Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Reverse (-)

21042020 .. 21042544

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0218300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTGCTATGGTCAGCAGCGACCCTTCTCCCGGGACACCCCTTCGCCACCGCGTGCCGTCCGATCGCCCAACGACAACGACAACAACGCCGTCGCCGTCGAAGATCTGCGCGGCCGCCTCGCCGAGACGGAGGCGCGTCTCACCCGCGCTAGGGCTCGCGAGGCCGAGCTCAACCGCCGCCTCGACGAGATGAAACGCTTCGTTTCCGTCATGGAGATCATCGAAACCTACCTCCTCCGACGCTTCCGGGAGCAGCAAGATTACGAATCTACTGCTGTGGAAGATTATTCATGGAAAATGAGATTTACTGATAGTGGTGTCAGTGTGAATGTTGTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

113

Amino Acids

13.25

Weight (kDa)

6.34

Isoelectric Point (pI)

65.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	52, 111, 136, 147, 159
AciI	CCGC	6 cut(s)	50, 111, 115, 145, 175, 178
AcoI	YGGCCR	1 cut(s)	112
AdeI	CACNNNGTG	1 cut(s)	53
AfiI	CCNNNNNNNGG	3 cut(s)	30, 150, 151
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	2 cut(s)	119, 143
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	2 cut(s)	112, 162
ApeKI	GCWGC	2 cut(s)	16, 253
Asp700I	GAANNNNTTC	1 cut(s)	197
AspLEI	GCGC	3 cut(s)	111, 136, 149
AsuC2I	CCSGG	3 cut(s)	31, 32, 248
AsuHPI	GGTGA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	30
BanII	GRGCYC	2 cut(s)	157, 171
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	28, 265
BceAI	ACGGC	3 cut(s)	41, 74, 80
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BcnI	CCSGG	3 cut(s)	31, 32, 248
BcoDI	GTCTC	2 cut(s)	119, 143
BfaI	CTAG	1 cut(s)	150
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	5 cut(s)	17, 112, 115, 178, 254
BlsI	GCNGC	5 cut(s)	18, 113, 116, 179, 255
Bme1390I	CCNGG	3 cut(s)	31, 32, 248
BmeT110I	CYCGRG	1 cut(s)	30
BmrFI	CCNGG	3 cut(s)	31, 32, 248
BpuMI	CCSGG	3 cut(s)	31, 32, 248
BsaJI	CCNNGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 150, 151
BseDI	CCNNGG	1 cut(s)	30
BseLI	CCNNNNNNNGG	3 cut(s)	30, 150, 151
BseRI	GAGGAG	1 cut(s)	224
BseX3I	CGGCCG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	28, 265
Bsh1236I	CGCG	5 cut(s)	52, 111, 136, 147, 159
Bsh1285I	CGRYCG	2 cut(s)	65, 115
BshFI	GGCC	2 cut(s)	114, 164
BsiEI	CGRYCG	2 cut(s)	65, 115
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	31, 247
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	3 cut(s)	30, 150, 151
BsmAI	GTCTC	2 cut(s)	119, 143
BsmBI	CGTCTC	2 cut(s)	119, 143
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	114, 164
BsoBI	CYCGRG	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	157, 171
Bsp143I	GATC	3 cut(s)	62, 103, 216
Bsp68I	TCGCGA	1 cut(s)	159
BspACI	CCGC	6 cut(s)	50, 111, 115, 145, 175, 178
BspANI	GGCC	2 cut(s)	114, 164
BspFNI	CGCG	5 cut(s)	52, 111, 136, 147, 159
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	3 cut(s)	62, 103, 216
BstC8I	GCNNGC	2 cut(s)	54, 157
BstFNI	CGCG	5 cut(s)	52, 111, 136, 147, 159
BstHHI	GCGC	3 cut(s)	111, 136, 149
BstKTI	GATC	3 cut(s)	65, 106, 219
BstMAI	GTCTC	2 cut(s)	119, 143
BstMBI	GATC	3 cut(s)	62, 103, 216
BstMCI	CGRYCG	2 cut(s)	65, 115
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSCI	CCNGG	3 cut(s)	29, 30, 246
BstUI	CGCG	5 cut(s)	52, 111, 136, 147, 159
BstV1I	GCAGC	2 cut(s)	28, 265
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BstZI	CGGCCG	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	114, 164
BtsIMutI	CAGTG	1 cut(s)	328
BtuMI	TCGCGA	1 cut(s)	159
Cac8I	GCNNGC	2 cut(s)	54, 157
CciNI	GCGGCCGC	1 cut(s)	112
CfoI	GCGC	3 cut(s)	111, 136, 149
Cfr9I	CCCGGG	1 cut(s)	30
CseI	GACGC	2 cut(s)	125, 249
CviAII	CATG	2 cut(s)	211, 291
CviJI	RGCY	4 cut(s)	114, 155, 164, 169
CviKI_1	RGCY	4 cut(s)	114, 155, 164, 169
DpnI	GATC	3 cut(s)	64, 105, 218
DpnII	GATC	3 cut(s)	62, 103, 216
DraIII	CACNNNGTG	1 cut(s)	53
EaeI	YGGCCR	1 cut(s)	112
EagI	CGGCCG	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	169
EclXI	CGGCCG	1 cut(s)	112
Eco24I	GRGCYC	2 cut(s)	157, 171
Eco52I	CGGCCG	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	169
EcoT38I	GRGCYC	2 cut(s)	157, 171
Esp3I	CGTCTC	2 cut(s)	119, 143
FaeI	CATG	2 cut(s)	214, 294
FaiI	YATR	3 cut(s)	9, 212, 292
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	2 cut(s)	210, 290
FauI	CCCGC	1 cut(s)	152
Fnu4HI	GCNGC	5 cut(s)	17, 112, 115, 178, 254
FriOI	GRGCYC	2 cut(s)	157, 171
Fsp4HI	GCNGC	5 cut(s)	17, 112, 115, 178, 254
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	3 cut(s)	110, 135, 148
GluI	GCNGC	5 cut(s)	17, 112, 115, 178, 254
HaeIII	GGCC	2 cut(s)	114, 164
HapII	CCGG	2 cut(s)	31, 247
HgaI	GACGC	2 cut(s)	125, 249
HhaI	GCGC	3 cut(s)	111, 136, 149
Hin1II	CATG	2 cut(s)	214, 294
Hin6I	GCGC	3 cut(s)	109, 134, 147
HinP1I	GCGC	3 cut(s)	109, 134, 147
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	2 cut(s)	31, 247
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	62, 239
Hpy188III	TCNNGA	1 cut(s)	158
Hpy99I	CGWCG	4 cut(s)	95, 101, 188, 243
HpyAV	CCTTC	2 cut(s)	34, 51
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
Hsp92II	CATG	2 cut(s)	214, 294
HspAI	GCGC	3 cut(s)	109, 134, 147
Kzo9I	GATC	3 cut(s)	62, 103, 216
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	2 cut(s)	44, 260
Lsp1109I	GCAGC	2 cut(s)	28, 265
MaeI	CTAG	1 cut(s)	150
MalI	GATC	3 cut(s)	64, 105, 218
MboI	GATC	3 cut(s)	62, 103, 216
MboII	GAAGA	2 cut(s)	113, 293
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	2 cut(s)	157, 171
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	6 cut(s)	124, 128, 154, 191, 242, 245
MroXI	GAANNNNTTC	1 cut(s)	197
MspI	CCGG	2 cut(s)	31, 247
MspR9I	CCNGG	3 cut(s)	31, 32, 248
MvnI	CGCG	5 cut(s)	52, 111, 136, 147, 159
MwoI	GCNNNNNNNGC	1 cut(s)	161
NciI	CCSGG	3 cut(s)	31, 32, 248
NdeII	GATC	3 cut(s)	62, 103, 216
NlaIII	CATG	2 cut(s)	214, 294
NmeAIII	GCCGAG	2 cut(s)	148, 190
NotI	GCGGCCGC	1 cut(s)	112
NruI	TCGCGA	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	266
PfoI	TCCNGGA	1 cut(s)	246
PkrI	GCNGC	5 cut(s)	18, 113, 116, 179, 255
Ple19I	CGATCG	1 cut(s)	65
Psp124BI	GAGCTC	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	103
PvuI	CGATCG	1 cut(s)	65
RruI	TCGCGA	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	171
SatI	GCNGC	5 cut(s)	17, 112, 115, 178, 254
Sau3AI	GATC	3 cut(s)	62, 103, 216
ScrFI	CCNGG	3 cut(s)	31, 32, 248
SduI	GDGCHC	2 cut(s)	157, 171
SetI	ASST	3 cut(s)	171, 230, 234
SmaI	CCCGGG	1 cut(s)	32
SsiI	CCGC	6 cut(s)	50, 111, 115, 145, 175, 178
SspMI	CTAG	1 cut(s)	150
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	3 cut(s)	29, 30, 246
TaqI	TCGA	3 cut(s)	99, 183, 222
TauI	GCSGC	3 cut(s)	114, 117, 180
TfiI	GAWTC	1 cut(s)	266
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	2 cut(s)	16, 253
TspDTI	ATGAA	2 cut(s)	206, 279
TspGWI	ACGGA	2 cut(s)	143, 196
TspMI	CCCGGG	1 cut(s)	30
TspRI	CASTG	1 cut(s)	328
XmaI	CCCGGG	1 cut(s)	30
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.