Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00072

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Forward (+)

215765 .. 216906

Gene Structure 1142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G002340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGAGCCAGATGAGGAAGTTGAAGATAGTAACAGTAATATAAATGCCACAACAGAGGGTGTGAGTCCGAGTTCTTTACCGGAAGGGGAAAATTTCAAGGAATTGACTGCTGATGATGTAGTAGGAAGAGAGTTTCCAACAGTGGAGGATGCTGAAAGATGGTATAGGATGTATGGGACTGCCATTGGTTTTGGTGTCCGAAAGCAGAGAGTGACAAGGGGGATTGGAGGGAGGGTTACCCGGCGAAGAATGGTCTGTTGTAAAGAAGGAAAAAGAGATGCAAAGTGGTTGGAGAAAGAGGAGCGTGTTCGTAATCCAAGGAACGAGACCAGAGAGAACTGCCTAGCAGCATGTTGTTTCCACTATAACAAGGATTCTGGCACATATTTTGTCACTGAATTCAAGACTGAACACAGTCATGAATTAGCAAAGCCAAAGGAGACTCACTTCATTCGATCAAATCGATGTGTCAGCAACGCAGATTTGGCTCATGTTAATGCAATGCGGAGTTGTTCAATAAGCACCTCCCGCGCGTATGACTACATTGTCAACACTAGTGGTGGATTTGAGTTTGTTGGATATACTTCCAAGGATATGTTCAATAAGATGGATGCTGACCGAAGAGCAAAGCTTATTGATGGGGATGCACAGGCTGCAATTGCCTATATGAATGCGAAGGCCATAGAAGATCCAGGGTTTATGTGCAAGTTCAGCGTTGATGTTGATGGGAGACTAGCGAATCTGTTCTGGAGAGACTCAACTTCCTTTGGCTACAGGCCAAGACCTCTTTGTTGGGTTACACTGACTCATGGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

272

Amino Acids

30.91

Weight (kDa)

6.61

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	54 - 143	2.6e-15	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	545
AccII	CGCG	2 cut(s)	531, 533
AciI	CCGC	2 cut(s)	505, 529
AclWI	GGATC	1 cut(s)	683
AcsI	RAATTY	2 cut(s)	91, 398
AgsI	TTSAA	5 cut(s)	23, 97, 403, 516, 601
AhlI	ACTAGT	1 cut(s)	554
AjnI	CCWGG	1 cut(s)	691
AjuI	GAANNNNNNNTTGG	2 cut(s)	581, 613
AluBI	AGCT	1 cut(s)	631
AluI	AGCT	1 cut(s)	631
Alw26I	GTCTC	4 cut(s)	320, 434, 724, 747
AlwI	GGATC	1 cut(s)	683
AoxI	GGCC	2 cut(s)	678, 776
ApeKI	GCWGC	2 cut(s)	347, 653
ApoI	RAATTY	2 cut(s)	91, 398
Asp700I	GAANNNNTTC	1 cut(s)	743
AspLEI	GCGC	1 cut(s)	533
AsuC2I	CCSGG	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	359, 640
BccI	CCATC	4 cut(s)	153, 601, 632, 719
BciT130I	CCWGG	1 cut(s)	693
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	4 cut(s)	320, 434, 724, 747
BcuI	ACTAGT	1 cut(s)	554
BfaI	CTAG	3 cut(s)	344, 555, 734
BfmI	CTRYAG	1 cut(s)	772
BisI	GCNGC	2 cut(s)	348, 654
BlsI	GCNGC	2 cut(s)	349, 655
Bme1390I	CCNGG	2 cut(s)	241, 693
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	241, 693
BmsI	GCATC	4 cut(s)	139, 268, 601, 634
BpmI	CTGGAG	1 cut(s)	769
BpuMI	CCSGG	1 cut(s)	241
Bsa29I	ATCGAT	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	3 cut(s)	317, 588, 692
BsaWI	WCCGGW	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	693
BseCI	ATCGAT	1 cut(s)	463
BseDI	CCNNGG	3 cut(s)	317, 588, 692
BseGI	GGATG	4 cut(s)	154, 174, 616, 649
BseMI	GCAATG	1 cut(s)	507
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	2 cut(s)	359, 640
Bsh1236I	CGCG	2 cut(s)	531, 533
BshFI	GGCC	2 cut(s)	680, 778
BshVI	ATCGAT	1 cut(s)	463
BsiSI	CCGG	2 cut(s)	80, 241
BslFI	GGGAC	1 cut(s)	190
BsmAI	GTCTC	4 cut(s)	320, 434, 724, 747
BsmFI	GGGAC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	2 cut(s)	680, 778
Bso31I	GGTCTC	1 cut(s)	320
Bsp143I	GATC	2 cut(s)	455, 688
BspACI	CCGC	2 cut(s)	505, 529
BspANI	GGCC	2 cut(s)	680, 778
BspDI	ATCGAT	1 cut(s)	463
BspFNI	CGCG	2 cut(s)	531, 533
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	683
BspQI	GCTCTTC	1 cut(s)	616
BspTNI	GGTCTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	507
BssECI	CCNNGG	3 cut(s)	317, 588, 692
BssMI	GATC	2 cut(s)	455, 688
BssT1I	CCWWGG	2 cut(s)	317, 588
Bst2UI	CCWGG	1 cut(s)	693
Bst4CI	ACNGT	3 cut(s)	35, 142, 416
Bst6I	CTCTTC	2 cut(s)	121, 616
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstEII	GGTNACC	1 cut(s)	235
BstF5I	GGATG	4 cut(s)	154, 174, 616, 649
BstFNI	CGCG	2 cut(s)	531, 533
BstHHI	GCGC	1 cut(s)	533
BstKTI	GATC	2 cut(s)	458, 691
BstMAI	GTCTC	4 cut(s)	320, 434, 724, 747
BstMBI	GATC	2 cut(s)	455, 688
BstMWI	GCNNNNNNNGC	5 cut(s)	485, 528, 653, 659, 711
BstNI	CCWGG	1 cut(s)	693
BstNSI	RCATGY	1 cut(s)	354
BstPI	GGTNACC	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	239, 691
BstSFI	CTRYAG	1 cut(s)	772
BstUI	CGCG	2 cut(s)	531, 533
BstV1I	GCAGC	2 cut(s)	359, 640
BstX2I	RGATCY	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	688
Bsu15I	ATCGAT	1 cut(s)	463
BsuRI	GGCC	2 cut(s)	680, 778
BsuTUI	ATCGAT	1 cut(s)	463
BtsCI	GGATG	4 cut(s)	154, 174, 616, 649
BtsIMutI	CAGTG	3 cut(s)	147, 393, 800
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	1 cut(s)	533
ClaI	ATCGAT	1 cut(s)	463
CspCI	CAANNNNNGTGG	2 cut(s)	538, 573
CviAII	CATG	4 cut(s)	351, 419, 491, 809
CviJI	RGCY	8 cut(s)	7, 433, 488, 631, 653, 680, 771, 778
CviKI_1	RGCY	8 cut(s)	7, 433, 488, 631, 653, 680, 771, 778
DpnI	GATC	2 cut(s)	457, 690
DpnII	GATC	2 cut(s)	455, 688
DrdI	GACNNNNNNGTC	1 cut(s)	545
DseDI	GACNNNNNNGTC	1 cut(s)	545
Eam1104I	CTCTTC	2 cut(s)	121, 616
EarI	CTCTTC	2 cut(s)	121, 616
Eco130I	CCWWGG	2 cut(s)	317, 588
Eco31I	GGTCTC	1 cut(s)	320
Eco91I	GGTNACC	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	235
EcoRI	GAATTC	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	691
EcoT14I	CCWWGG	2 cut(s)	317, 588
ErhI	CCWWGG	2 cut(s)	317, 588
FaeI	CATG	4 cut(s)	354, 422, 494, 812
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	4 cut(s)	350, 418, 490, 808
FauI	CCCGC	1 cut(s)	536
Fnu4HI	GCNGC	2 cut(s)	348, 654
FokI	GGATG	4 cut(s)	161, 181, 623, 656
Fsp4HI	GCNGC	2 cut(s)	348, 654
FspBI	CTAG	3 cut(s)	344, 555, 734
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	2 cut(s)	348, 654
GsuI	CTGGAG	1 cut(s)	769
HaeIII	GGCC	2 cut(s)	680, 778
HapII	CCGG	2 cut(s)	80, 241
HhaI	GCGC	1 cut(s)	533
Hin1II	CATG	4 cut(s)	354, 422, 494, 812
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	6 cut(s)	64, 374, 442, 739, 755, 805
HpaII	CCGG	2 cut(s)	80, 241
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	2 cut(s)	69, 200
Hpy188III	TCNNGA	3 cut(s)	403, 419, 748
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	3 cut(s)	77, 260, 670
HpyCH4III	ACNGT	3 cut(s)	35, 142, 416
HpyCH4V	TGCA	5 cut(s)	281, 500, 647, 656, 705
HpyF10VI	GCNNNNNNNGC	5 cut(s)	485, 528, 653, 659, 711
Hsp92II	CATG	4 cut(s)	354, 422, 494, 812
HspAI	GCGC	1 cut(s)	531
Kzo9I	GATC	2 cut(s)	455, 688
LguI	GCTCTTC	1 cut(s)	616
LmnI	GCTCC	2 cut(s)	4, 301
Lsp1109I	GCAGC	2 cut(s)	359, 640
LweI	GCATC	4 cut(s)	139, 268, 601, 634
MaeI	CTAG	3 cut(s)	344, 555, 734
MaeIII	GTNAC	5 cut(s)	29, 211, 235, 391, 796
MalI	GATC	2 cut(s)	457, 690
MboI	GATC	2 cut(s)	455, 688
MboII	GAAGA	5 cut(s)	35, 138, 258, 633, 698
MfeI	CAATTG	1 cut(s)	657
MflI	RGATCY	1 cut(s)	688
MluCI	AATT	5 cut(s)	91, 101, 398, 422, 657
MlyI	GAGTC	4 cut(s)	73, 436, 749, 799
MmeI	TCCRAC	3 cut(s)	161, 270, 556
MnlI	CCTC	8 cut(s)	7, 49, 139, 221, 225, 292, 535, 795
MroXI	GAANNNNTTC	1 cut(s)	743
MseI	TTAA	2 cut(s)	495, 817
MslI	CAYNNNNRTG	2 cut(s)	417, 495
MspI	CCGG	2 cut(s)	80, 241
MspR9I	CCNGG	2 cut(s)	241, 693
MunI	CAATTG	1 cut(s)	657
Mva1269I	GAATGC	1 cut(s)	676
MvaI	CCWGG	1 cut(s)	693
MvnI	CGCG	2 cut(s)	531, 533
MwoI	GCNNNNNNNGC	5 cut(s)	485, 528, 653, 659, 711
NciI	CCSGG	1 cut(s)	241
NdeII	GATC	2 cut(s)	455, 688
NlaIII	CATG	4 cut(s)	354, 422, 494, 812
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	211, 391
NspI	RCATGY	1 cut(s)	354
PagI	TCATGA	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	1 cut(s)	460
PctI	GAATGC	1 cut(s)	676
PdmI	GAANNNNTTC	1 cut(s)	743
PfeI	GAWTC	2 cut(s)	374, 739
PkrI	GCNGC	2 cut(s)	349, 655
PleI	GAGTC	4 cut(s)	72, 436, 749, 799
PpsI	GAGTC	4 cut(s)	72, 436, 749, 799
Psp6I	CCWGG	1 cut(s)	691
PspEI	GGTNACC	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	691
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	688
RseI	CAYNNNNRTG	2 cut(s)	417, 495
SapI	GCTCTTC	1 cut(s)	616
SaqAI	TTAA	2 cut(s)	495, 817
SatI	GCNGC	2 cut(s)	348, 654
Sau3AI	GATC	2 cut(s)	455, 688
SchI	GAGTC	4 cut(s)	73, 436, 749, 799
ScrFI	CCNGG	2 cut(s)	241, 693
SetI	ASST	3 cut(s)	527, 633, 787
SfaNI	GCATC	4 cut(s)	139, 268, 601, 634
SfcI	CTRYAG	1 cut(s)	772
SmiMI	CAYNNNNRTG	2 cut(s)	417, 495
SpeI	ACTAGT	1 cut(s)	554
Sse9I	AATT	5 cut(s)	91, 101, 398, 422, 657
SsiI	CCGC	2 cut(s)	505, 529
SspMI	CTAG	3 cut(s)	344, 555, 734
StyD4I	CCNGG	2 cut(s)	239, 691
StyI	CCWWGG	2 cut(s)	317, 588
TaaI	ACNGT	3 cut(s)	35, 142, 416
TaqI	TCGA	2 cut(s)	454, 463
TaqII	GACCGA	1 cut(s)	633
TasI	AATT	5 cut(s)	91, 101, 398, 422, 657
TfiI	GAWTC	2 cut(s)	374, 739
Tru1I	TTAA	2 cut(s)	495, 817
Tru9I	TTAA	2 cut(s)	495, 817
TscAI	CASTG	3 cut(s)	147, 400, 807
TseFI	GTSAC	2 cut(s)	211, 391
TseI	GCWGC	2 cut(s)	347, 653
Tsp45I	GTSAC	2 cut(s)	211, 391
TspDTI	ATGAA	3 cut(s)	435, 439, 683
TspRI	CASTG	3 cut(s)	147, 400, 807
XapI	RAATTY	2 cut(s)	91, 398
XceI	RCATGY	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	743
XspI	CTAG	3 cut(s)	344, 555, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.