Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002831.1

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Forward (+)

33616 .. 36778

Gene Structure 3163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002831.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

atggggaaaagccgtgttgggaaaagttttgcagaattgactgcggatgatgtagaaggaagagaattcaccactctggatgatgccgaaaattggtatagaatgtatgcaactgcacttggttttattgcaagattgcagagggttactagagggattggaggcaggataacgaggcgaagattggtttgtaataaagaaggtaaaagagaagcaaagtggctgcaaaaagaggaccgtgttcataatgctaagcaagagacccgatgcaactgcctagcagcatgcttcagcacctctagggcagatgactacatggtgaaaagcaatgggcggtttgagtttgtgggagacactgagaaggatattttcaacaagatagaggcagagccaagggccaaattgtttaatcagggggaagaaactgcaccagtagtggaggtgagtgacattacattaacctactatgtatcattgtcaccacatgttaaagcggttagtgccgacacagcgtcaacattacttcagcagattgctggtctgacatcaatagcaacagagcagtcgctaaaggcgcgtgacgagattttgcgcctgaagagggacagtgtgagggttccatctcaaacaggagatgaaaatacgagctggcactcaagacaaaaggaagctgaagctgcggtgctgaagagggaattagctgagtgtcagcgagagttggaattggtgaagtcggcagataaatataggtacagaaccatcgaagaggttggcgggaattctaaaaagcagattacagaggataactacaataggggtcaatctccagagggtggtgctgatattcaacttttatgctcactgggtgggtgtagcagagatgtcaaggcattcaaagtgcatgaagataaccaaggttcgaaccttgttgcaatcaaattggttttttgcttggaatttcagttggacttgacgttgcaatatccaaaatacataatatccaaatttaaaaactcatcaagaacgaagctacaattcaaattcaaatacaaagtgtccaaatttaaatacgaagtccacattcaaattatacaaatactcataaaacttctcgaagtgtacccatttgtccgactgcatctggacctcggagctgttggtgcaactggagctgctgggtctggttcaactggagctgtcaactggagctgtcgacgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

406

Amino Acids

45.78

Weight (kDa)

9.09

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	833
AccI	GTMKAC	1 cut(s)	1213
AccII	CGCG	1 cut(s)	577
AciI	CCGC	5 cut(s)	44, 334, 494, 680, 774
AcsI	RAATTY	6 cut(s)	65, 778, 956, 1004, 1040, 1061
AcuI	CTGAAG	5 cut(s)	274, 509, 617, 693, 707
AdeI	CACNNNGTG	1 cut(s)	866
AfaI	GTAC	2 cut(s)	752, 1121
AfiI	CCNNNNNNNGG	3 cut(s)	93, 601, 833
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	7 cut(s)	373, 848, 895, 1039, 1045, 1085, 1188
AhdI	GACNNNNNGTC	1 cut(s)	511
AluBI	AGCT	9 cut(s)	648, 671, 677, 701, 1030, 1154, 1172, 1196, 1209
AluI	AGCT	9 cut(s)	648, 671, 677, 701, 1030, 1154, 1172, 1196, 1209
Alw26I	GTCTC	2 cut(s)	254, 345
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	4 cut(s)	223, 281, 677, 1172
ApoI	RAATTY	6 cut(s)	65, 778, 956, 1004, 1040, 1061
AspLEI	GCGC	2 cut(s)	577, 594
AspS9I	GGNCC	3 cut(s)	235, 396, 1144
AsuHPI	GGTGA	5 cut(s)	61, 331, 454, 471, 739
AsuII	TTCGAA	1 cut(s)	920
AvaII	GGWCC	2 cut(s)	235, 1144
BbvI	GCAGC	4 cut(s)	210, 293, 664, 1159
BccI	CCATC	2 cut(s)	628, 767
BcgI	CGANNNNNNTGC	2 cut(s)	255, 289
BcoDI	GTCTC	2 cut(s)	254, 345
BfaI	CTAG	3 cut(s)	150, 278, 300
BisI	GCNGC	4 cut(s)	224, 282, 678, 1173
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	4 cut(s)	225, 283, 679, 1174
Bme18I	GGWCC	2 cut(s)	235, 1144
BmeRI	GACNNNNNGTC	1 cut(s)	511
BmgT120I	GGNCC	3 cut(s)	235, 396, 1144
BmiI	GGNNCC	1 cut(s)	618
BmrI	ACTGGG	1 cut(s)	872
BmsI	GCATC	3 cut(s)	73, 257, 1147
BmuI	ACTGGG	1 cut(s)	872
BpmI	CTGGAG	3 cut(s)	810, 1188, 1212
Bpu1102I	GCTNAGC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	920
BpuEI	CTTGAG	1 cut(s)	640
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	3 cut(s)	392, 913, 1147
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 601, 833
Bse1I	ACTGG	5 cut(s)	431, 867, 1171, 1195, 1208
Bse3DI	GCAATG	1 cut(s)	334
BseDI	CCNNGG	3 cut(s)	392, 913, 1147
BseGI	GGATG	2 cut(s)	52, 85
BseLI	CCNNNNNNNGG	3 cut(s)	93, 601, 833
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	348, 693
BseNI	ACTGG	5 cut(s)	431, 867, 1171, 1195, 1208
BseXI	GCAGC	4 cut(s)	210, 293, 664, 1159
BseYI	CCCAGC	1 cut(s)	1175
BsgI	GTGCAG	2 cut(s)	99, 411
Bsh1236I	CGCG	1 cut(s)	577
BshFI	GGCC	1 cut(s)	398
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	3 cut(s)	93, 601, 833
BsmAI	GTCTC	2 cut(s)	254, 345
BsmFI	GGGAC	1 cut(s)	617
BsmI	GAATGC	1 cut(s)	890
BsnI	GGCC	1 cut(s)	398
Bso31I	GGTCTC	1 cut(s)	254
Bsp119I	TTCGAA	1 cut(s)	920
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	5 cut(s)	44, 334, 494, 680, 774
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	2 cut(s)	349, 694
BspFNI	CGCG	1 cut(s)	577
BspLI	GGNNCC	1 cut(s)	618
BspT104I	TTCGAA	1 cut(s)	920
BspTNI	GGTCTC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	334
BsrI	ACTGG	5 cut(s)	431, 867, 1171, 1195, 1208
BssECI	CCNNGG	3 cut(s)	392, 913, 1147
BssT1I	CCWWGG	2 cut(s)	392, 913
Bst4CI	ACNGT	2 cut(s)	239, 608
Bst6I	CTCTTC	4 cut(s)	55, 593, 683, 759
BstBI	TTCGAA	1 cut(s)	920
BstC8I	GCNNGC	2 cut(s)	286, 650
BstDEI	CTNAG	3 cut(s)	252, 357, 702
BstF5I	GGATG	2 cut(s)	52, 85
BstFNI	CGCG	1 cut(s)	577
BstHHI	GCGC	2 cut(s)	577, 594
BstMAI	GTCTC	2 cut(s)	254, 345
BstMWI	GCNNNNNNNGC	6 cut(s)	500, 509, 574, 677, 1160, 1169
BstNSI	RCATGY	2 cut(s)	288, 488
BstUI	CGCG	1 cut(s)	577
BstV1I	GCAGC	4 cut(s)	210, 293, 664, 1159
BsuRI	GGCC	1 cut(s)	398
BtsCI	GGATG	2 cut(s)	52, 85
BtsIMutI	CAGTG	3 cut(s)	354, 613, 860
Cac8I	GCNNGC	2 cut(s)	286, 650
CfoI	GCGC	2 cut(s)	577, 594
Cfr13I	GGNCC	3 cut(s)	235, 396, 1144
CseI	GACGC	1 cut(s)	501
Csp6I	GTAC	2 cut(s)	751, 1120
CviAII	CATG	4 cut(s)	285, 316, 485, 902
CviQI	GTAC	2 cut(s)	751, 1120
DdeI	CTNAG	3 cut(s)	252, 357, 702
DraI	TTTAAA	2 cut(s)	1009, 1066
DraIII	CACNNNGTG	1 cut(s)	866
DriI	GACNNNNNGTC	1 cut(s)	511
Eam1104I	CTCTTC	4 cut(s)	55, 593, 683, 759
Eam1105I	GACNNNNNGTC	1 cut(s)	511
EarI	CTCTTC	4 cut(s)	55, 593, 683, 759
Eco130I	CCWWGG	2 cut(s)	392, 913
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	2 cut(s)	235, 1144
Eco57I	CTGAAG	5 cut(s)	274, 509, 617, 693, 707
EcoRI	GAATTC	2 cut(s)	65, 778
EcoT14I	CCWWGG	2 cut(s)	392, 913
ErhI	CCWWGG	2 cut(s)	392, 913
FaeI	CATG	4 cut(s)	288, 319, 488, 905
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	4 cut(s)	284, 315, 484, 901
FauI	CCCGC	1 cut(s)	767
FblI	GTMKAC	1 cut(s)	1213
Fnu4HI	GCNGC	4 cut(s)	224, 282, 678, 1173
FokI	GGATG	2 cut(s)	59, 92
Fsp4HI	GCNGC	4 cut(s)	224, 282, 678, 1173
FspBI	CTAG	3 cut(s)	150, 278, 300
GlaI	GCGC	2 cut(s)	576, 593
GluI	GCNGC	4 cut(s)	224, 282, 678, 1173
GsaI	CCCAGC	1 cut(s)	1179
GsuI	CTGGAG	3 cut(s)	810, 1188, 1212
HaeIII	GGCC	1 cut(s)	398
HgaI	GACGC	1 cut(s)	501
HhaI	GCGC	2 cut(s)	577, 594
Hin1II	CATG	4 cut(s)	288, 319, 488, 905
Hin6I	GCGC	2 cut(s)	575, 592
HinP1I	GCGC	2 cut(s)	575, 592
HincII	GTYRAC	3 cut(s)	516, 1201, 1214
HindII	GTYRAC	3 cut(s)	516, 1201, 1214
HphI	GGTGA	5 cut(s)	61, 331, 454, 471, 739
Hpy166II	GTNNAC	5 cut(s)	516, 1078, 1120, 1201, 1214
Hpy188I	TCNGA	3 cut(s)	543, 1133, 1151
Hpy188III	TCNNGA	6 cut(s)	77, 657, 827, 1020, 1112, 1142
Hpy8I	GTNNAC	5 cut(s)	516, 1078, 1120, 1201, 1214
Hpy99I	CGWCG	1 cut(s)	1218
HpyAV	CCTTC	3 cut(s)	50, 194, 355
HpyCH4III	ACNGT	2 cut(s)	239, 608
HpyCH4IV	ACGT	1 cut(s)	974
HpyF10VI	GCNNNNNNNGC	6 cut(s)	500, 509, 574, 677, 1160, 1169
HpyF3I	CTNAG	3 cut(s)	252, 357, 702
HpySE526I	ACGT	1 cut(s)	974
Hsp92II	CATG	4 cut(s)	288, 319, 488, 905
HspAI	GCGC	2 cut(s)	575, 592
LmnI	GCTCC	4 cut(s)	1151, 1169, 1193, 1206
Lsp1109I	GCAGC	4 cut(s)	210, 293, 664, 1159
LweI	GCATC	3 cut(s)	73, 257, 1147
MaeI	CTAG	3 cut(s)	150, 278, 300
MaeII	ACGT	1 cut(s)	974
MaeIII	GTNAC	4 cut(s)	145, 446, 477, 578
MboII	GAAGA	7 cut(s)	72, 192, 431, 610, 700, 776, 917
MmeI	TCCRAC	3 cut(s)	699, 945, 1156
MseI	TTAA	5 cut(s)	408, 458, 489, 1008, 1065
Mva1269I	GAATGC	1 cut(s)	890
MvnI	CGCG	1 cut(s)	577
MwoI	GCNNNNNNNGC	6 cut(s)	500, 509, 574, 677, 1160, 1169
NlaIII	CATG	4 cut(s)	288, 319, 488, 905
NlaIV	GGNNCC	1 cut(s)	618
NmuCI	GTSAC	3 cut(s)	446, 477, 578
NspI	RCATGY	2 cut(s)	288, 488
NspV	TTCGAA	1 cut(s)	920
PaeI	GCATGC	1 cut(s)	288
PciI	ACATGT	1 cut(s)	484
PctI	GAATGC	1 cut(s)	890
PflMI	CCANNNNNTGG	1 cut(s)	833
PkrI	GCNGC	4 cut(s)	225, 283, 679, 1174
PscI	ACATGT	1 cut(s)	484
PspFI	CCCAGC	1 cut(s)	1175
PspN4I	GGNNCC	1 cut(s)	618
PspPI	GGNCC	3 cut(s)	235, 396, 1144
RsaI	GTAC	2 cut(s)	752, 1121
RsaNI	GTAC	2 cut(s)	751, 1120
SalI	GTCGAC	1 cut(s)	1212
SaqAI	TTAA	5 cut(s)	408, 458, 489, 1008, 1065
SatI	GCNGC	4 cut(s)	224, 282, 678, 1173
Sau96I	GGNCC	3 cut(s)	235, 396, 1144
SfaNI	GCATC	3 cut(s)	73, 257, 1147
SfuI	TTCGAA	1 cut(s)	920
SinI	GGWCC	2 cut(s)	235, 1144
SmiI	ATTTAAAT	1 cut(s)	1066
SmlI	CTYRAG	1 cut(s)	655
SmoI	CTYRAG	1 cut(s)	655
SphI	GCATGC	1 cut(s)	288
SsiI	CCGC	5 cut(s)	44, 334, 494, 680, 774
SspMI	CTAG	3 cut(s)	150, 278, 300
StyI	CCWWGG	2 cut(s)	392, 913
SwaI	ATTTAAAT	1 cut(s)	1066
TaaI	ACNGT	2 cut(s)	239, 608
TaiI	ACGT	1 cut(s)	977
TaqI	TCGA	4 cut(s)	762, 920, 1113, 1213
Tru1I	TTAA	5 cut(s)	408, 458, 489, 1008, 1065
Tru9I	TTAA	5 cut(s)	408, 458, 489, 1008, 1065
TscAI	CASTG	3 cut(s)	361, 613, 867
TseFI	GTSAC	3 cut(s)	446, 477, 578
TseI	GCWGC	4 cut(s)	223, 281, 677, 1172
Tsp45I	GTSAC	3 cut(s)	446, 477, 578
TspDTI	ATGAA	3 cut(s)	233, 651, 918
TspRI	CASTG	3 cut(s)	361, 613, 867
Van91I	CCANNNNNTGG	1 cut(s)	833
VpaK11BI	GGWCC	2 cut(s)	235, 1144
XapI	RAATTY	6 cut(s)	65, 778, 956, 1004, 1040, 1061
XceI	RCATGY	2 cut(s)	288, 488
XmiI	GTMKAC	1 cut(s)	1213
XspI	CTAG	3 cut(s)	150, 278, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.