Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Reverse (-)

30554882 .. 30557080

Gene Structure 2199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G021910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGCTTAGTTTGCTGACGTCGATTTTTGATTTTCAAATAGGCTTTTCAGACATATTGGTTTATCCAAGCATGAACTTTGAGCATCCCAGTTCGAGTGATTGCCGATACACAGAGGTCCAATCTGCTGATCAGGACTCAGCTGAACCACAACAGGAAGAGAGGGTCAGTTATGGGGATGAGAATTTTACTGCCAAAAGCCGTGTTGGGAAAAGTTCTGCAGAATTGACTGCGGAGGAGGTAGAAGGAAGAGAATTCGCCACTCTGGATGATGCCGAAAATTGGTATAGAATGTATGCAACTGCACTTGGTTTTATGACAAGATTGCAGAGGGTTACTAGAGGGATTGGAGGCAGGATAACGAGGCGAAGATTGGTTTGTAATAAAGAAGTTACTAATGCAGACATGGGACACCTCGGTGCAAGGCGCACTTGTTCAGTCAGCACCTCTAGGGCAGATGACTGCATGGTGAAAAGCAATGAGGGGTATGAGTTTGTGGGGGACACTGAGAAGGATCTTTTCAACAAGATAGAGGCAGAGCCAAGGGCCAAGTTGTTTAAGCAGGGGAAAGAAACTGCACCAATAGTGGAGGTGAGTGACATTACAATGCCACCTTGGAGCATTAACCCAGTAGGGTTCGGCGATGAGTATAGATGCGATCACGTTGACATACCACGGGGAGTGACTTATAGCTATGTCTCATTGTCACCACATGTTAAAGCGGTTAGTGCCGACACAGCGTCAACATTACTTCGGCAGATTGCTGGTCTGACATCAATAGCAACAGAGCAGTCGCTAAAGGCGCGTGACGAGATTTTGCGCCTGAAGAGGGACAGTGAGCTGGCACTCAAGACAAAGGAAGCTGAAGCTGCGGTGCTGAAGAGGGAATTAGCTGAGTGTCGGCGAGAGTTGGAATTGGTGAAGTCGGCAGATAAATATAGGTACAGAACCATCGAAGAGGTTGGCAGGAATTCTAAAAAGCAGATTACAGAGGATAACTGCAATAGGGGTCAATCTCCAGAGGGTGGTGCTGATATTCAACTTTTATGCTCACTGGGTGGGTGGAAAAGTGGCTTTGCGCCAGACAAAGATATGGAATTTGATTCAAATACTTCTACTCTTGGACTAACAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

377

Amino Acids

42.03

Weight (kDa)

5.16

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	20
AccB7I	CCANNNNNTGG	1 cut(s)	1022
AccII	CGCG	1 cut(s)	802
AciI	CCGC	3 cut(s)	230, 719, 869
AclWI	GGATC	1 cut(s)	519
AcsI	RAATTY	4 cut(s)	181, 251, 967, 1094
AcuI	CTGAAG	3 cut(s)	842, 882, 896
AcyI	GRCGYC	1 cut(s)	17
AdeI	CACNNNGTG	1 cut(s)	1055
AfaI	GTAC	1 cut(s)	941
AfiI	CCNNNNNNNGG	3 cut(s)	279, 826, 1022
AflIII	ACRYGT	1 cut(s)	709
AgsI	TTSAA	4 cut(s)	35, 520, 1037, 1104
AhdI	GACNNNNNGTC	1 cut(s)	736
AleI	CACNNNNGTG	1 cut(s)	414
AluBI	AGCT	6 cut(s)	140, 690, 838, 860, 866, 890
AluI	AGCT	6 cut(s)	140, 690, 838, 860, 866, 890
Alw26I	GTCTC	1 cut(s)	700
AlwI	GGATC	1 cut(s)	519
AoxI	GGCC	1 cut(s)	543
ApeKI	GCWGC	1 cut(s)	866
ApoI	RAATTY	4 cut(s)	181, 251, 967, 1094
AspLEI	GCGC	4 cut(s)	426, 802, 819, 1078
AspS9I	GGNCC	2 cut(s)	115, 543
AsuHPI	GGTGA	4 cut(s)	478, 601, 696, 928
AvaII	GGWCC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	853
BccI	CCATC	1 cut(s)	956
BceAI	ACGGC	1 cut(s)	183
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	700
BfaI	CTAG	2 cut(s)	336, 447
BfmI	CTRYAG	1 cut(s)	216
BisI	GCNGC	1 cut(s)	867
BlsI	GCNGC	1 cut(s)	868
Bme18I	GGWCC	1 cut(s)	115
BmeRI	GACNNNNNGTC	1 cut(s)	736
BmgT120I	GGNCC	2 cut(s)	115, 543
BmrI	ACTGGG	3 cut(s)	81, 620, 1061
BmsI	GCATC	3 cut(s)	91, 259, 641
BmuI	ACTGGG	3 cut(s)	81, 620, 1061
BpmI	CTGGAG	1 cut(s)	999
BpuEI	CTTGAG	1 cut(s)	830
BsaHI	GRCGYC	1 cut(s)	17
BsaJI	CCNNGG	4 cut(s)	412, 539, 611, 671
Bsc4I	CCNNNNNNNGG	3 cut(s)	279, 826, 1022
Bse1I	ACTGG	3 cut(s)	87, 626, 1056
Bse3DI	GCAATG	1 cut(s)	481
BseDI	CCNNGG	4 cut(s)	412, 539, 611, 671
BseGI	GGATG	3 cut(s)	82, 181, 271
BseLI	CCNNNNNNNGG	3 cut(s)	279, 826, 1022
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	3 cut(s)	150, 495, 882
BseNI	ACTGG	3 cut(s)	87, 626, 1056
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	853
BsgI	GTGCAG	2 cut(s)	285, 558
Bsh1236I	CGCG	1 cut(s)	802
BshFI	GGCC	1 cut(s)	545
BslFI	GGGAC	3 cut(s)	420, 512, 842
BslI	CCNNNNNNNGG	3 cut(s)	279, 826, 1022
BsmAI	GTCTC	1 cut(s)	700
BsmFI	GGGAC	3 cut(s)	420, 512, 842
BsnI	GGCC	1 cut(s)	545
Bsp143I	GATC	3 cut(s)	127, 511, 655
BspACI	CCGC	3 cut(s)	230, 719, 869
BspANI	GGCC	1 cut(s)	545
BspCNI	CTCAG	3 cut(s)	149, 496, 883
BspFNI	CGCG	1 cut(s)	802
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	1 cut(s)	519
BsrDI	GCAATG	1 cut(s)	481
BsrI	ACTGG	3 cut(s)	87, 626, 1056
BssECI	CCNNGG	4 cut(s)	412, 539, 611, 671
BssMI	GATC	3 cut(s)	127, 511, 655
BssNI	GRCGYC	1 cut(s)	17
BssT1I	CCWWGG	2 cut(s)	539, 611
Bst4CI	ACNGT	1 cut(s)	833
Bst6I	CTCTTC	5 cut(s)	150, 241, 818, 872, 948
BstACI	GRCGYC	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	840
BstDEI	CTNAG	4 cut(s)	5, 136, 504, 891
BstDSI	CCRYGG	1 cut(s)	671
BstF5I	GGATG	3 cut(s)	82, 181, 271
BstFNI	CGCG	1 cut(s)	802
BstHHI	GCGC	4 cut(s)	426, 802, 819, 1078
BstKTI	GATC	3 cut(s)	130, 514, 658
BstMAI	GTCTC	1 cut(s)	700
BstMBI	GATC	3 cut(s)	127, 511, 655
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 725, 734, 799, 866
BstNSI	RCATGY	1 cut(s)	713
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	802
BstV1I	GCAGC	1 cut(s)	853
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	1 cut(s)	545
BtgI	CCRYGG	1 cut(s)	671
BtgZI	GCGATG	1 cut(s)	654
BtsCI	GGATG	3 cut(s)	82, 181, 271
BtsIMutI	CAGTG	3 cut(s)	501, 838, 1049
Cac8I	GCNNGC	1 cut(s)	840
CfoI	GCGC	4 cut(s)	426, 802, 819, 1078
Cfr13I	GGNCC	2 cut(s)	115, 543
CseI	GACGC	1 cut(s)	726
Csp6I	GTAC	1 cut(s)	940
CviAII	CATG	4 cut(s)	70, 403, 463, 710
CviQI	GTAC	1 cut(s)	940
DdeI	CTNAG	4 cut(s)	5, 136, 504, 891
DpnI	GATC	3 cut(s)	129, 513, 657
DpnII	GATC	3 cut(s)	127, 511, 655
DraIII	CACNNNGTG	1 cut(s)	1055
DriI	GACNNNNNGTC	1 cut(s)	736
Eam1104I	CTCTTC	5 cut(s)	150, 241, 818, 872, 948
Eam1105I	GACNNNNNGTC	1 cut(s)	736
EarI	CTCTTC	5 cut(s)	150, 241, 818, 872, 948
Eco130I	CCWWGG	2 cut(s)	539, 611
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	3 cut(s)	842, 882, 896
EcoRI	GAATTC	2 cut(s)	251, 967
EcoT14I	CCWWGG	2 cut(s)	539, 611
ErhI	CCWWGG	2 cut(s)	539, 611
FaeI	CATG	4 cut(s)	73, 406, 466, 713
FalI	AAGNNNNNCTT	2 cut(s)	412, 444
FaqI	GGGAC	3 cut(s)	420, 512, 842
FatI	CATG	4 cut(s)	69, 402, 462, 709
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	867
FokI	GGATG	3 cut(s)	69, 188, 278
Fsp4HI	GCNGC	1 cut(s)	867
FspBI	CTAG	2 cut(s)	336, 447
GlaI	GCGC	4 cut(s)	425, 801, 818, 1077
GluI	GCNGC	1 cut(s)	867
GsuI	CTGGAG	1 cut(s)	999
HaeIII	GGCC	1 cut(s)	545
HgaI	GACGC	1 cut(s)	726
HhaI	GCGC	4 cut(s)	426, 802, 819, 1078
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	4 cut(s)	73, 406, 466, 713
Hin6I	GCGC	4 cut(s)	424, 800, 817, 1076
HinP1I	GCGC	4 cut(s)	424, 800, 817, 1076
HincII	GTYRAC	2 cut(s)	664, 741
HindII	GTYRAC	2 cut(s)	664, 741
HinfI	GANTC	2 cut(s)	134, 1100
HphI	GGTGA	4 cut(s)	478, 601, 696, 928
Hpy166II	GTNNAC	2 cut(s)	664, 741
Hpy188I	TCNGA	2 cut(s)	49, 768
Hpy188III	TCNNGA	4 cut(s)	131, 263, 847, 1016
Hpy8I	GTNNAC	2 cut(s)	664, 741
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	2 cut(s)	236, 502
HpyCH4III	ACNGT	1 cut(s)	833
HpyCH4IV	ACGT	2 cut(s)	17, 660
HpyCH4V	TGCA	9 cut(s)	218, 296, 302, 325, 398, 419, 462, 575, 999
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 725, 734, 799, 866
HpyF3I	CTNAG	4 cut(s)	5, 136, 504, 891
HpySE526I	ACGT	2 cut(s)	17, 660
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	4 cut(s)	73, 406, 466, 713
HspAI	GCGC	4 cut(s)	424, 800, 817, 1076
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	127, 511, 655
LmnI	GCTCC	1 cut(s)	615
Lsp1109I	GCAGC	1 cut(s)	853
LweI	GCATC	3 cut(s)	91, 259, 641
MaeI	CTAG	2 cut(s)	336, 447
MaeII	ACGT	2 cut(s)	17, 660
MaeIII	GTNAC	6 cut(s)	331, 388, 593, 679, 702, 803
MalI	GATC	3 cut(s)	129, 513, 657
MboI	GATC	3 cut(s)	127, 511, 655
MboII	GAAGA	6 cut(s)	167, 258, 378, 835, 889, 965
MflI	RGATCY	1 cut(s)	511
MluCI	AATT	8 cut(s)	181, 221, 251, 277, 884, 911, 967, 1094
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	888
MseI	TTAA	3 cut(s)	555, 621, 714
MslI	CAYNNNNRTG	2 cut(s)	414, 602
MspA1I	CMGCKG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	802
MwoI	GCNNNNNNNGC	5 cut(s)	10, 725, 734, 799, 866
NdeII	GATC	3 cut(s)	127, 511, 655
NlaIII	CATG	4 cut(s)	73, 406, 466, 713
NmuCI	GTSAC	4 cut(s)	593, 679, 702, 803
NspI	RCATGY	1 cut(s)	713
OliI	CACNNNNGTG	1 cut(s)	414
PciI	ACATGT	1 cut(s)	709
PfeI	GAWTC	1 cut(s)	1100
PflMI	CCANNNNNTGG	1 cut(s)	1022
PkrI	GCNGC	1 cut(s)	868
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PscI	ACATGT	1 cut(s)	709
PspPI	GGNCC	2 cut(s)	115, 543
PstI	CTGCAG	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	511
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	941
RsaNI	GTAC	1 cut(s)	940
RseI	CAYNNNNRTG	2 cut(s)	414, 602
SaqAI	TTAA	3 cut(s)	555, 621, 714
SatI	GCNGC	1 cut(s)	867
Sau3AI	GATC	3 cut(s)	127, 511, 655
Sau96I	GGNCC	2 cut(s)	115, 543
SchI	GAGTC	1 cut(s)	128
SfaNI	GCATC	3 cut(s)	91, 259, 641
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	2 cut(s)	414, 602
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
Sse9I	AATT	8 cut(s)	181, 221, 251, 277, 884, 911, 967, 1094
SsiI	CCGC	3 cut(s)	230, 719, 869
SspMI	CTAG	2 cut(s)	336, 447
StyI	CCWWGG	2 cut(s)	539, 611
TaaI	ACNGT	1 cut(s)	833
TaiI	ACGT	2 cut(s)	20, 663
TaqI	TCGA	3 cut(s)	20, 92, 951
TasI	AATT	8 cut(s)	181, 221, 251, 277, 884, 911, 967, 1094
TfiI	GAWTC	1 cut(s)	1100
Tru1I	TTAA	3 cut(s)	555, 621, 714
Tru9I	TTAA	3 cut(s)	555, 621, 714
TscAI	CASTG	3 cut(s)	508, 838, 1056
TseFI	GTSAC	4 cut(s)	593, 679, 702, 803
TseI	GCWGC	1 cut(s)	866
Tsp45I	GTSAC	4 cut(s)	593, 679, 702, 803
TspDTI	ATGAA	1 cut(s)	86
TspRI	CASTG	3 cut(s)	508, 838, 1056
Van91I	CCANNNNNTGG	1 cut(s)	1022
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	4 cut(s)	181, 251, 967, 1094
XceI	RCATGY	1 cut(s)	713
XspI	CTAG	2 cut(s)	336, 447
ZraI	GACGTC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.