Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8058120.1

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 566

Gene Structure 565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8058120.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 565 bp

atagacaacacaacaaagggttgcagcaaggaagggactcgagctgatgaaacacgaactgatgatgaagcattcaactatgtcccagactacagaagattgaaggttgaagacgtgaaggctatgacgcttaagacagtagaggacgcggaaaggttctattctgcctattccttggcacttggctttggatttaggaaggataccaaaggagaggttaaaggtatgatccggaggagacaatggctttgcaacaagcaagggactcgagctaaaaagtggttcatactcgacggaaggggtcgtcctcctcggagaattacaatggtaaattgcaaggctaaatttagggtcaattacaacgagattgtaggagcttatatggtgaaagcctttgttccagagcattctcacgagttagcaactggaaaccagactgccttcattcgttcgcatcgaaatgtctgcaaatcagacttgccccatgcaaatacaatgtctaaagtgtcaatcagaccttgccatgcgtatgagtacatggtggagcaggcggggggatataaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05160 map03013 map05160

Pfam Domains

Protein Families

PCI

Protein Analysis

188

Amino Acids

21.64

Weight (kDa)

9.64

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	231
AciI	CCGC	2 cut(s)	149, 551
AclWI	GGATC	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	344
AfaI	GTAC	1 cut(s)	536
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	3 cut(s)	76, 103, 110
AjiI	CACGTC	1 cut(s)	115
AluBI	AGCT	3 cut(s)	44, 272, 377
AluI	AGCT	3 cut(s)	44, 272, 377
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	223
Ama87I	CYCGRG	2 cut(s)	39, 267
Aor13HI	TCCGGA	1 cut(s)	231
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	1 cut(s)	344
ArsI	GACNNNNNNTTYG	4 cut(s)	231, 263, 482, 514
AsuHPI	GGTGA	1 cut(s)	397
AvaI	CYCGRG	2 cut(s)	39, 267
BauI	CACGAG	1 cut(s)	413
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	36
BcgI	CGANNNNNNTGC	4 cut(s)	248, 282, 447, 481
BciVI	GTATCC	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	232
BfmI	CTRYAG	1 cut(s)	91
BfrI	CTTAAG	1 cut(s)	131
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
BmeT110I	CYCGRG	2 cut(s)	39, 267
BmgBI	CACGTC	1 cut(s)	115
BmsI	GCATC	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	174, 311
BsaWI	WCCGGW	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	430
BseAI	TCCGGA	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	174, 311
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	2 cut(s)	250, 300
BseXI	GCAGC	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	149
BsiHKCI	CYCGRG	2 cut(s)	39, 267
BsiSI	CCGG	1 cut(s)	232
BslFI	GGGAC	3 cut(s)	49, 68, 277
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	3 cut(s)	49, 68, 277
BsmI	GAATGC	2 cut(s)	71, 406
BsoBI	CYCGRG	2 cut(s)	39, 267
Bsp13I	TCCGGA	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	228
BspACI	CCGC	2 cut(s)	149, 551
BspEI	TCCGGA	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	149
BspPI	GGATC	1 cut(s)	223
BspTI	CTTAAG	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	2 cut(s)	174, 311
BssMI	GATC	1 cut(s)	228
BssSI	CACGAG	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	139
BstAFI	CTTAAG	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	549
BstFNI	CGCG	1 cut(s)	149
BstKTI	GATC	1 cut(s)	231
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	91
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	196
BtrI	CACGTC	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	549
CseI	GACGC	2 cut(s)	136, 155
Csp6I	GTAC	1 cut(s)	535
CviAII	CATG	3 cut(s)	485, 524, 538
CviJI	RGCY	8 cut(s)	44, 122, 186, 247, 272, 341, 377, 392
CviKI_1	RGCY	8 cut(s)	44, 122, 186, 247, 272, 341, 377, 392
CviQI	GTAC	1 cut(s)	535
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	174
Eco88I	CYCGRG	2 cut(s)	39, 267
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	3 cut(s)	488, 527, 541
FaqI	GGGAC	3 cut(s)	49, 68, 277
FatI	CATG	3 cut(s)	484, 523, 537
FauI	CCCGC	1 cut(s)	544
Fnu4HI	GCNGC	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	25
HapII	CCGG	1 cut(s)	232
HgaI	GACGC	2 cut(s)	136, 155
Hin1II	CATG	3 cut(s)	488, 527, 541
HinfI	GANTC	2 cut(s)	37, 265
HpaII	CCGG	1 cut(s)	232
HphI	GGTGA	1 cut(s)	397
Hpy188I	TCNGA	3 cut(s)	315, 475, 515
Hpy188III	TCNNGA	3 cut(s)	232, 401, 413
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	6 cut(s)	26, 97, 112, 193, 291, 451
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	5 cut(s)	24, 252, 336, 468, 488
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	488, 527, 541
Kpn2I	TCCGGA	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	374, 544
LpnPI	CCDG	6 cut(s)	99, 245, 411, 414, 446, 533
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	463
MaeII	ACGT	1 cut(s)	114
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	2 cut(s)	108, 122
MluCI	AATT	4 cut(s)	318, 331, 344, 355
MlyI	GAGTC	2 cut(s)	31, 259
MnlI	CCTC	5 cut(s)	136, 208, 228, 318, 321
MroI	TCCGGA	1 cut(s)	231
MseI	TTAA	2 cut(s)	132, 219
MslI	CAYNNNNRTG	2 cut(s)	459, 528
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	1 cut(s)	232
Mva1269I	GAATGC	2 cut(s)	71, 406
MvnI	CGCG	1 cut(s)	149
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	3 cut(s)	488, 527, 541
PaeR7I	CTCGAG	2 cut(s)	39, 267
PcsI	WCGNNNNNNNCGW	1 cut(s)	454
PctI	GAATGC	2 cut(s)	71, 406
PkrI	GCNGC	1 cut(s)	26
PleI	GAGTC	2 cut(s)	31, 259
PpsI	GAGTC	2 cut(s)	31, 259
PspXI	VCTCGAGB	2 cut(s)	39, 267
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
RseI	CAYNNNNRTG	2 cut(s)	459, 528
SaqAI	TTAA	2 cut(s)	132, 219
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	1 cut(s)	228
SchI	GAGTC	2 cut(s)	31, 259
SetI	ASST	9 cut(s)	46, 108, 117, 158, 219, 226, 274, 379, 520
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	91
Sfr274I	CTCGAG	2 cut(s)	39, 267
SlaI	CTCGAG	2 cut(s)	39, 267
SmiMI	CAYNNNNRTG	2 cut(s)	459, 528
SmlI	CTYRAG	3 cut(s)	39, 131, 267
SmoI	CTYRAG	3 cut(s)	39, 131, 267
Sse9I	AATT	4 cut(s)	318, 331, 344, 355
SsiI	CCGC	2 cut(s)	149, 551
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	4 cut(s)	40, 268, 291, 457
TasI	AATT	4 cut(s)	318, 331, 344, 355
TatI	WGTACW	1 cut(s)	534
Tru1I	TTAA	2 cut(s)	132, 219
Tru9I	TTAA	2 cut(s)	132, 219
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	4 cut(s)	63, 81, 274, 433
TspGWI	ACGGA	1 cut(s)	309
Vha464I	CTTAAG	1 cut(s)	131
XapI	RAATTY	1 cut(s)	344
XhoI	CTCGAG	2 cut(s)	39, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.