Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Forward (+)

32740671 .. 32844664

Gene Structure 103994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG274600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAACTTTGAGCATCCCAGTTCGAGTGATTGCCGATACACAGAGGTCCAATCTGCTGATCAGGACTCAGCTGAACCACCACAGGAAGAGAGGGTCAGTTATGGGGATGAGAATTTTACTGCCAAAAGCCGTGTTGGGAAAAGTTTTGCTGAATTGACTGCGGAGGATGTAGAAGGAAGAGAATTCGCCACTCTGGATGATGCCGAAAATTGGTATAGAATGTATGCAACTGCACTTGGTTTTATGACAAGATTGCAGAGGGTTACTAGAGGGATTGGAGGCAGGATAACGAGGCGAAGATTGGTTTGTAATAAAGAAGGTAAAAGAGAAGCAAAGTGGCTGCAAAAAGAGGACCGTGTTCGTAATGCTAAGCAAGAGACCCGATGCAACTGCCTAGCAGCATGCTGTATCCATTTCAATAAGAATAGTCAAACATACATCATCACTGAATTCAAAACTGAACACAATCATGATCTTGCCATGCATTCCAATGGTTCGGTTACTCATCCAGACATGGGACATCTTGGTGCAAGGCGCACTTGTTCAGTCAGCACCTCTAGGGCAGATGACTACACGGTGAAATGCAATGGGGGGTTTGAGTTTGTGGGAGACACTGAGAAGGATCTTTTCAACAAGATAGAGGCAGAGCCAAGGGCCAAATTGTTTAAGCAGGGGGAAGAAACTGCACCAATAGTGGAGGTGAGTGACATTACAATGCCACCTTGGAGCATTAACCTAGTAGGGTTCGGCGATGAGTATAGATGCGATCACGTTGACATACCACGGGGAGTGACTTATAGCTATGTCTCATTGTCACCACATGTTAAAGCGGTTAGTGCCGACACAGCATCAACATTACTTCGGCAGATTGCTGGTCTGACATCAATAGCAACAGAGCAGTCGCTAAAGGCGCGTGACGAGATTTTGCGCCTGAAGAGGGACAGTGAGCTGGCACTCAAGACAAAGGAAGCTGAAGCTGCGGTGCTGAAGAGGGAATTAGCTGAGTGTCGGCGAGAGTTGGAATTGGTGAAGTCGGCAGATAAATATAGGTACAGAACCATCGAAGAGGTTGGCGGGAATTCTAAAAAGCAGGTTAGTCAGCAAAATGAATTGCAAATGTTGGCACTAAACTGCATTATAGGGATCGACTGTGCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

386

Amino Acids

43.53

Weight (kDa)

6.07

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	71 - 160	8.2e-17	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1081
AccII	CGCG	1 cut(s)	913
AciI	CCGC	4 cut(s)	161, 830, 980, 1074
AclWI	GGATC	2 cut(s)	630, 1151
AcsI	RAATTY	4 cut(s)	112, 182, 449, 1078
AcuI	CTGAAG	3 cut(s)	953, 993, 1007
AfaI	GTAC	1 cut(s)	1052
AfiI	CCNNNNNNNGG	3 cut(s)	210, 515, 937
AflIII	ACRYGT	1 cut(s)	820
AgsI	TTSAA	3 cut(s)	418, 454, 631
AluBI	AGCT	6 cut(s)	71, 801, 949, 971, 977, 1001
AluI	AGCT	6 cut(s)	71, 801, 949, 971, 977, 1001
Alw26I	GTCTC	3 cut(s)	371, 603, 811
AlwI	GGATC	2 cut(s)	630, 1151
AoxI	GGCC	1 cut(s)	654
ApeKI	GCWGC	3 cut(s)	340, 398, 977
ApoI	RAATTY	4 cut(s)	112, 182, 449, 1078
AspLEI	GCGC	3 cut(s)	537, 913, 930
AspS9I	GGNCC	3 cut(s)	46, 352, 654
AsuHPI	GGTGA	4 cut(s)	589, 712, 807, 1039
AvaII	GGWCC	2 cut(s)	46, 352
BbvI	GCAGC	3 cut(s)	327, 410, 964
BccI	CCATC	1 cut(s)	1067
BceAI	ACGGC	1 cut(s)	114
BcgI	CGANNNNNNTGC	2 cut(s)	372, 406
BciVI	GTATCC	1 cut(s)	419
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	3 cut(s)	371, 603, 811
BfaI	CTAG	4 cut(s)	267, 395, 558, 737
BfuAI	ACCTGC	1 cut(s)	1081
BfuI	GTATCC	1 cut(s)	419
BisI	GCNGC	3 cut(s)	341, 399, 978
BlpI	GCTNAGC	1 cut(s)	369
BlsI	GCNGC	3 cut(s)	342, 400, 979
Bme18I	GGWCC	2 cut(s)	46, 352
BmgT120I	GGNCC	3 cut(s)	46, 352, 654
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	5 cut(s)	22, 190, 374, 752, 857
BmuI	ACTGGG	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	941
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	3 cut(s)	650, 722, 782
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 515, 937
Bse1I	ACTGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	592
BseDI	CCNNGG	3 cut(s)	650, 722, 782
BseGI	GGATG	5 cut(s)	13, 112, 172, 202, 505
BseLI	CCNNNNNNNGG	3 cut(s)	210, 515, 937
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	3 cut(s)	81, 606, 993
BseNI	ACTGG	1 cut(s)	18
BseXI	GCAGC	3 cut(s)	327, 410, 964
BsgI	GTGCAG	2 cut(s)	216, 669
Bsh1236I	CGCG	1 cut(s)	913
BshFI	GGCC	1 cut(s)	656
BslFI	GGGAC	2 cut(s)	531, 953
BslI	CCNNNNNNNGG	3 cut(s)	210, 515, 937
BsmAI	GTCTC	3 cut(s)	371, 603, 811
BsmFI	GGGAC	2 cut(s)	531, 953
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	1 cut(s)	656
Bso31I	GGTCTC	1 cut(s)	371
Bsp143I	GATC	5 cut(s)	58, 472, 622, 766, 1143
Bsp1720I	GCTNAGC	1 cut(s)	369
BspACI	CCGC	4 cut(s)	161, 830, 980, 1074
BspANI	GGCC	1 cut(s)	656
BspCNI	CTCAG	3 cut(s)	80, 607, 994
BspFNI	CGCG	1 cut(s)	913
BspHI	TCATGA	1 cut(s)	469
BspMI	ACCTGC	1 cut(s)	1081
BspPI	GGATC	2 cut(s)	630, 1151
BspTNI	GGTCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	3 cut(s)	650, 722, 782
BssMI	GATC	5 cut(s)	58, 472, 622, 766, 1143
BssT1I	CCWWGG	2 cut(s)	650, 722
Bst4CI	ACNGT	4 cut(s)	356, 577, 944, 1151
Bst6I	CTCTTC	5 cut(s)	81, 172, 929, 983, 1059
BstC8I	GCNNGC	2 cut(s)	403, 951
BstDEI	CTNAG	4 cut(s)	67, 369, 615, 1002
BstDSI	CCRYGG	1 cut(s)	782
BstF5I	GGATG	5 cut(s)	13, 112, 172, 202, 505
BstFNI	CGCG	1 cut(s)	913
BstHHI	GCGC	3 cut(s)	537, 913, 930
BstKTI	GATC	5 cut(s)	61, 475, 625, 769, 1146
BstMAI	GTCTC	3 cut(s)	371, 603, 811
BstMBI	GATC	5 cut(s)	58, 472, 622, 766, 1143
BstMWI	GCNNNNNNNGC	4 cut(s)	836, 845, 910, 977
BstNSI	RCATGY	2 cut(s)	405, 824
BstUI	CGCG	1 cut(s)	913
BstV1I	GCAGC	3 cut(s)	327, 410, 964
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuI	GTATCC	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	656
BtgI	CCRYGG	1 cut(s)	782
BtgZI	GCGATG	1 cut(s)	765
BtsCI	GGATG	5 cut(s)	13, 112, 172, 202, 505
BtsIMutI	CAGTG	3 cut(s)	444, 612, 949
BveI	ACCTGC	1 cut(s)	1081
Cac8I	GCNNGC	2 cut(s)	403, 951
CciI	TCATGA	1 cut(s)	469
CfoI	GCGC	3 cut(s)	537, 913, 930
Cfr13I	GGNCC	3 cut(s)	46, 352, 654
Csp6I	GTAC	1 cut(s)	1051
CviAII	CATG	5 cut(s)	402, 470, 481, 514, 821
CviQI	GTAC	1 cut(s)	1051
DdeI	CTNAG	4 cut(s)	67, 369, 615, 1002
DpnI	GATC	5 cut(s)	60, 474, 624, 768, 1145
DpnII	GATC	5 cut(s)	58, 472, 622, 766, 1143
Eam1104I	CTCTTC	5 cut(s)	81, 172, 929, 983, 1059
EarI	CTCTTC	5 cut(s)	81, 172, 929, 983, 1059
Eco130I	CCWWGG	2 cut(s)	650, 722
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	2 cut(s)	46, 352
Eco57I	CTGAAG	3 cut(s)	953, 993, 1007
EcoRI	GAATTC	3 cut(s)	182, 449, 1078
EcoT14I	CCWWGG	2 cut(s)	650, 722
EcoT22I	ATGCAT	1 cut(s)	486
ErhI	CCWWGG	2 cut(s)	650, 722
FaeI	CATG	5 cut(s)	405, 473, 484, 517, 824
FalI	AAGNNNNNCTT	2 cut(s)	523, 555
FaqI	GGGAC	2 cut(s)	531, 953
FatI	CATG	5 cut(s)	401, 469, 480, 513, 820
FauI	CCCGC	1 cut(s)	1067
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	3 cut(s)	341, 399, 978
FokI	GGATG	4 cut(s)	119, 179, 209, 492
Fsp4HI	GCNGC	3 cut(s)	341, 399, 978
FspBI	CTAG	4 cut(s)	267, 395, 558, 737
GlaI	GCGC	3 cut(s)	536, 912, 929
GluI	GCNGC	3 cut(s)	341, 399, 978
HaeIII	GGCC	1 cut(s)	656
HhaI	GCGC	3 cut(s)	537, 913, 930
Hin1II	CATG	5 cut(s)	405, 473, 484, 517, 824
Hin6I	GCGC	3 cut(s)	535, 911, 928
HinP1I	GCGC	3 cut(s)	535, 911, 928
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HinfI	GANTC	1 cut(s)	65
HphI	GGTGA	4 cut(s)	589, 712, 807, 1039
Hpy166II	GTNNAC	1 cut(s)	775
Hpy188I	TCNGA	1 cut(s)	879
Hpy188III	TCNNGA	5 cut(s)	62, 194, 470, 509, 958
Hpy8I	GTNNAC	1 cut(s)	775
HpyAV	CCTTC	3 cut(s)	167, 311, 613
HpyCH4III	ACNGT	4 cut(s)	356, 577, 944, 1151
HpyCH4IV	ACGT	1 cut(s)	771
HpyF10VI	GCNNNNNNNGC	4 cut(s)	836, 845, 910, 977
HpyF3I	CTNAG	4 cut(s)	67, 369, 615, 1002
HpySE526I	ACGT	1 cut(s)	771
Hsp92II	CATG	5 cut(s)	405, 473, 484, 517, 824
HspAI	GCGC	3 cut(s)	535, 911, 928
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	5 cut(s)	58, 472, 622, 766, 1143
LmnI	GCTCC	1 cut(s)	726
Lsp1109I	GCAGC	3 cut(s)	327, 410, 964
LweI	GCATC	5 cut(s)	22, 190, 374, 752, 857
MaeI	CTAG	4 cut(s)	267, 395, 558, 737
MaeII	ACGT	1 cut(s)	771
MaeIII	GTNAC	6 cut(s)	262, 499, 704, 790, 813, 914
MalI	GATC	5 cut(s)	60, 474, 624, 768, 1145
MboI	GATC	5 cut(s)	58, 472, 622, 766, 1143
MboII	GAAGA	7 cut(s)	98, 189, 309, 689, 946, 1000, 1076
MflI	RGATCY	1 cut(s)	622
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	999
Mph1103I	ATGCAT	1 cut(s)	486
MseI	TTAA	3 cut(s)	666, 732, 825
MslI	CAYNNNNRTG	4 cut(s)	468, 489, 525, 713
MspA1I	CMGCKG	1 cut(s)	71
Mva1269I	GAATGC	1 cut(s)	484
MvnI	CGCG	1 cut(s)	913
MwoI	GCNNNNNNNGC	4 cut(s)	836, 845, 910, 977
NdeII	GATC	5 cut(s)	58, 472, 622, 766, 1143
NlaIII	CATG	5 cut(s)	405, 473, 484, 517, 824
NmuCI	GTSAC	4 cut(s)	704, 790, 813, 914
NsiI	ATGCAT	1 cut(s)	486
NspI	RCATGY	2 cut(s)	405, 824
PaeI	GCATGC	1 cut(s)	405
PagI	TCATGA	1 cut(s)	469
PciI	ACATGT	1 cut(s)	820
PctI	GAATGC	1 cut(s)	484
PkrI	GCNGC	3 cut(s)	342, 400, 979
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PscI	ACATGT	1 cut(s)	820
PspPI	GGNCC	3 cut(s)	46, 352, 654
PsuI	RGATCY	1 cut(s)	622
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	1 cut(s)	1052
RsaNI	GTAC	1 cut(s)	1051
RseI	CAYNNNNRTG	4 cut(s)	468, 489, 525, 713
SaqAI	TTAA	3 cut(s)	666, 732, 825
SatI	GCNGC	3 cut(s)	341, 399, 978
Sau3AI	GATC	5 cut(s)	58, 472, 622, 766, 1143
Sau96I	GGNCC	3 cut(s)	46, 352, 654
SchI	GAGTC	1 cut(s)	59
SfaNI	GCATC	5 cut(s)	22, 190, 374, 752, 857
SinI	GGWCC	2 cut(s)	46, 352
SmiMI	CAYNNNNRTG	4 cut(s)	468, 489, 525, 713
SmlI	CTYRAG	1 cut(s)	956
SmoI	CTYRAG	1 cut(s)	956
SphI	GCATGC	1 cut(s)	405
SsiI	CCGC	4 cut(s)	161, 830, 980, 1074
SspMI	CTAG	4 cut(s)	267, 395, 558, 737
StyI	CCWWGG	2 cut(s)	650, 722
TaaI	ACNGT	4 cut(s)	356, 577, 944, 1151
TaiI	ACGT	1 cut(s)	774
TaqI	TCGA	3 cut(s)	23, 1062, 1146
Tru1I	TTAA	3 cut(s)	666, 732, 825
Tru9I	TTAA	3 cut(s)	666, 732, 825
TscAI	CASTG	3 cut(s)	451, 619, 949
TseFI	GTSAC	4 cut(s)	704, 790, 813, 914
TseI	GCWGC	3 cut(s)	340, 398, 977
Tsp45I	GTSAC	4 cut(s)	704, 790, 813, 914
TspDTI	ATGAA	2 cut(s)	17, 1122
TspRI	CASTG	3 cut(s)	451, 619, 949
VpaK11BI	GGWCC	2 cut(s)	46, 352
XapI	RAATTY	4 cut(s)	112, 182, 449, 1078
XceI	RCATGY	2 cut(s)	405, 824
XspI	CTAG	4 cut(s)	267, 395, 558, 737
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.