Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Forward (+)

29516978 .. 29519349

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018416

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTGGATCAAAAACAGAGACCAACTGGAAAATCTGGAAAGAAAGGAAGTGACAGACAATCTTCACCGGAAAAACGCAGGCAACTTTCCGTCTCCTCATCAGCGCTTATCGGCCACCACACTTCGGCGGCGCGTGAACCGGGCAGATGACTCCACGGTGAAAAGCAATGGGGGGTTTGAGTTTGTGGGAGACACTGAGAAGGATCCTTTCAACAAGATAGAGGCGGAGCCAAGGGCCAAATTATTTAAGCAGGGGGAAGAAACTGCACCAATAGTGGAGGTGAGTGACATTACAATGCCACCTTGGAGCATTAACCTAGTGGGGTTCGGGGATGAGTATAGATGCGATCACGTTGACATACCACGGGGAGTGACTTATAGCTATGTCTCATTGTCACCACATGTTAAAGCGGTTAGTGCCGACACGGCATCAACATTACTTAGGCAGATTGCTGGTCTGACATCATTAGCAACAAAGCAGTCACTAAAGGCGCGTGACGAGATTTTGCGCCTGAAGAGGGACAATGAGCTGGCACTCAAGACAAAGGAAGCTGAAGCTGCGGTGCTGAAGAGGGAATTAGCTGAGTGTCGGCGAGAGTTGGAATTGGTGAAGTCGGCAGATAAATATAGTAACAGAACCATCAAAGAGGTTGGCGGGAATTCTAAAAAGCAGATTACGGATAACTGCAATAGGGGTCAATCTTCAGAGGGACCTGTTGATATTCAACTTTTACGCTCGCTGGGCGGGTGGAAAACTGGCTTTGCCCCAGACAAAGATATGGAATTTGATTCAAGTAAGCGTAAACGGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

30.46

Weight (kDa)

9.23

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	132, 493
AciI	CCGC	6 cut(s)	127, 224, 410, 560, 654, 744
AclWI	GGATC	3 cut(s)	14, 197, 210
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	2 cut(s)	658, 782
AcuI	CTGAAG	4 cut(s)	533, 573, 587, 687
AfeI	AGCGCT	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	123, 517
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	3 cut(s)	211, 725, 792
AluBI	AGCT	5 cut(s)	381, 529, 551, 557, 581
AluI	AGCT	5 cut(s)	381, 529, 551, 557, 581
Alw26I	GTCTC	4 cut(s)	12, 96, 183, 391
AlwI	GGATC	3 cut(s)	14, 197, 210
Aor51HI	AGCGCT	1 cut(s)	104
AoxI	GGCC	2 cut(s)	111, 234
ApeKI	GCWGC	1 cut(s)	557
ApoI	RAATTY	2 cut(s)	658, 782
AspLEI	GCGC	4 cut(s)	105, 132, 493, 510
AspS9I	GGNCC	2 cut(s)	234, 710
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	5 cut(s)	56, 169, 292, 387, 619
AvaII	GGWCC	1 cut(s)	710
BamHI	GGATCC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	1 cut(s)	647
BceAI	ACGGC	1 cut(s)	441
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	4 cut(s)	12, 96, 183, 391
BfaI	CTAG	1 cut(s)	317
BfoI	RGCGCY	1 cut(s)	106
BglI	GCCNNNNNGGC	1 cut(s)	425
BisI	GCNGC	2 cut(s)	128, 558
BlsI	GCNGC	2 cut(s)	129, 559
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	710
BmgT120I	GGNCC	2 cut(s)	234, 710
BmiI	GGNNCC	3 cut(s)	204, 228, 711
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	2 cut(s)	332, 437
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	4 cut(s)	153, 230, 302, 362
BsaWI	WCCGGW	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 517
Bse1I	ACTGG	2 cut(s)	30, 760
Bse3DI	GCAATG	1 cut(s)	172
BseDI	CCNNGG	4 cut(s)	153, 230, 302, 362
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	2 cut(s)	123, 517
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	186, 573
BseNI	ACTGG	2 cut(s)	30, 760
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	544
BseYI	CCCAGC	1 cut(s)	739
BsgI	GTGCAG	1 cut(s)	249
Bsh1236I	CGCG	2 cut(s)	132, 493
BshFI	GGCC	2 cut(s)	113, 236
BsiSI	CCGG	2 cut(s)	67, 139
BslFI	GGGAC	2 cut(s)	533, 723
BslI	CCNNNNNNNGG	2 cut(s)	123, 517
BsmAI	GTCTC	4 cut(s)	12, 96, 183, 391
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	2 cut(s)	533, 723
BsnI	GGCC	2 cut(s)	113, 236
Bso31I	GGTCTC	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	6, 202, 346
BspACI	CCGC	6 cut(s)	127, 224, 410, 560, 654, 744
BspANI	GGCC	2 cut(s)	113, 236
BspCNI	CTCAG	2 cut(s)	187, 574
BspFNI	CGCG	2 cut(s)	132, 493
BspLI	GGNNCC	3 cut(s)	204, 228, 711
BspPI	GGATC	3 cut(s)	14, 197, 210
BspTNI	GGTCTC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	2 cut(s)	30, 760
BssECI	CCNNGG	4 cut(s)	153, 230, 302, 362
BssMI	GATC	3 cut(s)	6, 202, 346
BssT1I	CCWWGG	2 cut(s)	230, 302
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	2 cut(s)	509, 563
BstC8I	GCNNGC	3 cut(s)	79, 531, 737
BstDEI	CTNAG	3 cut(s)	195, 440, 582
BstDSI	CCRYGG	2 cut(s)	153, 362
BstF5I	GGATG	1 cut(s)	337
BstFNI	CGCG	2 cut(s)	132, 493
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	4 cut(s)	105, 132, 493, 510
BstKTI	GATC	3 cut(s)	9, 205, 349
BstMAI	GTCTC	4 cut(s)	12, 96, 183, 391
BstMBI	GATC	3 cut(s)	6, 202, 346
BstMWI	GCNNNNNNNGC	5 cut(s)	416, 425, 557, 741, 805
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	138
BstUI	CGCG	2 cut(s)	132, 493
BstV1I	GCAGC	1 cut(s)	544
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	113, 236
BtgI	CCRYGG	2 cut(s)	153, 362
BtsCI	GGATG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	79, 531, 737
CfoI	GCGC	4 cut(s)	105, 132, 493, 510
Cfr13I	GGNCC	2 cut(s)	234, 710
CviAII	CATG	1 cut(s)	401
CviJI	RGCY	9 cut(s)	113, 229, 236, 381, 529, 551, 557, 581, 759
CviKI_1	RGCY	9 cut(s)	113, 229, 236, 381, 529, 551, 557, 581, 759
DdeI	CTNAG	3 cut(s)	195, 440, 582
DpnI	GATC	3 cut(s)	8, 204, 348
DpnII	GATC	3 cut(s)	6, 202, 346
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	509, 563
EarI	CTCTTC	2 cut(s)	509, 563
EciI	GGCGGA	1 cut(s)	239
Eco130I	CCWWGG	2 cut(s)	230, 302
Eco31I	GGTCTC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	710
Eco47III	AGCGCT	1 cut(s)	104
Eco57I	CTGAAG	4 cut(s)	533, 573, 587, 687
EcoO109I	RGGNCCY	1 cut(s)	710
EcoRI	GAATTC	1 cut(s)	658
EcoT14I	CCWWGG	2 cut(s)	230, 302
ErhI	CCWWGG	2 cut(s)	230, 302
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	1 cut(s)	404
FaiI	YATR	7 cut(s)	339, 359, 378, 384, 402, 627, 779
FaqI	GGGAC	2 cut(s)	533, 723
FatI	CATG	1 cut(s)	400
FauI	CCCGC	2 cut(s)	647, 737
Fnu4HI	GCNGC	2 cut(s)	128, 558
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	2 cut(s)	128, 558
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	4 cut(s)	104, 131, 492, 509
GluI	GCNGC	2 cut(s)	128, 558
GsaI	CCCAGC	1 cut(s)	743
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	2 cut(s)	113, 236
HapII	CCGG	2 cut(s)	67, 139
HhaI	GCGC	4 cut(s)	105, 132, 493, 510
Hin1II	CATG	1 cut(s)	404
Hin6I	GCGC	4 cut(s)	103, 130, 491, 508
HinP1I	GCGC	4 cut(s)	103, 130, 491, 508
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	2 cut(s)	149, 788
HpaII	CCGG	2 cut(s)	67, 139
HphI	GGTGA	5 cut(s)	56, 169, 292, 387, 619
Hpy166II	GTNNAC	3 cut(s)	136, 355, 803
Hpy188I	TCNGA	2 cut(s)	459, 706
Hpy188III	TCNNGA	2 cut(s)	35, 538
Hpy8I	GTNNAC	3 cut(s)	136, 355, 803
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	2 cut(s)	266, 687
HpyF10VI	GCNNNNNNNGC	5 cut(s)	416, 425, 557, 741, 805
HpyF3I	CTNAG	3 cut(s)	195, 440, 582
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	404
HspAI	GCGC	4 cut(s)	103, 130, 491, 508
Kzo9I	GATC	3 cut(s)	6, 202, 346
LmnI	GCTCC	2 cut(s)	226, 306
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	2 cut(s)	332, 437
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	7 cut(s)	49, 284, 370, 393, 480, 494, 629
MalI	GATC	3 cut(s)	8, 204, 348
MboI	GATC	3 cut(s)	6, 202, 346
MboII	GAAGA	5 cut(s)	53, 269, 526, 580, 693
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	5 cut(s)	239, 575, 602, 658, 782
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	579
MnlI	CCTC	7 cut(s)	105, 214, 271, 510, 564, 640, 700
MseI	TTAA	3 cut(s)	246, 312, 405
MslI	CAYNNNNRTG	1 cut(s)	293
MspI	CCGG	2 cut(s)	67, 139
MspR9I	CCNGG	1 cut(s)	140
MvnI	CGCG	2 cut(s)	132, 493
MwoI	GCNNNNNNNGC	5 cut(s)	416, 425, 557, 741, 805
NciI	CCSGG	1 cut(s)	140
NdeII	GATC	3 cut(s)	6, 202, 346
NlaIII	CATG	1 cut(s)	404
NlaIV	GGNNCC	3 cut(s)	204, 228, 711
NmuCI	GTSAC	6 cut(s)	49, 284, 370, 393, 480, 494
NspI	RCATGY	1 cut(s)	404
PciI	ACATGT	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	788
PkrI	GCNGC	2 cut(s)	129, 559
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	710
PscI	ACATGT	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	710
PspFI	CCCAGC	1 cut(s)	739
PspN4I	GGNNCC	3 cut(s)	204, 228, 711
PspPI	GGNCC	2 cut(s)	234, 710
PspPPI	RGGWCCY	1 cut(s)	710
PsuI	RGATCY	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	3 cut(s)	246, 312, 405
SatI	GCNGC	2 cut(s)	128, 558
Sau3AI	GATC	3 cut(s)	6, 202, 346
Sau96I	GGNCC	2 cut(s)	234, 710
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	140
SfaNI	GCATC	2 cut(s)	332, 437
SinI	GGWCC	1 cut(s)	710
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	5 cut(s)	239, 575, 602, 658, 782
SsiI	CCGC	6 cut(s)	127, 224, 410, 560, 654, 744
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	2 cut(s)	230, 302
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	354
TasI	AATT	5 cut(s)	239, 575, 602, 658, 782
TauI	GCSGC	1 cut(s)	130
TfiI	GAWTC	1 cut(s)	788
Tru1I	TTAA	3 cut(s)	246, 312, 405
Tru9I	TTAA	3 cut(s)	246, 312, 405
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	6 cut(s)	49, 284, 370, 393, 480, 494
TseI	GCWGC	1 cut(s)	557
Tsp45I	GTSAC	6 cut(s)	49, 284, 370, 393, 480, 494
TspGWI	ACGGA	2 cut(s)	78, 692
TspRI	CASTG	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	710
XapI	RAATTY	2 cut(s)	658, 782
XceI	RCATGY	1 cut(s)	404
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.