Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Reverse (-)

20944546 .. 20945745

Gene Structure 1200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29993.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGATGCATCTGGGAATGAAGAACAGCCAACCATGGATACATCGGAGAATGAAGAACAACCTTCTTCGGGTTTTGAGGATGTAAAGGTACACGTCCCAAGACATGGAAACTTTTCTGTTTCTGATATTGAAGCCATGACATTCAATACAGTTGATGAGGCAGAAAGTTTCTATGCTGCCTATTCTGTGGCAGTTGGGTTTGGTATAAGGAAGGGTGACAAGGCTGAGTCTAATGGTTTGATTCGGAGGAGGGAGTGGGTCTGCAACAAGGAAGGAACCCGAAAAGCAAACAATGAGGCAACCAAAGTTTATGTGGTGAAGGCATTCATTCCTCAACATAACCACATGCTGACAACTAGCAACCAAATCCCCTTCATTCGTACTAATCGACATGTTGGCGAGGAATTTTTGGCTCTAAAAAATACGATGACAAGGGTGTCAATTAGACCTTGTCACGCCTATGAGTATATGGTCGAACAGAGCGGGGGATATAGGAGAGTGGGATTTACCGTGAAGGACCTCTACAACAAGATTGACCAGCAACGAAGGACCGCCCCATTTGAGAGTGATTCTAAAGGCGCACTTTCGTATATGAATGCACTGGCAGCAAAAGACTCTCACTTCTTCTACCGATTCACGGCAGATTTAGAAGATAGGATGGTGGACATGTTTTGGCGAGATGTGCATTCATTTGTTGACTATTATGGGGATGTGTTGATATTCGACAGCACTTACAAAACCAATGTCTACAACATGTCATTGGTTTTGTTTGTTGGGACGAATAATCATCGGGGTAGTATTGTGTTCGGTGCTGCTCTTCTTTCAGATGAGACTGTGGAGACTTACACTTGGTTGCTTAGAAAATTCCTGGATTTGATGAACGGGAAAATGCAAAAGGCTGTAATCACAGACGGAGACGAGGCCATGCGTACTGCAATTCAAACCATGATGTTGGAAGCAAGGCATCGTCTCTGTATTTGGCACATAGGTCAAAATGCTAATGGCCACTTAAAATTAACGAAAAAGTTGAAGGCTTTCAACAGGTGCATTAGGAAGTATCAAATGGTTGAGCAATTTGATAGGTTGTGGCAGGATATATATGCTAGACGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

372

Amino Acids

42.89

Weight (kDa)

7.72

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	56 - 100	1.1e-06	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	228 - 320	2.7e-07	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	238 - 332	6.8e-26	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	436
AccB7I	CCANNNNNTGG	1 cut(s)	104
AccBSI	CCGCTC	1 cut(s)	483
AccI	GTMKAC	1 cut(s)	747
AciI	CCGC	2 cut(s)	483, 552
AcoI	YGGCCR	1 cut(s)	1003
AcsI	RAATTY	3 cut(s)	404, 863, 1110
AfaI	GTAC	3 cut(s)	90, 382, 931
AfiI	CCNNNNNNNGG	3 cut(s)	68, 104, 637
AflIII	ACRYGT	4 cut(s)	91, 391, 666, 753
AgsI	TTSAA	5 cut(s)	131, 145, 941, 1030, 1039
AjiI	CACGTC	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	867
Alw26I	GTCTC	4 cut(s)	824, 833, 909, 974
AoxI	GGCC	2 cut(s)	921, 1003
ApeKI	GCWGC	3 cut(s)	176, 605, 812
ApoI	RAATTY	3 cut(s)	404, 863, 1110
ArsI	GACNNNNNNTTYG	2 cut(s)	729, 761
Asp700I	GAANNNNTTC	3 cut(s)	112, 323, 1034
AspLEI	GCGC	1 cut(s)	581
AspS9I	GGNCC	2 cut(s)	517, 549
AsuHPI	GGTGA	2 cut(s)	227, 328
AvaII	GGWCC	2 cut(s)	517, 549
BalI	TGGCCA	1 cut(s)	1005
BarI	GAAGNNNNNNTAC	2 cut(s)	506, 538
BbvI	GCAGC	3 cut(s)	163, 617, 799
BccI	CCATC	1 cut(s)	652
BceAI	ACGGC	1 cut(s)	654
BciT130I	CCWGG	1 cut(s)	869
BciVI	GTATCC	1 cut(s)	31
BcoDI	GTCTC	4 cut(s)	824, 833, 909, 974
BfaI	CTAG	2 cut(s)	357, 1104
BfuI	GTATCC	1 cut(s)	31
BisI	GCNGC	3 cut(s)	177, 606, 813
BlsI	GCNGC	3 cut(s)	178, 607, 814
Bme1390I	CCNGG	1 cut(s)	869
Bme18I	GGWCC	2 cut(s)	517, 549
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	517, 549
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	869
BmsI	GCATC	2 cut(s)	17, 973
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 104, 637
Bse1I	ACTGG	1 cut(s)	606
BseBI	CCWGG	1 cut(s)	869
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	4 cut(s)	10, 85, 663, 715
BseLI	CCNNNNNNNGG	3 cut(s)	68, 104, 637
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	606
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	3 cut(s)	163, 617, 799
BshFI	GGCC	2 cut(s)	923, 1005
BslFI	GGGAC	2 cut(s)	80, 790
BslI	CCNNNNNNNGG	3 cut(s)	68, 104, 637
BsmAI	GTCTC	4 cut(s)	824, 833, 909, 974
BsmBI	CGTCTC	2 cut(s)	909, 974
BsmFI	GGGAC	2 cut(s)	80, 790
BsmI	GAATGC	3 cut(s)	323, 601, 685
BsnI	GGCC	2 cut(s)	923, 1005
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	2 cut(s)	483, 552
BspANI	GGCC	2 cut(s)	923, 1005
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	277
BspQI	GCTCTTC	1 cut(s)	822
BsrBI	CCGCTC	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	606
BssECI	CCNNGG	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	869
Bst4CI	ACNGT	3 cut(s)	151, 511, 835
Bst6I	CTCTTC	1 cut(s)	822
BstDEI	CTNAG	2 cut(s)	225, 857
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	4 cut(s)	10, 85, 663, 715
BstHHI	GCGC	1 cut(s)	581
BstMAI	GTCTC	4 cut(s)	824, 833, 909, 974
BstMWI	GCNNNNNNNGC	2 cut(s)	605, 682
BstNI	CCWGG	1 cut(s)	869
BstNSI	RCATGY	4 cut(s)	349, 395, 670, 757
BstSCI	CCNGG	1 cut(s)	867
BstV1I	GCAGC	3 cut(s)	163, 617, 799
BstXI	CCANNNNNNTGG	1 cut(s)	952
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	923, 1005
BtgI	CCRYGG	1 cut(s)	33
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	4 cut(s)	10, 85, 663, 715
BtsIMutI	CAGTG	1 cut(s)	599
CfoI	GCGC	1 cut(s)	581
Cfr13I	GGNCC	2 cut(s)	517, 549
Csp6I	GTAC	3 cut(s)	89, 381, 930
CviAII	CATG	9 cut(s)	34, 104, 136, 346, 392, 667, 754, 925, 946
CviJI	RGCY	8 cut(s)	28, 134, 224, 413, 899, 923, 1005, 1034
CviKI_1	RGCY	8 cut(s)	28, 134, 224, 413, 899, 923, 1005, 1034
CviQI	GTAC	3 cut(s)	89, 381, 930
DdeI	CTNAG	2 cut(s)	225, 857
DrdI	GACNNNNNNGTC	1 cut(s)	436
DseDI	GACNNNNNNGTC	1 cut(s)	436
EaeI	YGGCCR	1 cut(s)	1003
Eam1104I	CTCTTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	822
Eco130I	CCWWGG	1 cut(s)	33
Eco47I	GGWCC	2 cut(s)	517, 549
EcoO109I	RGGNCCY	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	867
EcoT14I	CCWWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	33
Esp3I	CGTCTC	2 cut(s)	909, 974
FaeI	CATG	9 cut(s)	37, 107, 139, 349, 395, 670, 757, 928, 949
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FaqI	GGGAC	2 cut(s)	80, 790
FatI	CATG	9 cut(s)	33, 103, 135, 345, 391, 666, 753, 924, 945
FauI	CCCGC	1 cut(s)	476
FblI	GTMKAC	1 cut(s)	747
Fnu4HI	GCNGC	3 cut(s)	177, 606, 813
FokI	GGATG	4 cut(s)	17, 92, 670, 722
Fsp4HI	GCNGC	3 cut(s)	177, 606, 813
FspBI	CTAG	2 cut(s)	357, 1104
GlaI	GCGC	1 cut(s)	580
GluI	GCNGC	3 cut(s)	177, 606, 813
HaeIII	GGCC	2 cut(s)	923, 1005
HhaI	GCGC	1 cut(s)	581
Hin1II	CATG	9 cut(s)	37, 107, 139, 349, 395, 670, 757, 928, 949
Hin6I	GCGC	1 cut(s)	579
HinP1I	GCGC	1 cut(s)	579
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HinfI	GANTC	5 cut(s)	227, 241, 569, 614, 633
HphI	GGTGA	2 cut(s)	227, 328
Hpy166II	GTNNAC	4 cut(s)	91, 664, 697, 748
Hpy188I	TCNGA	4 cut(s)	46, 124, 246, 826
Hpy8I	GTNNAC	4 cut(s)	91, 664, 697, 748
HpyAV	CCTTC	8 cut(s)	72, 205, 266, 313, 382, 508, 540, 1024
HpyCH4III	ACNGT	3 cut(s)	151, 511, 835
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	7 cut(s)	8, 264, 599, 685, 892, 935, 1047
HpyF10VI	GCNNNNNNNGC	2 cut(s)	605, 682
HpyF3I	CTNAG	2 cut(s)	225, 857
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	9 cut(s)	37, 107, 139, 349, 395, 670, 757, 928, 949
HspAI	GCGC	1 cut(s)	579
LguI	GCTCTTC	1 cut(s)	822
LpnPI	CCDG	6 cut(s)	551, 587, 854, 881, 1027, 1076
Lsp1109I	GCAGC	3 cut(s)	163, 617, 799
LweI	GCATC	2 cut(s)	17, 973
MaeI	CTAG	2 cut(s)	357, 1104
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	215, 452
MbiI	CCGCTC	1 cut(s)	483
MboII	GAAGA	6 cut(s)	32, 57, 65, 616, 662, 809
MlsI	TGGCCA	1 cut(s)	1005
MluCI	AATT	7 cut(s)	404, 441, 863, 936, 1013, 1073, 1110
MluNI	TGGCCA	1 cut(s)	1005
MlyI	GAGTC	2 cut(s)	236, 608
MmeI	TCCRAC	1 cut(s)	933
MnlI	CCTC	9 cut(s)	70, 151, 240, 243, 289, 342, 394, 530, 913
Mox20I	TGGCCA	1 cut(s)	1005
Mph1103I	ATGCAT	1 cut(s)	10
MroXI	GAANNNNTTC	3 cut(s)	112, 323, 1034
MscI	TGGCCA	1 cut(s)	1005
MseI	TTAA	2 cut(s)	1010, 1016
MslI	CAYNNNNRTG	1 cut(s)	459
Msp20I	TGGCCA	1 cut(s)	1005
MspR9I	CCNGG	1 cut(s)	869
Mva1269I	GAATGC	3 cut(s)	323, 601, 685
MvaI	CCWGG	1 cut(s)	869
MwoI	GCNNNNNNNGC	2 cut(s)	605, 682
NcoI	CCATGG	1 cut(s)	33
NlaIII	CATG	9 cut(s)	37, 107, 139, 349, 395, 670, 757, 928, 949
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	215, 452
NsiI	ATGCAT	1 cut(s)	10
NspI	RCATGY	4 cut(s)	349, 395, 670, 757
PciI	ACATGT	3 cut(s)	391, 666, 753
PciSI	GCTCTTC	1 cut(s)	822
PcsI	WCGNNNNNNNCGW	1 cut(s)	385
PctI	GAATGC	3 cut(s)	323, 601, 685
PdmI	GAANNNNTTC	3 cut(s)	112, 323, 1034
PfeI	GAWTC	3 cut(s)	241, 569, 633
PflFI	GACNNNGTC	1 cut(s)	450
PflMI	CCANNNNNTGG	1 cut(s)	104
PfoI	TCCNGGA	1 cut(s)	867
PkrI	GCNGC	3 cut(s)	178, 607, 814
PleI	GAGTC	2 cut(s)	235, 608
PpsI	GAGTC	2 cut(s)	235, 608
PpuMI	RGGWCCY	1 cut(s)	517
PscI	ACATGT	3 cut(s)	391, 666, 753
Psp5II	RGGWCCY	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	867
PspGI	CCWGG	1 cut(s)	867
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	517, 549
PspPPI	RGGWCCY	1 cut(s)	517
PsyI	GACNNNGTC	1 cut(s)	450
RsaI	GTAC	3 cut(s)	90, 382, 931
RsaNI	GTAC	3 cut(s)	89, 381, 930
RseI	CAYNNNNRTG	1 cut(s)	459
SapI	GCTCTTC	1 cut(s)	822
SaqAI	TTAA	2 cut(s)	1010, 1016
SatI	GCNGC	3 cut(s)	177, 606, 813
Sau96I	GGNCC	2 cut(s)	517, 549
SchI	GAGTC	2 cut(s)	236, 608
ScrFI	CCNGG	1 cut(s)	869
SetI	ASST	8 cut(s)	64, 90, 96, 451, 522, 991, 1046, 1085
SfaNI	GCATC	2 cut(s)	17, 973
SinI	GGWCC	2 cut(s)	517, 549
SmiMI	CAYNNNNRTG	1 cut(s)	459
Sse9I	AATT	7 cut(s)	404, 441, 863, 936, 1013, 1073, 1110
SsiI	CCGC	2 cut(s)	483, 552
SspMI	CTAG	2 cut(s)	357, 1104
StyD4I	CCNGG	1 cut(s)	867
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	3 cut(s)	151, 511, 835
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	388, 474, 723
TasI	AATT	7 cut(s)	404, 441, 863, 936, 1013, 1073, 1110
TfiI	GAWTC	3 cut(s)	241, 569, 633
Tru1I	TTAA	2 cut(s)	1010, 1016
Tru9I	TTAA	2 cut(s)	1010, 1016
TscAI	CASTG	1 cut(s)	606
TseFI	GTSAC	2 cut(s)	215, 452
TseI	GCWGC	3 cut(s)	176, 605, 812
Tsp45I	GTSAC	2 cut(s)	215, 452
TspDTI	ATGAA	7 cut(s)	33, 66, 316, 364, 608, 678, 893
TspGWI	ACGGA	1 cut(s)	927
TspRI	CASTG	1 cut(s)	606
Tth111I	GACNNNGTC	1 cut(s)	450
Van91I	CCANNNNNTGG	1 cut(s)	104
VpaK11BI	GGWCC	2 cut(s)	517, 549
XapI	RAATTY	3 cut(s)	404, 863, 1110
XceI	RCATGY	4 cut(s)	349, 395, 670, 757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	747
XmnI	GAANNNNTTC	3 cut(s)	112, 323, 1034
XspI	CTAG	2 cut(s)	357, 1104
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.