CTAG	2 cut(s)	303, 398
TaaI	ACNGT	3 cut(s)	118, 143, 203
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	2 cut(s)	111, 247
TasI	AATT	2 cut(s)	310, 334
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	5 cut(s)	135, 208, 552, 617, 679
TscAI	CASTG	2 cut(s)	227, 652
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	4 cut(s)	155, 231, 452, 651
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	4 cut(s)	408, 575, 659, 724
TspGWI	ACGGA	1 cut(s)	610
TspRI	CASTG	2 cut(s)	227, 652
Tth111I	GACNNNGTC	1 cut(s)	498
VpaK11BI	GGWCC	2 cut(s)	565, 597
XapI	RAATTY	1 cut(s)	310
XhoI	CTCGAG	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	2 cut(s)	303, 398
ZrmI	AGTACT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.