Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011109.1

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Forward (+)

12979 .. 13815

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011109.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atggaggaatcaccggtgcaagagacgatggagccagatgaggaagttgaagatagtaacagtaatataaatgccacaacagagggtgtgagtccgagttctttaccggaaggggaaaatttcaaggaattgactgctgatgatgtagtaggaagagagtttccaacagtggaggatgctgaaagatggtataggatgtatgggactgccattggttttggtgtgcgaaagcagagagtgacaagggggattggagggagggttacccggcgaagaatggtctgttgtaaagaaggaaaaagagatgcaaagtggttggagaaagaggaccgtgttcgtaatccaaggaacgagaccagagagaactgcctagcagcatgttgtttccactataacaaggattctggcacatattttgtcactgaattcaagactgaacacagtcatgaattagcaaagccaaaggagattcacttcattcgatcaaatcgatgtgtcagcaacgcagatttggctcatgttaatgcaatgcggagttgttcaataagcacctcccgcgcgtatgactacattgtcaacactagtggtggatttgagtttgttggatatacttccaaggatatgttcaataagatggatgctgaccgaagagcaaagcgtattgatggggatgcacaggctgcaattgcctatatgaatgcgaaggccatagaagatcctgggtttatgtgcaagttcagcgttgatgttgatgggagactagcgaatctgttctggagagactcaacttccttgtatgatcagaaaaaagaaagaaagaaaaaaaccatgaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

278

Amino Acids

31.81

Weight (kDa)

6.96

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	572
AccII	CGCG	2 cut(s)	558, 560
AciI	CCGC	2 cut(s)	532, 556
AclWI	GGATC	1 cut(s)	710
AcsI	RAATTY	2 cut(s)	118, 425
AgeI	ACCGGT	1 cut(s)	13
AgsI	TTSAA	5 cut(s)	50, 124, 430, 543, 628
AhlI	ACTAGT	1 cut(s)	581
AjnI	CCWGG	1 cut(s)	718
AjuI	GAANNNNNNNTTGG	2 cut(s)	608, 640
Alw26I	GTCTC	4 cut(s)	17, 347, 751, 774
AlwI	GGATC	1 cut(s)	710
AoxI	GGCC	1 cut(s)	705
ApeKI	GCWGC	2 cut(s)	374, 680
ApoI	RAATTY	2 cut(s)	118, 425
AsiGI	ACCGGT	1 cut(s)	13
Asp700I	GAANNNNTTC	1 cut(s)	770
AspLEI	GCGC	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	328
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	3
AvaII	GGWCC	1 cut(s)	328
BbvI	GCAGC	2 cut(s)	386, 667
BccI	CCATC	5 cut(s)	22, 180, 628, 659, 746
BciT130I	CCWGG	1 cut(s)	720
BclI	TGATCA	1 cut(s)	799
BcnI	CCSGG	1 cut(s)	268
BcoDI	GTCTC	4 cut(s)	17, 347, 751, 774
BcuI	ACTAGT	1 cut(s)	581
BfaI	CTAG	3 cut(s)	371, 582, 761
BisI	GCNGC	2 cut(s)	375, 681
BlsI	GCNGC	2 cut(s)	376, 682
Bme1390I	CCNGG	2 cut(s)	268, 720
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	2 cut(s)	268, 720
BmsI	GCATC	4 cut(s)	166, 295, 628, 661
BpmI	CTGGAG	1 cut(s)	796
BpuMI	CCSGG	1 cut(s)	268
Bsa29I	ATCGAT	1 cut(s)	490
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	344, 615, 719
BsaWI	WCCGGW	2 cut(s)	13, 106
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bse118I	RCCGGY	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	720
BseCI	ATCGAT	1 cut(s)	490
BseDI	CCNNGG	3 cut(s)	344, 615, 719
BseGI	GGATG	4 cut(s)	181, 201, 643, 676
BseMI	GCAATG	1 cut(s)	534
BseXI	GCAGC	2 cut(s)	386, 667
Bsh1236I	CGCG	2 cut(s)	558, 560
BshFI	GGCC	1 cut(s)	707
BshTI	ACCGGT	1 cut(s)	13
BshVI	ATCGAT	1 cut(s)	490
BsiSI	CCGG	3 cut(s)	14, 107, 268
BslFI	GGGAC	1 cut(s)	217
BsmAI	GTCTC	4 cut(s)	17, 347, 751, 774
BsmBI	CGTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	217
BsmI	GAATGC	1 cut(s)	703
BsnI	GGCC	1 cut(s)	707
Bso31I	GGTCTC	1 cut(s)	347
Bsp143I	GATC	3 cut(s)	482, 715, 799
BspACI	CCGC	2 cut(s)	532, 556
BspANI	GGCC	1 cut(s)	707
BspDI	ATCGAT	1 cut(s)	490
BspFNI	CGCG	2 cut(s)	558, 560
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	710
BspQI	GCTCTTC	1 cut(s)	643
BspTNI	GGTCTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	534
BsrFI	RCCGGY	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	3 cut(s)	344, 615, 719
BssMI	GATC	3 cut(s)	482, 715, 799
BssT1I	CCWWGG	2 cut(s)	344, 615
Bst2UI	CCWGG	1 cut(s)	720
Bst4CI	ACNGT	4 cut(s)	62, 169, 332, 443
Bst6I	CTCTTC	2 cut(s)	148, 643
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstEII	GGTNACC	1 cut(s)	262
BstF5I	GGATG	4 cut(s)	181, 201, 643, 676
BstFNI	CGCG	2 cut(s)	558, 560
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	3 cut(s)	485, 718, 802
BstMAI	GTCTC	4 cut(s)	17, 347, 751, 774
BstMBI	GATC	3 cut(s)	482, 715, 799
BstMWI	GCNNNNNNNGC	5 cut(s)	512, 555, 680, 686, 738
BstNI	CCWGG	1 cut(s)	720
BstNSI	RCATGY	1 cut(s)	381
BstPI	GGTNACC	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	266, 718
BstUI	CGCG	2 cut(s)	558, 560
BstV1I	GCAGC	2 cut(s)	386, 667
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
Bsu15I	ATCGAT	1 cut(s)	490
BsuRI	GGCC	1 cut(s)	707
BsuTUI	ATCGAT	1 cut(s)	490
BtsCI	GGATG	4 cut(s)	181, 201, 643, 676
BtsIMutI	CAGTG	2 cut(s)	174, 420
CciI	TCATGA	1 cut(s)	445
CfoI	GCGC	1 cut(s)	560
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	328
ClaI	ATCGAT	1 cut(s)	490
CspAI	ACCGGT	1 cut(s)	13
CspCI	CAANNNNNGTGG	2 cut(s)	565, 600
CviAII	CATG	4 cut(s)	378, 446, 518, 829
CviJI	RGCY	5 cut(s)	34, 460, 515, 680, 707
CviKI_1	RGCY	5 cut(s)	34, 460, 515, 680, 707
DpnI	GATC	3 cut(s)	484, 717, 801
DpnII	GATC	3 cut(s)	482, 715, 799
DrdI	GACNNNNNNGTC	1 cut(s)	572
DseDI	GACNNNNNNGTC	1 cut(s)	572
Eam1104I	CTCTTC	2 cut(s)	148, 643
EarI	CTCTTC	2 cut(s)	148, 643
Eco130I	CCWWGG	2 cut(s)	344, 615
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	328
Eco91I	GGTNACC	1 cut(s)	262
EcoO65I	GGTNACC	1 cut(s)	262
EcoRI	GAATTC	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	718
EcoT14I	CCWWGG	2 cut(s)	344, 615
ErhI	CCWWGG	2 cut(s)	344, 615
Esp3I	CGTCTC	1 cut(s)	17
FaeI	CATG	4 cut(s)	381, 449, 521, 832
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	4 cut(s)	377, 445, 517, 828
FauI	CCCGC	1 cut(s)	563
FbaI	TGATCA	1 cut(s)	799
Fnu4HI	GCNGC	2 cut(s)	375, 681
FokI	GGATG	4 cut(s)	188, 208, 650, 683
Fsp4HI	GCNGC	2 cut(s)	375, 681
FspBI	CTAG	3 cut(s)	371, 582, 761
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	2 cut(s)	375, 681
GsuI	CTGGAG	1 cut(s)	796
HaeIII	GGCC	1 cut(s)	707
HapII	CCGG	3 cut(s)	14, 107, 268
HhaI	GCGC	1 cut(s)	560
Hin1II	CATG	4 cut(s)	381, 449, 521, 832
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HinfI	GANTC	6 cut(s)	8, 91, 401, 469, 766, 782
HpaII	CCGG	3 cut(s)	14, 107, 268
HphI	GGTGA	1 cut(s)	3
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	2 cut(s)	96, 804
Hpy188III	TCNNGA	3 cut(s)	430, 446, 775
Hpy8I	GTNNAC	1 cut(s)	577
HpyAV	CCTTC	3 cut(s)	104, 287, 697
HpyCH4III	ACNGT	4 cut(s)	62, 169, 332, 443
HpyCH4V	TGCA	6 cut(s)	19, 308, 527, 674, 683, 732
HpyF10VI	GCNNNNNNNGC	5 cut(s)	512, 555, 680, 686, 738
Hsp92II	CATG	4 cut(s)	381, 449, 521, 832
HspAI	GCGC	1 cut(s)	558
Ksp22I	TGATCA	1 cut(s)	799
Kzo9I	GATC	3 cut(s)	482, 715, 799
LguI	GCTCTTC	1 cut(s)	643
LmnI	GCTCC	1 cut(s)	31
Lsp1109I	GCAGC	2 cut(s)	386, 667
LweI	GCATC	4 cut(s)	166, 295, 628, 661
MaeI	CTAG	3 cut(s)	371, 582, 761
MaeIII	GTNAC	4 cut(s)	56, 238, 262, 418
MalI	GATC	3 cut(s)	484, 717, 801
MboI	GATC	3 cut(s)	482, 715, 799
MboII	GAAGA	5 cut(s)	62, 165, 285, 660, 725
MfeI	CAATTG	1 cut(s)	684
MflI	RGATCY	1 cut(s)	715
MluCI	AATT	5 cut(s)	118, 128, 425, 449, 684
MlyI	GAGTC	2 cut(s)	100, 776
MmeI	TCCRAC	3 cut(s)	188, 297, 583
MnlI	CCTC	7 cut(s)	34, 76, 166, 248, 252, 319, 562
MroXI	GAANNNNTTC	1 cut(s)	770
MseI	TTAA	1 cut(s)	522
MslI	CAYNNNNRTG	2 cut(s)	444, 522
MspI	CCGG	3 cut(s)	14, 107, 268
MspR9I	CCNGG	2 cut(s)	268, 720
MunI	CAATTG	1 cut(s)	684
Mva1269I	GAATGC	1 cut(s)	703
MvaI	CCWGG	1 cut(s)	720
MvnI	CGCG	2 cut(s)	558, 560
MwoI	GCNNNNNNNGC	5 cut(s)	512, 555, 680, 686, 738
NciI	CCSGG	1 cut(s)	268
NdeII	GATC	3 cut(s)	482, 715, 799
NlaIII	CATG	4 cut(s)	381, 449, 521, 832
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	2 cut(s)	238, 418
NspI	RCATGY	1 cut(s)	381
PagI	TCATGA	1 cut(s)	445
PciSI	GCTCTTC	1 cut(s)	643
PcsI	WCGNNNNNNNCGW	1 cut(s)	487
PctI	GAATGC	1 cut(s)	703
PdmI	GAANNNNTTC	1 cut(s)	770
PfeI	GAWTC	4 cut(s)	8, 401, 469, 766
PinAI	ACCGGT	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	376, 682
PleI	GAGTC	2 cut(s)	99, 776
PpsI	GAGTC	2 cut(s)	99, 776
Psp6I	CCWGG	1 cut(s)	718
PspEI	GGTNACC	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	718
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	715
RseI	CAYNNNNRTG	2 cut(s)	444, 522
SapI	GCTCTTC	1 cut(s)	643
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	2 cut(s)	375, 681
Sau3AI	GATC	3 cut(s)	482, 715, 799
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	2 cut(s)	100, 776
ScrFI	CCNGG	2 cut(s)	268, 720
SetI	ASST	1 cut(s)	554
SfaNI	GCATC	4 cut(s)	166, 295, 628, 661
SgrAI	CRCCGGYG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	328
SmiMI	CAYNNNNRTG	2 cut(s)	444, 522
SpeI	ACTAGT	1 cut(s)	581
Sse9I	AATT	5 cut(s)	118, 128, 425, 449, 684
SsiI	CCGC	2 cut(s)	532, 556
SspMI	CTAG	3 cut(s)	371, 582, 761
StyD4I	CCNGG	2 cut(s)	266, 718
StyI	CCWWGG	2 cut(s)	344, 615
TaaI	ACNGT	4 cut(s)	62, 169, 332, 443
TaqI	TCGA	2 cut(s)	481, 490
TaqII	GACCGA	1 cut(s)	660
TasI	AATT	5 cut(s)	118, 128, 425, 449, 684
TfiI	GAWTC	4 cut(s)	8, 401, 469, 766
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	2 cut(s)	174, 427
TseFI	GTSAC	2 cut(s)	238, 418
TseI	GCWGC	2 cut(s)	374, 680
Tsp45I	GTSAC	2 cut(s)	238, 418
TspDTI	ATGAA	3 cut(s)	462, 466, 710
TspRI	CASTG	2 cut(s)	174, 427
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	2 cut(s)	118, 425
XceI	RCATGY	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	770
XspI	CTAG	3 cut(s)	371, 582, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.