Rh2DG301400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001462
Physical Location & Seq
Forward (+)
35836339 .. 35940515
104177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG301400.1

Sequence Viewer

Length: 990 bp
ATGAACTTTGAGCATCCCAGTTCGAGTGATTGCCGATACACAGAGGTCCAATCTGCTGATCACGACTCATCTGAACCACCACAGGAAGAGAGGGTCAGTTATGGGGATGAGAATTTTACTGCCAAAAGCCGTGTTGGGAAAAGTTTTGCTGAATTGACTGCGGAGGATGTAGAAGGAAGAGAATTCGCCACTTTGGATGATGCCGAAAATTGGTATAGAATGTATGCAACTGCACTTGGTTTTATGACAAGATTGCAGAGGGTTACTAGAGGGATTGGAGGCAGGATAACGAGGCGAAGATTGGTTTGTAATAAAGAAGGTAAAAGAGAAGCAAAGTGGCTGCAAAAAGAGGACCGTGTTCGTAATGCTAAGCAAGAGACCCGATGCAACTGCCTAGCAGCATGCTGTATCCATTTCAATAAGAATAGTCAAACATACATCATCACTGAATTCAAAACCGAACACAATCACGATCTTGCCATGCATTCCAATGGTTCGGTTACTCATGCAGACATGGGACATCTTGGTGCAAGGCGCACTTGTTCAGTCAGCACCTCTAGGGCAGATGACTACACGGTGAAATGCAATGGGGGGTTTGAGTTTGTGGGAGACACTGAGAAGGATCTTTTCAACAAGATAGAGGCAGAGCCAAGGGCCAAATTGTTTAAGCAGGGGGAAGAAACTGCACAAATAGTGGAGGTGAGTGACATTACAATGCCACCTTGGAGCATTAACCTAGTAGGGTTCGGCGATGAGTATAGATGCGATCACGTTGACATACCACGGGGAGTGACTTATAGCTATGTCTCATTGTCACCACATGTTAAAGCGGTTAGTGCCGACACAGCGTCAACATTACTTCAGCAGATTGCTGGTCTGACATCAATAGCAACAGAGCAGTCGCTAAAGGCGCGTGACGAGATTTTGCGCCTGAAGAGGGACAGTGTGAGGGTTCCGTCTCAAACAGGAGATGAAAATACGTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

329

Amino Acids

37.07

Weight (kDa)

5.76

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 71 - 160 6.1e-17 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 913
AciI CCGC 2 cut(s) 161, 830
AclWI GGATC 1 cut(s) 630
AcsI RAATTY 3 cut(s) 112, 182, 449
AcuI CTGAAG 2 cut(s) 845, 953
AfiI CCNNNNNNNGG 2 cut(s) 210, 937
AflIII ACRYGT 1 cut(s) 820
AgsI TTSAA 3 cut(s) 418, 454, 631
AhdI GACNNNNNGTC 1 cut(s) 847
AluBI AGCT 1 cut(s) 801
AluI AGCT 1 cut(s) 801
Alw26I GTCTC 4 cut(s) 371, 603, 811, 963
AlwI GGATC 1 cut(s) 630
AoxI GGCC 1 cut(s) 654
ApeKI GCWGC 2 cut(s) 340, 398
ApoI RAATTY 3 cut(s) 112, 182, 449
AspLEI GCGC 3 cut(s) 537, 913, 930
AspS9I GGNCC 3 cut(s) 46, 352, 654
AsuHPI GGTGA 3 cut(s) 589, 712, 807
AvaII GGWCC 2 cut(s) 46, 352
BbvI GCAGC 2 cut(s) 327, 410
BceAI ACGGC 1 cut(s) 114
BcgI CGANNNNNNTGC 2 cut(s) 372, 406
BciVI GTATCC 1 cut(s) 419
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 4 cut(s) 371, 603, 811, 963
BfaI CTAG 4 cut(s) 267, 395, 558, 737
BfuI GTATCC 1 cut(s) 419
BisI GCNGC 2 cut(s) 341, 399
BlpI GCTNAGC 1 cut(s) 369
BlsI GCNGC 2 cut(s) 342, 400
Bme18I GGWCC 2 cut(s) 46, 352
BmeRI GACNNNNNGTC 1 cut(s) 847
BmgT120I GGNCC 3 cut(s) 46, 352, 654
BmiI GGNNCC 1 cut(s) 954
BmrI ACTGGG 1 cut(s) 12
BmsI GCATC 4 cut(s) 22, 190, 374, 752
BmuI ACTGGG 1 cut(s) 12
Bpu1102I GCTNAGC 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 3 cut(s) 650, 722, 782
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 937
Bse1I ACTGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 592
BseDI CCNNGG 3 cut(s) 650, 722, 782
BseGI GGATG 4 cut(s) 13, 112, 172, 202
BseLI CCNNNNNNNGG 2 cut(s) 210, 937
BseMI GCAATG 1 cut(s) 592
BseMII CTCAG 1 cut(s) 606
BseNI ACTGG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 327, 410
BsgI GTGCAG 2 cut(s) 216, 669
Bsh1236I CGCG 1 cut(s) 913
BshFI GGCC 1 cut(s) 656
BslFI GGGAC 2 cut(s) 531, 953
BslI CCNNNNNNNGG 2 cut(s) 210, 937
BsmAI GTCTC 4 cut(s) 371, 603, 811, 963
BsmBI CGTCTC 1 cut(s) 963
BsmFI GGGAC 2 cut(s) 531, 953
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 1 cut(s) 656
Bso31I GGTCTC 1 cut(s) 371
Bsp143I GATC 4 cut(s) 58, 472, 622, 766
Bsp1720I GCTNAGC 1 cut(s) 369
BspACI CCGC 2 cut(s) 161, 830
BspANI GGCC 1 cut(s) 656
BspCNI CTCAG 1 cut(s) 607
BspFNI CGCG 1 cut(s) 913
BspLI GGNNCC 1 cut(s) 954
BspPI GGATC 1 cut(s) 630
BspTNI GGTCTC 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 592
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 3 cut(s) 650, 722, 782
BssMI GATC 4 cut(s) 58, 472, 622, 766
BssT1I CCWWGG 2 cut(s) 650, 722
Bst4CI ACNGT 3 cut(s) 356, 577, 944
Bst6I CTCTTC 3 cut(s) 81, 172, 929
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 2 cut(s) 369, 615
BstDSI CCRYGG 1 cut(s) 782
BstF5I GGATG 4 cut(s) 13, 112, 172, 202
BstFNI CGCG 1 cut(s) 913
BstHHI GCGC 3 cut(s) 537, 913, 930
BstKTI GATC 4 cut(s) 61, 475, 625, 769
BstMAI GTCTC 4 cut(s) 371, 603, 811, 963
BstMBI GATC 4 cut(s) 58, 472, 622, 766
BstMWI GCNNNNNNNGC 3 cut(s) 836, 845, 910
BstNSI RCATGY 2 cut(s) 405, 824
BstUI CGCG 1 cut(s) 913
BstV1I GCAGC 2 cut(s) 327, 410
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 1 cut(s) 656
BtgI CCRYGG 1 cut(s) 782
BtgZI GCGATG 1 cut(s) 765
BtsCI GGATG 4 cut(s) 13, 112, 172, 202
BtsIMutI CAGTG 3 cut(s) 444, 612, 949
Cac8I GCNNGC 1 cut(s) 403
CfoI GCGC 3 cut(s) 537, 913, 930
Cfr13I GGNCC 3 cut(s) 46, 352, 654
CseI GACGC 1 cut(s) 837
CviAII CATG 5 cut(s) 402, 481, 506, 514, 821
CviJI RGCY 5 cut(s) 129, 340, 649, 656, 801
CviKI_1 RGCY 5 cut(s) 129, 340, 649, 656, 801
DdeI CTNAG 2 cut(s) 369, 615
DpnI GATC 4 cut(s) 60, 474, 624, 768
DpnII GATC 4 cut(s) 58, 472, 622, 766
DriI GACNNNNNGTC 1 cut(s) 847
Eam1104I CTCTTC 3 cut(s) 81, 172, 929
Eam1105I GACNNNNNGTC 1 cut(s) 847
EarI CTCTTC 3 cut(s) 81, 172, 929
Eco130I CCWWGG 2 cut(s) 650, 722
Eco31I GGTCTC 1 cut(s) 371
Eco47I GGWCC 2 cut(s) 46, 352
Eco57I CTGAAG 2 cut(s) 845, 953
EcoRI GAATTC 2 cut(s) 182, 449
EcoT14I CCWWGG 2 cut(s) 650, 722
EcoT22I ATGCAT 1 cut(s) 486
ErhI CCWWGG 2 cut(s) 650, 722
Esp3I CGTCTC 1 cut(s) 963
FaeI CATG 5 cut(s) 405, 484, 509, 517, 824
FalI AAGNNNNNCTT 2 cut(s) 523, 555
FaqI GGGAC 2 cut(s) 531, 953
FatI CATG 5 cut(s) 401, 480, 505, 513, 820
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 2 cut(s) 341, 399
FokI GGATG 3 cut(s) 119, 179, 209
Fsp4HI GCNGC 2 cut(s) 341, 399
FspBI CTAG 4 cut(s) 267, 395, 558, 737
GlaI GCGC 3 cut(s) 536, 912, 929
GluI GCNGC 2 cut(s) 341, 399
HaeIII GGCC 1 cut(s) 656
HgaI GACGC 1 cut(s) 837
HhaI GCGC 3 cut(s) 537, 913, 930
Hin1II CATG 5 cut(s) 405, 484, 509, 517, 824
Hin6I GCGC 3 cut(s) 535, 911, 928
HinP1I GCGC 3 cut(s) 535, 911, 928
HincII GTYRAC 2 cut(s) 775, 852
HindII GTYRAC 2 cut(s) 775, 852
HinfI GANTC 1 cut(s) 65
HphI GGTGA 3 cut(s) 589, 712, 807
Hpy166II GTNNAC 2 cut(s) 775, 852
Hpy188I TCNGA 2 cut(s) 73, 879
Hpy188III TCNNGA 2 cut(s) 62, 470
Hpy8I GTNNAC 2 cut(s) 775, 852
HpyAV CCTTC 3 cut(s) 167, 311, 613
HpyCH4III ACNGT 3 cut(s) 356, 577, 944
HpyCH4IV ACGT 2 cut(s) 771, 980
HpyF10VI GCNNNNNNNGC 3 cut(s) 836, 845, 910
HpyF3I CTNAG 2 cut(s) 369, 615
HpySE526I ACGT 2 cut(s) 771, 980
Hsp92II CATG 5 cut(s) 405, 484, 509, 517, 824
HspAI GCGC 3 cut(s) 535, 911, 928
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 4 cut(s) 58, 472, 622, 766
LmnI GCTCC 1 cut(s) 726
LpnPI CCDG 7 cut(s) 31, 68, 268, 656, 858, 944, 951
Lsp1109I GCAGC 2 cut(s) 327, 410
LweI GCATC 4 cut(s) 22, 190, 374, 752
MaeI CTAG 4 cut(s) 267, 395, 558, 737
MaeII ACGT 2 cut(s) 771, 980
MaeIII GTNAC 6 cut(s) 262, 499, 704, 790, 813, 914
MalI GATC 4 cut(s) 60, 474, 624, 768
MboI GATC 4 cut(s) 58, 472, 622, 766
MboII GAAGA 5 cut(s) 98, 189, 309, 689, 946
MflI RGATCY 1 cut(s) 622
MluCI AATT 6 cut(s) 112, 152, 182, 208, 449, 659
MlyI GAGTC 1 cut(s) 59
Mph1103I ATGCAT 1 cut(s) 486
MseI TTAA 3 cut(s) 666, 732, 825
MslI CAYNNNNRTG 3 cut(s) 489, 525, 713
Mva1269I GAATGC 1 cut(s) 484
MvnI CGCG 1 cut(s) 913
MwoI GCNNNNNNNGC 3 cut(s) 836, 845, 910
NdeII GATC 4 cut(s) 58, 472, 622, 766
NlaIII CATG 5 cut(s) 405, 484, 509, 517, 824
NlaIV GGNNCC 1 cut(s) 954
NmuCI GTSAC 4 cut(s) 704, 790, 813, 914
NsiI ATGCAT 1 cut(s) 486
NspI RCATGY 2 cut(s) 405, 824
PaeI GCATGC 1 cut(s) 405
PciI ACATGT 1 cut(s) 820
PctI GAATGC 1 cut(s) 484
PkrI GCNGC 2 cut(s) 342, 400
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PscI ACATGT 1 cut(s) 820
PspN4I GGNNCC 1 cut(s) 954
PspPI GGNCC 3 cut(s) 46, 352, 654
PsuI RGATCY 1 cut(s) 622
RseI CAYNNNNRTG 3 cut(s) 489, 525, 713
SaqAI TTAA 3 cut(s) 666, 732, 825
SatI GCNGC 2 cut(s) 341, 399
Sau3AI GATC 4 cut(s) 58, 472, 622, 766
Sau96I GGNCC 3 cut(s) 46, 352, 654
SchI GAGTC 1 cut(s) 59
SetI ASST 9 cut(s) 48, 322, 557, 702, 724, 738, 774, 803, 983
SfaNI GCATC 4 cut(s) 22, 190, 374, 752
SinI GGWCC 2 cut(s) 46, 352
SmiMI CAYNNNNRTG 3 cut(s) 489, 525, 713
SphI GCATGC 1 cut(s) 405
Sse9I AATT 6 cut(s) 112, 152, 182, 208, 449, 659
SsiI CCGC 2 cut(s) 161, 830
SspMI CTAG 4 cut(s) 267, 395, 558, 737
StyI CCWWGG 2 cut(s) 650, 722
TaaI ACNGT 3 cut(s) 356, 577, 944
TaiI ACGT 2 cut(s) 774, 983
TaqI TCGA 1 cut(s) 23
TasI AATT 6 cut(s) 112, 152, 182, 208, 449, 659
Tru1I TTAA 3 cut(s) 666, 732, 825
Tru9I TTAA 3 cut(s) 666, 732, 825
TscAI CASTG 3 cut(s) 451, 619, 949
TseFI GTSAC 4 cut(s) 704, 790, 813, 914
TseI GCWGC 2 cut(s) 340, 398
Tsp45I GTSAC 4 cut(s) 704, 790, 813, 914
TspDTI ATGAA 2 cut(s) 17, 987
TspGWI ACGGA 1 cut(s) 945
TspRI CASTG 3 cut(s) 451, 619, 949
VpaK11BI GGWCC 2 cut(s) 46, 352
XapI RAATTY 3 cut(s) 112, 182, 449
XceI RCATGY 2 cut(s) 405, 824
XspI CTAG 4 cut(s) 267, 395, 558, 737
Zsp2I ATGCAT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.