RchiOBHm_Chr2g0118731

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001462
Physical Location & Seq
Forward (+)
30907919 .. 30913998
6080 bp
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UTR
Exon/CDS
Intron
PRQ49148

Sequence Viewer

Length: 462 bp
ATGGGGAAAAGCCGTGTTGGGAAAAGTTTTGCAGAATTGACTGCGGATGATGTAGAAGGAAGAGAATTCACCACTCTGGATGATGCCGAAAATTGGTATAGAATGTATGCAACTGCACTTGGTTTTATTGCAAGATTGCAGAGGGTTACTAGAGGGATTGGAGGCAGGATAACGAGGCGAAGATTGGTTTGTAATAAAGAAGGTAAAAGAGAAGCAAAGTGGCTGCAAAAAGAGGACCGTGTTCGTAATGCTAAGCAAGAGACCCGATGCAACTGCCTAGCAGCATGCTGTATCCATTTCAATAAGAATAGTCAAACATACATTATCACTGAATTCAAAACCGAACACAATCACGATCTTGCCATGCATTCCAATGGTTCGGTTACTAATGCAGACATGGACACTTCGGTGCAAGGCACACTTGTTCAGTCAGCACCTCTAGGGCAGATGACTACATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

153

Amino Acids

17.38

Weight (kDa)

9.08

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 32 - 121 3.7e-17 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 44
AcsI RAATTY 2 cut(s) 65, 332
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 2 cut(s) 301, 337
AleI CACNNNNGTG 1 cut(s) 407
Alw26I GTCTC 1 cut(s) 254
ApeKI GCWGC 2 cut(s) 223, 281
ApoI RAATTY 2 cut(s) 65, 332
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 1 cut(s) 235
BbvI GCAGC 2 cut(s) 210, 293
BcgI CGANNNNNNTGC 2 cut(s) 255, 289
BciVI GTATCC 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 3 cut(s) 150, 278, 440
BfuI GTATCC 1 cut(s) 302
BisI GCNGC 2 cut(s) 224, 282
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 2 cut(s) 225, 283
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmsI GCATC 2 cut(s) 73, 257
Bpu1102I GCTNAGC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 93
BseGI GGATG 2 cut(s) 52, 85
BseLI CCNNNNNNNGG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 210, 293
BsgI GTGCAG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 367
Bso31I GGTCTC 1 cut(s) 254
Bsp143I GATC 1 cut(s) 355
Bsp1720I GCTNAGC 1 cut(s) 252
BspACI CCGC 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 254
BssMI GATC 1 cut(s) 355
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 52, 85
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 1 cut(s) 355
BstNSI RCATGY 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 210, 293
BsuI GTATCC 1 cut(s) 302
BtsCI GGATG 2 cut(s) 52, 85
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 235
CviAII CATG 4 cut(s) 285, 364, 397, 456
CviJI RGCY 2 cut(s) 12, 223
CviKI_1 RGCY 2 cut(s) 12, 223
DdeI CTNAG 1 cut(s) 252
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco31I GGTCTC 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 235
EcoRI GAATTC 2 cut(s) 65, 332
EcoT22I ATGCAT 1 cut(s) 369
FaeI CATG 4 cut(s) 288, 367, 400, 459
FaiI YATR 7 cut(s) 99, 108, 286, 319, 365, 398, 457
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FatI CATG 4 cut(s) 284, 363, 396, 455
Fnu4HI GCNGC 2 cut(s) 224, 282
FokI GGATG 2 cut(s) 59, 92
Fsp4HI GCNGC 2 cut(s) 224, 282
FspBI CTAG 3 cut(s) 150, 278, 440
GluI GCNGC 2 cut(s) 224, 282
Hin1II CATG 4 cut(s) 288, 367, 400, 459
HphI GGTGA 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 77, 353
HpyAV CCTTC 2 cut(s) 50, 194
HpyCH4III ACNGT 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 4 cut(s) 288, 367, 400, 459
Kzo9I GATC 1 cut(s) 355
LpnPI CCDG 2 cut(s) 62, 151
Lsp1109I GCAGC 2 cut(s) 210, 293
LweI GCATC 2 cut(s) 73, 257
MaeI CTAG 3 cut(s) 150, 278, 440
MaeIII GTNAC 2 cut(s) 145, 382
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 2 cut(s) 72, 192
MluCI AATT 4 cut(s) 35, 65, 91, 332
MnlI CCTC 6 cut(s) 135, 146, 155, 168, 226, 447
Mph1103I ATGCAT 1 cut(s) 369
MslI CAYNNNNRTG 2 cut(s) 372, 407
Mva1269I GAATGC 1 cut(s) 367
NdeII GATC 1 cut(s) 355
NlaIII CATG 4 cut(s) 288, 367, 400, 459
NsiI ATGCAT 1 cut(s) 369
NspI RCATGY 1 cut(s) 288
OliI CACNNNNGTG 1 cut(s) 407
PaeI GCATGC 1 cut(s) 288
PctI GAATGC 1 cut(s) 367
PkrI GCNGC 2 cut(s) 225, 283
PspPI GGNCC 1 cut(s) 235
RseI CAYNNNNRTG 2 cut(s) 372, 407
SatI GCNGC 2 cut(s) 224, 282
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 1 cut(s) 235
SetI ASST 2 cut(s) 205, 439
SfaNI GCATC 2 cut(s) 73, 257
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 2 cut(s) 372, 407
SphI GCATGC 1 cut(s) 288
Sse9I AATT 4 cut(s) 35, 65, 91, 332
SsiI CCGC 1 cut(s) 44
SspMI CTAG 3 cut(s) 150, 278, 440
TaaI ACNGT 1 cut(s) 239
TasI AATT 4 cut(s) 35, 65, 91, 332
TscAI CASTG 1 cut(s) 334
TseI GCWGC 2 cut(s) 223, 281
TspRI CASTG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 235
XapI RAATTY 2 cut(s) 65, 332
XceI RCATGY 1 cut(s) 288
XspI CTAG 3 cut(s) 150, 278, 440
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.