Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004702.1

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Forward (+)

35692 .. 36387

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004702.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ctgtgcccagctagccctatctctattctctctcttccccatctttctctggctcaacttctctgttatctctcttccctcatttatcctcatttatctgagactgaagcatcaatagacaacacaacaaagggttgcagcaaggaagggactcgagctgatgaaacacgaactgatgatgaagcattcaactatgtcccagactacagaagattgaaggttgaagacgtgaaggctatgacgcttaagacagtagaggacgcggaaaggttctattctgcctattccttggcacttggctttggatttaggaaggataccaaaggagaggttaaaggtatgatccggaggagacaatggctttgcaacaagcaagggactcgagctaaaaagtggttcatactcgacggaaggggtcgtcctcctcggagaattacaaaggtaaattgcaaggctaaatttagggtcaattacaacgagattgtaggagcttatatggtgaaagcctttgttccagagcattctcacgagttagcaactggaaaccagactgccttcattcgttcgcatcgaaatgtctgcaaatcagacttgccccatgcaaatacaatgtctaaagtgtcaatcagaccttgccatgcgtatgagtacatggtggagcaggcggggggatataagacagtgggatttacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05160 map03013 map05160

Pfam Domains

Protein Families

PCI

Protein Analysis

231

Amino Acids

26.21

Weight (kDa)

9.41

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	263
AccIII	TCCGGA	1 cut(s)	345
AciI	CCGC	2 cut(s)	263, 665
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	458
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	650
AflII	CTTAAG	1 cut(s)	245
AgsI	TTSAA	3 cut(s)	190, 217, 224
AjiI	CACGTC	1 cut(s)	229
AluBI	AGCT	4 cut(s)	11, 158, 386, 491
AluI	AGCT	4 cut(s)	11, 158, 386, 491
Alw26I	GTCTC	2 cut(s)	95, 346
AlwI	GGATC	1 cut(s)	337
Ama87I	CYCGRG	2 cut(s)	153, 381
Aor13HI	TCCGGA	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	138
ApoI	RAATTY	1 cut(s)	458
ArsI	GACNNNNNNTTYG	4 cut(s)	345, 377, 596, 628
AsuHPI	GGTGA	1 cut(s)	511
AsuNHI	GCTAGC	1 cut(s)	11
AvaI	CYCGRG	2 cut(s)	153, 381
BaeGI	GKGCMC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	150
BccI	CCATC	1 cut(s)	48
BcgI	CGANNNNNNTGC	4 cut(s)	362, 396, 561, 595
BciVI	GTATCC	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	95, 346
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	205
BfrI	CTTAAG	1 cut(s)	245
BfuI	GTATCC	1 cut(s)	310
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
BmeT110I	CYCGRG	2 cut(s)	153, 381
BmgBI	CACGTC	1 cut(s)	229
BmsI	GCATC	2 cut(s)	119, 577
BmtI	GCTAGC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	288, 425
BsaWI	WCCGGW	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	544
BseAI	TCCGGA	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	288, 425
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	544
BseRI	GAGGAG	2 cut(s)	364, 414
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	150
BseYI	CCCAGC	1 cut(s)	7
Bsh1236I	CGCG	1 cut(s)	263
BsiHKCI	CYCGRG	2 cut(s)	153, 381
BsiSI	CCGG	1 cut(s)	346
BslFI	GGGAC	3 cut(s)	163, 182, 391
BsmAI	GTCTC	2 cut(s)	95, 346
BsmFI	GGGAC	3 cut(s)	163, 182, 391
BsmI	GAATGC	2 cut(s)	185, 520
BsoBI	CYCGRG	2 cut(s)	153, 381
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	345
Bsp143I	GATC	1 cut(s)	342
BspACI	CCGC	2 cut(s)	263, 665
BspCNI	CTCAG	1 cut(s)	91
BspEI	TCCGGA	1 cut(s)	345
BspFNI	CGCG	1 cut(s)	263
BspOI	GCTAGC	1 cut(s)	15
BspPI	GGATC	1 cut(s)	337
BspTI	CTTAAG	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	544
BssECI	CCNNGG	2 cut(s)	288, 425
BssMI	GATC	1 cut(s)	342
BssSI	CACGAG	1 cut(s)	527
BssT1I	CCWWGG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	527
Bst4CI	ACNGT	2 cut(s)	253, 682
Bst6I	CTCTTC	2 cut(s)	39, 79
BstAFI	CTTAAG	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	13, 663
BstDEI	CTNAG	2 cut(s)	99, 693
BstFNI	CGCG	1 cut(s)	263
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	2 cut(s)	95, 346
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	150
BstV2I	GAAGAC	1 cut(s)	231
BsuI	GTATCC	1 cut(s)	310
BtrI	CACGTC	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	687
Cac8I	GCNNGC	2 cut(s)	13, 663
CseI	GACGC	2 cut(s)	250, 269
Csp6I	GTAC	1 cut(s)	649
CviAII	CATG	3 cut(s)	599, 638, 652
CviQI	GTAC	1 cut(s)	649
DdeI	CTNAG	2 cut(s)	99, 693
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
Eam1104I	CTCTTC	2 cut(s)	39, 79
EarI	CTCTTC	2 cut(s)	39, 79
Eco130I	CCWWGG	1 cut(s)	288
Eco57I	CTGAAG	1 cut(s)	126
Eco88I	CYCGRG	2 cut(s)	153, 381
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	3 cut(s)	602, 641, 655
FaqI	GGGAC	3 cut(s)	163, 182, 391
FatI	CATG	3 cut(s)	598, 637, 651
FauI	CCCGC	1 cut(s)	658
Fnu4HI	GCNGC	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	139
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	1 cut(s)	139
GsaI	CCCAGC	1 cut(s)	11
HapII	CCGG	1 cut(s)	346
HgaI	GACGC	2 cut(s)	250, 269
Hin1II	CATG	3 cut(s)	602, 641, 655
HinfI	GANTC	2 cut(s)	151, 379
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	1 cut(s)	511
Hpy188I	TCNGA	4 cut(s)	100, 429, 589, 629
Hpy188III	TCNNGA	3 cut(s)	346, 515, 527
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	6 cut(s)	140, 211, 226, 307, 405, 565
HpyCH4III	ACNGT	2 cut(s)	253, 682
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	5 cut(s)	138, 366, 450, 582, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	2 cut(s)	99, 693
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	602, 641, 655
Kpn2I	TCCGGA	1 cut(s)	345
Kzo9I	GATC	1 cut(s)	342
LmnI	GCTCC	2 cut(s)	488, 658
LpnPI	CCDG	8 cut(s)	21, 35, 213, 359, 525, 528, 560, 647
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	2 cut(s)	119, 577
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	228
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	4 cut(s)	26, 66, 222, 236
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	4 cut(s)	432, 445, 458, 469
MlyI	GAGTC	2 cut(s)	145, 373
MnlI	CCTC	7 cut(s)	89, 99, 250, 322, 342, 432, 435
MroI	TCCGGA	1 cut(s)	345
MseI	TTAA	2 cut(s)	246, 333
MslI	CAYNNNNRTG	2 cut(s)	573, 642
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	1 cut(s)	346
Mva1269I	GAATGC	2 cut(s)	185, 520
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	12
NdeII	GATC	1 cut(s)	342
NheI	GCTAGC	1 cut(s)	11
NlaIII	CATG	3 cut(s)	602, 641, 655
PaeR7I	CTCGAG	2 cut(s)	153, 381
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PctI	GAATGC	2 cut(s)	185, 520
PkrI	GCNGC	1 cut(s)	140
PleI	GAGTC	2 cut(s)	145, 373
PpsI	GAGTC	2 cut(s)	145, 373
PspFI	CCCAGC	1 cut(s)	7
PspXI	VCTCGAGB	2 cut(s)	153, 381
RsaI	GTAC	1 cut(s)	650
RsaNI	GTAC	1 cut(s)	649
RseI	CAYNNNNRTG	2 cut(s)	573, 642
SaqAI	TTAA	2 cut(s)	246, 333
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	1 cut(s)	342
SchI	GAGTC	2 cut(s)	145, 373
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	119, 577
SfcI	CTRYAG	1 cut(s)	205
Sfr274I	CTCGAG	2 cut(s)	153, 381
SlaI	CTCGAG	2 cut(s)	153, 381
SmiMI	CAYNNNNRTG	2 cut(s)	573, 642
SmlI	CTYRAG	3 cut(s)	153, 245, 381
SmoI	CTYRAG	3 cut(s)	153, 245, 381
Sse9I	AATT	4 cut(s)	432, 445, 458, 469
SsiI	CCGC	2 cut(s)	263, 665
SspMI	CTAG	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	253, 682
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	4 cut(s)	154, 382, 405, 571
TasI	AATT	4 cut(s)	432, 445, 458, 469
TatI	WGTACW	1 cut(s)	648
Tru1I	TTAA	2 cut(s)	246, 333
Tru9I	TTAA	2 cut(s)	246, 333
TscAI	CASTG	1 cut(s)	687
TseI	GCWGC	1 cut(s)	138
TspDTI	ATGAA	4 cut(s)	177, 195, 388, 547
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	1 cut(s)	687
Vha464I	CTTAAG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	458
XhoI	CTCGAG	2 cut(s)	153, 381
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.