Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Forward (+)

9819540 .. 9821037

Gene Structure 1498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08902.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTTGCGAAGAATTGTGGGTGTTGCAATTGCCAGTGATGAGTTCTTGATCAACAAAGTACAACCAGCGATGGATGCGTCTGAGAATGAAAAACAACCGAATAAGGGTGTAGATGATGTGGCAGTAGATGTTCCCGGATTTGGAAGCCTGACGATCGCCGATGTGCGAGCTTTGACCTTCGAAACAGTGGATGAGGCAGAGAGATTCTACTGTGCATATTCAGCAGCAGTTGGATTTGGATGTAGGAAGGATGACAAGGGAGAGTCTAACGGTTTGATTCGGTGGAGGCAGTGGGTTTGCTGCAAGGAAGAGACTCGAGATAAAAAGTACTTGGAAGCAGATGGTTTGAGCCGTACTCCTCGGAAACAGACTAGGAGCATAATCATGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

131

Amino Acids

14.58

Weight (kDa)

5.57

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	60, 329, 355
AfiI	CCNNNNNNNGG	2 cut(s)	104, 140
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw26I	GTCTC	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	315
ApeKI	GCWGC	2 cut(s)	224, 300
AsuC2I	CCSGG	1 cut(s)	135
AsuII	TTCGAA	1 cut(s)	180
AvaI	CYCGRG	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	236, 287
BccI	CCATC	2 cut(s)	64, 335
BceAI	ACGGC	1 cut(s)	336
BclI	TGATCA	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	2 cut(s)	372, 391
BisI	GCNGC	2 cut(s)	225, 301
BlsI	GCNGC	2 cut(s)	226, 302
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	1 cut(s)	135
BmeT110I	CYCGRG	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	64
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
Bpu14I	TTCGAA	1 cut(s)	180
BpuMI	CCSGG	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 140
Bse1I	ACTGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	359
BseGI	GGATG	4 cut(s)	79, 196, 245, 256
BseLI	CCNNNNNNNGG	2 cut(s)	104, 140
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	2 cut(s)	236, 287
Bsh1285I	CGRYCG	1 cut(s)	156
BsiEI	CGRYCG	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	104, 140
BsmAI	GTCTC	1 cut(s)	305
BsoBI	CYCGRG	1 cut(s)	315
Bsp119I	TTCGAA	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	48, 153
BspCNI	CTCAG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	384
BspT104I	TTCGAA	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	2 cut(s)	48, 153
Bst4CI	ACNGT	3 cut(s)	187, 212, 272
Bst6I	CTCTTC	1 cut(s)	303
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	4 cut(s)	79, 196, 245, 256
BstKTI	GATC	2 cut(s)	51, 156
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	2 cut(s)	48, 153
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 221
BstSCI	CCNGG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	236, 287
BtgZI	GCGATG	1 cut(s)	83
BtsCI	GGATG	4 cut(s)	79, 196, 245, 256
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	3 cut(s)	40, 192, 296
Cac8I	GCNNGC	1 cut(s)	168
CciI	TCATGA	1 cut(s)	384
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	3 cut(s)	59, 328, 354
CviAII	CATG	1 cut(s)	385
CviJI	RGCY	3 cut(s)	147, 170, 351
CviKI_1	RGCY	3 cut(s)	147, 170, 351
CviQI	GTAC	3 cut(s)	59, 328, 354
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	2 cut(s)	50, 155
DpnII	GATC	2 cut(s)	48, 153
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	315
FaeI	CATG	1 cut(s)	388
FaiI	YATR	3 cut(s)	217, 380, 386
FatI	CATG	1 cut(s)	384
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	225, 301
FokI	GGATG	4 cut(s)	86, 203, 252, 263
Fsp4HI	GCNGC	2 cut(s)	225, 301
FspBI	CTAG	2 cut(s)	372, 391
GluI	GCNGC	2 cut(s)	225, 301
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	388
HinfI	GANTC	4 cut(s)	204, 263, 277, 313
HpaII	CCGG	1 cut(s)	135
Hpy188I	TCNGA	2 cut(s)	82, 363
Hpy188III	TCNNGA	3 cut(s)	46, 317, 385
HpyAV	CCTTC	2 cut(s)	187, 241
HpyCH4III	ACNGT	3 cut(s)	187, 212, 272
HpyCH4V	TGCA	3 cut(s)	26, 215, 303
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 221
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	2 cut(s)	48, 153
LmnI	GCTCC	1 cut(s)	375
LpnPI	CCDG	4 cut(s)	46, 78, 148, 161
Lsp1109I	GCAGC	2 cut(s)	236, 287
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	2 cut(s)	372, 391
MalI	GATC	2 cut(s)	50, 155
MboI	GATC	2 cut(s)	48, 153
MboII	GAAGA	2 cut(s)	21, 320
MfeI	CAATTG	1 cut(s)	27
MluCI	AATT	2 cut(s)	12, 27
MlyI	GAGTC	2 cut(s)	272, 307
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	3 cut(s)	187, 279, 369
MslI	CAYNNNNRTG	1 cut(s)	383
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	135
MunI	CAATTG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	74, 221
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	48, 153
NlaIII	CATG	1 cut(s)	388
NspV	TTCGAA	1 cut(s)	180
PaeR7I	CTCGAG	1 cut(s)	315
PagI	TCATGA	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	204, 277
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	226, 302
Ple19I	CGATCG	1 cut(s)	156
PleI	GAGTC	2 cut(s)	271, 307
PpsI	GAGTC	2 cut(s)	271, 307
PvuI	CGATCG	1 cut(s)	156
RsaI	GTAC	3 cut(s)	60, 329, 355
RsaNI	GTAC	3 cut(s)	59, 328, 354
RseI	CAYNNNNRTG	1 cut(s)	383
SatI	GCNGC	2 cut(s)	225, 301
Sau3AI	GATC	2 cut(s)	48, 153
ScaI	AGTACT	1 cut(s)	329
SchI	GAGTC	2 cut(s)	272, 307
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	2 cut(s)	172, 179
SfaNI	GCATC	1 cut(s)	64
Sfr274I	CTCGAG	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	180
SlaI	CTCGAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
Sse9I	AATT	2 cut(s)	12, 27
SspMI	CTAG	2 cut(s)	372, 391
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	3 cut(s)	187, 212, 272
TaqI	TCGA	2 cut(s)	180, 316
TasI	AATT	2 cut(s)	12, 27
TatI	WGTACW	2 cut(s)	58, 327
TfiI	GAWTC	2 cut(s)	204, 277
TscAI	CASTG	3 cut(s)	40, 192, 296
TseI	GCWGC	2 cut(s)	224, 300
TspDTI	ATGAA	1 cut(s)	102
TspRI	CASTG	3 cut(s)	40, 192, 296
XhoI	CTCGAG	1 cut(s)	315
XspI	CTAG	2 cut(s)	372, 391
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.