Rorug02G0218000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001462
Physical Location & Seq
Forward (+)
21021346 .. 21023189
1844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0218000.1

Sequence Viewer

Length: 1065 bp
ATGGCCAGGCTTAAGGAGTACACAGCCGAGGAGATCGTATTGGCTACTGATAATTTTTCTTGGCGTTTGAGATCAGAGTCTGTAGGAATTTGGGGCAGTGTTTATAAAGGCTATGTTGACAATGAAGCAGTTTCCGTCAAATTCCTCGCCTCCCCCGAAGAACGTGGTCTTACATCTAGGGTTAAGTCCCTCGGACTAACTAGACACCGTAACCTTCTTTCAATGTTGGGCTTCTGCTCAGAGCTCAACTGCTTTGTCTATGAACATGTAGAGTATAGTCGCGTGCTGCACGAGGTCGTCAAGCAAAACCTTCATTGGCACGATCGCATTCGTATTGCCAGTCAAATTTGCTTGGCCTTGTCCTACATTATTAACAGGGCTAGGTGTGAACGTATTGTTCCTGACTATCTCAATGCATCCAACGTTCTTATCGATCAAAATCTTAATGCCAAAATCAATGTTGTGCTGAAAATATGCGACAAGCCGGATTTTGCATGGGATGTAAAGACTTTTGGCTATCTGGTTCTGAATCTCTTAACTGGCATTCCTGGAAATTTCTTTTCTTACTGTTGTGTTAGATGGTTTGTTGGTTTGCCCCACGGTTTGGACAAGACGGCAGGTCAATGGCCTATGGATTTGGCTGAGAAATTGATGAATGTGTGCCGACGCTGTGTAGACTGTAATCCTAGAGATGATTTTAGGAAAAAGTACGTTATGGTGGTAATAGTGAAAGAGATGAAAGATGTTAAGGAAAAGGCTGATGAAATTGTCAGAGGATGTTCAGGAACAAATGATCTAGTTACCAGTGGTAGGGATCAGGACTCTGATATTCCAACACAATTCTACTGCCCCATATATAAGGAAGTAATGAAAGATCCACATGTGGCTGCTGATGGATTTTCCTATGAGCGGGAAGGCATAGAGAAATGGTTCCAAACTGGGCACGACACATCACCAATGACCAATTTGAAGCTCAAGCATAAAATTCTTACCCCTAATGGTACCCTTAAGCTTCTGATCAAAGACTGGTATCGTGAAAGATCAATTCCTTATCCAAATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

354

Amino Acids

40.82

Weight (kDa)

8.35

Isoelectric Point (pI)

17.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 29 - 152 7.8e-10 Protein tyrosine and serine/threonine kinase
U-box PF04564 277 - 348 1.2e-17 U-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
Acc36I ACCTGC 1 cut(s) 608
Acc65I GGTACC 1 cut(s) 1001
AccB1I GGYRCC 1 cut(s) 1001
AccB7I CCANNNNNTGG 1 cut(s) 604
AccBSI CCGCTC 1 cut(s) 910
AccI GTMKAC 1 cut(s) 675
AccII CGCG 1 cut(s) 282
AciI CCGC 1 cut(s) 910
AclI AACGTT 1 cut(s) 423
AclWI GGATC 2 cut(s) 822, 869
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 87, 140, 345, 553, 984
AfaI GTAC 3 cut(s) 20, 710, 1003
AfiI CCNNNNNNNGG 3 cut(s) 604, 810, 909
AflII CTTAAG 2 cut(s) 11, 1007
AflIII ACRYGT 2 cut(s) 265, 880
AgsI TTSAA 2 cut(s) 222, 970
AhdI GACNNNNNGTC 1 cut(s) 618
AjnI CCWGG 2 cut(s) 5, 547
AluBI AGCT 3 cut(s) 244, 973, 1012
AluI AGCT 3 cut(s) 244, 973, 1012
Alw21I GWGCWC 1 cut(s) 246
AlwI GGATC 2 cut(s) 822, 869
AlwNI CAGNNNCTG 1 cut(s) 80
AoxI GGCC 3 cut(s) 3, 354, 626
ApeKI GCWGC 2 cut(s) 286, 887
ApoI RAATTY 5 cut(s) 87, 140, 345, 553, 984
Asp700I GAANNNNTTC 1 cut(s) 929
Asp718I GGTACC 1 cut(s) 1001
AsuHPI GGTGA 1 cut(s) 945
BaeGI GKGCMC 1 cut(s) 945
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 1001
BanII GRGCYC 1 cut(s) 246
BauI CACGAG 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 273, 874
BccI CCATC 2 cut(s) 573, 887
BceAI ACGGC 1 cut(s) 630
BciT130I CCWGG 2 cut(s) 7, 549
BclI TGATCA 1 cut(s) 1017
BfaI CTAG 5 cut(s) 177, 201, 381, 687, 797
BfmI CTRYAG 1 cut(s) 81
BfrI CTTAAG 2 cut(s) 11, 1007
BfuAI ACCTGC 1 cut(s) 608
BisI GCNGC 2 cut(s) 287, 888
BlsI GCNGC 2 cut(s) 288, 889
Bme1390I CCNGG 2 cut(s) 7, 549
BmeRI GACNNNNNGTC 1 cut(s) 618
BmiI GGNNCC 2 cut(s) 932, 1003
BmrFI CCNGG 2 cut(s) 7, 549
BmrI ACTGGG 1 cut(s) 948
BmsI GCATC 1 cut(s) 425
BmuI ACTGGG 1 cut(s) 948
BpuEI CTTGAG 1 cut(s) 959
Bsa29I ATCGAT 1 cut(s) 432
BsaBI GATNNNNATC 1 cut(s) 438
BsaJI CCNNGG 3 cut(s) 27, 190, 598
Bsc4I CCNNNNNNNGG 3 cut(s) 604, 810, 909
Bse1I ACTGG 5 cut(s) 339, 544, 804, 943, 1031
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 2 cut(s) 7, 549
BseCI ATCGAT 1 cut(s) 432
BseDI CCNNGG 3 cut(s) 27, 190, 598
BseGI GGATG 3 cut(s) 416, 505, 782
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 3 cut(s) 604, 810, 909
BseMII CTCAG 2 cut(s) 252, 633
BseNI ACTGG 5 cut(s) 339, 544, 804, 943, 1031
BseRI GAGGAG 1 cut(s) 44
BseSI GKGCMC 1 cut(s) 945
BseXI GCAGC 2 cut(s) 273, 874
BsgI GTGCAG 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 282
Bsh1285I CGRYCG 1 cut(s) 325
BshFI GGCC 3 cut(s) 5, 356, 628
BshNI GGYRCC 1 cut(s) 1001
BshVI ATCGAT 1 cut(s) 432
BsiEI CGRYCG 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 1 cut(s) 485
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 3 cut(s) 604, 810, 909
BsmFI GGGAC 1 cut(s) 172
BsmI GAATGC 2 cut(s) 327, 543
BsnI GGCC 3 cut(s) 5, 356, 628
Bsp1286I GDGCHC 2 cut(s) 246, 945
Bsp143I GATC 9 cut(s) 33, 71, 322, 433, 793, 814, 874, 1017, 1040
BspACI CCGC 1 cut(s) 910
BspANI GGCC 3 cut(s) 5, 356, 628
BspCNI CTCAG 2 cut(s) 251, 634
BspDI ATCGAT 1 cut(s) 432
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 932, 1003
BspMI ACCTGC 1 cut(s) 608
BspPI GGATC 2 cut(s) 822, 869
BspT107I GGYRCC 1 cut(s) 1001
BspTI CTTAAG 2 cut(s) 11, 1007
BsrBI CCGCTC 1 cut(s) 910
BsrI ACTGG 5 cut(s) 339, 544, 804, 943, 1031
BssECI CCNNGG 3 cut(s) 27, 190, 598
BssMI GATC 9 cut(s) 33, 71, 322, 433, 793, 814, 874, 1017, 1040
BssSI CACGAG 1 cut(s) 290
Bst2BI CACGAG 1 cut(s) 290
Bst2UI CCWGG 2 cut(s) 7, 549
Bst4CI ACNGT 4 cut(s) 209, 569, 602, 680
BstAFI CTTAAG 2 cut(s) 11, 1007
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 2 cut(s) 238, 642
BstDSI CCRYGG 1 cut(s) 598
BstF5I GGATG 3 cut(s) 416, 505, 782
BstFNI CGCG 1 cut(s) 282
BstKTI GATC 9 cut(s) 36, 74, 325, 436, 796, 817, 877, 1020, 1043
BstMBI GATC 9 cut(s) 33, 71, 322, 433, 793, 814, 874, 1017, 1040
BstMCI CGRYCG 1 cut(s) 325
BstNI CCWGG 2 cut(s) 7, 549
BstNSI RCATGY 2 cut(s) 269, 884
BstSCI CCNGG 2 cut(s) 5, 547
BstSFI CTRYAG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 945
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 273, 874
BstX2I RGATCY 1 cut(s) 874
BstYI RGATCY 1 cut(s) 874
Bsu15I ATCGAT 1 cut(s) 432
BsuRI GGCC 3 cut(s) 5, 356, 628
BsuTUI ATCGAT 1 cut(s) 432
BtgI CCRYGG 1 cut(s) 598
BtsCI GGATG 3 cut(s) 416, 505, 782
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 2 cut(s) 103, 811
BveI ACCTGC 1 cut(s) 608
Cac8I GCNNGC 1 cut(s) 284
CaiI CAGNNNCTG 1 cut(s) 80
ClaI ATCGAT 1 cut(s) 432
CseI GACGC 1 cut(s) 675
Csp6I GTAC 3 cut(s) 19, 709, 1002
CviAII CATG 3 cut(s) 266, 495, 881
CviQI GTAC 3 cut(s) 19, 709, 1002
DdeI CTNAG 2 cut(s) 238, 642
DpnI GATC 9 cut(s) 35, 73, 324, 435, 795, 816, 876, 1019, 1042
DpnII GATC 9 cut(s) 33, 71, 322, 433, 793, 814, 874, 1017, 1040
DriI GACNNNNNGTC 1 cut(s) 618
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 618
Ecl136II GAGCTC 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 246
Eco53kI GAGCTC 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 244
EcoRII CCWGG 2 cut(s) 5, 547
EcoT22I ATGCAT 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 3 cut(s) 269, 498, 884
FaqI GGGAC 1 cut(s) 172
FatI CATG 3 cut(s) 265, 494, 880
FauI CCCGC 1 cut(s) 903
FbaI TGATCA 1 cut(s) 1017
FblI GTMKAC 1 cut(s) 675
Fnu4HI GCNGC 2 cut(s) 287, 888
FokI GGATG 3 cut(s) 403, 512, 789
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 2 cut(s) 287, 888
FspBI CTAG 5 cut(s) 177, 201, 381, 687, 797
GluI GCNGC 2 cut(s) 287, 888
HaeIII GGCC 3 cut(s) 5, 356, 628
HapII CCGG 1 cut(s) 485
HgaI GACGC 1 cut(s) 675
Hin1II CATG 3 cut(s) 269, 498, 884
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 1010
HinfI GANTC 3 cut(s) 77, 529, 821
HpaII CCGG 1 cut(s) 485
HphI GGTGA 1 cut(s) 945
Hpy166II GTNNAC 4 cut(s) 21, 118, 389, 676
Hpy188I TCNGA 7 cut(s) 76, 194, 241, 528, 773, 826, 1017
Hpy188III TCNNGA 4 cut(s) 401, 783, 818, 1034
Hpy8I GTNNAC 4 cut(s) 21, 118, 389, 676
Hpy99I CGWCG 1 cut(s) 669
HpyAV CCTTC 3 cut(s) 224, 320, 908
HpyCH4III ACNGT 4 cut(s) 209, 569, 602, 680
HpyCH4IV ACGT 4 cut(s) 163, 391, 423, 711
HpyCH4V TGCA 3 cut(s) 289, 416, 494
HpyF3I CTNAG 2 cut(s) 238, 642
HpySE526I ACGT 4 cut(s) 163, 391, 423, 711
Hsp92II CATG 3 cut(s) 269, 498, 884
KpnI GGTACC 1 cut(s) 1005
Ksp22I TGATCA 1 cut(s) 1017
Kzo9I GATC 9 cut(s) 33, 71, 322, 433, 793, 814, 874, 1017, 1040
Lsp1109I GCAGC 2 cut(s) 273, 874
LweI GCATC 1 cut(s) 425
MaeI CTAG 5 cut(s) 177, 201, 381, 687, 797
MaeII ACGT 4 cut(s) 163, 391, 423, 711
MaeIII GTNAC 2 cut(s) 209, 799
MalI GATC 9 cut(s) 35, 73, 324, 435, 795, 816, 876, 1019, 1042
MbiI CCGCTC 1 cut(s) 910
MboI GATC 9 cut(s) 33, 71, 322, 433, 793, 814, 874, 1017, 1040
MboII GAAGA 1 cut(s) 170
MflI RGATCY 1 cut(s) 874
MhlI GDGCHC 2 cut(s) 246, 945
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 86, 815
MmeI TCCRAC 2 cut(s) 444, 857
MnlI CCTC 6 cut(s) 22, 155, 160, 200, 286, 767
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 418
MroXI GAANNNNTTC 1 cut(s) 929
MscI TGGCCA 1 cut(s) 5
MseI TTAA 7 cut(s) 12, 183, 372, 444, 536, 747, 1008
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 2 cut(s) 11, 1007
MspI CCGG 1 cut(s) 485
MspR9I CCNGG 2 cut(s) 7, 549
Mva1269I GAATGC 2 cut(s) 327, 543
MvaI CCWGG 2 cut(s) 7, 549
MvnI CGCG 1 cut(s) 282
NdeII GATC 9 cut(s) 33, 71, 322, 433, 793, 814, 874, 1017, 1040
NlaIII CATG 3 cut(s) 269, 498, 884
NlaIV GGNNCC 2 cut(s) 932, 1003
NmeAIII GCCGAG 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 2 cut(s) 269, 884
PciI ACATGT 2 cut(s) 265, 880
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 429
PctI GAATGC 2 cut(s) 327, 543
PdmI GAANNNNTTC 1 cut(s) 929
PfeI GAWTC 1 cut(s) 529
PflMI CCANNNNNTGG 1 cut(s) 604
PfoI TCCNGGA 1 cut(s) 547
PkrI GCNGC 2 cut(s) 288, 889
Ple19I CGATCG 1 cut(s) 325
PleI GAGTC 2 cut(s) 85, 815
PpsI GAGTC 2 cut(s) 85, 815
PscI ACATGT 2 cut(s) 265, 880
PsiI TTATAA 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 246
Psp1406I AACGTT 1 cut(s) 423
Psp6I CCWGG 2 cut(s) 5, 547
PspGI CCWGG 2 cut(s) 5, 547
PspN4I GGNNCC 2 cut(s) 932, 1003
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 874
PvuI CGATCG 1 cut(s) 325
RsaI GTAC 3 cut(s) 20, 710, 1003
RsaNI GTAC 3 cut(s) 19, 709, 1002
SacI GAGCTC 1 cut(s) 246
SaqAI TTAA 7 cut(s) 12, 183, 372, 444, 536, 747, 1008
SatI GCNGC 2 cut(s) 287, 888
Sau3AI GATC 9 cut(s) 33, 71, 322, 433, 793, 814, 874, 1017, 1040
SchI GAGTC 2 cut(s) 86, 815
ScrFI CCNGG 2 cut(s) 7, 549
SduI GDGCHC 2 cut(s) 246, 945
SfaNI GCATC 1 cut(s) 425
SfcI CTRYAG 1 cut(s) 81
SmlI CTYRAG 3 cut(s) 11, 974, 1007
SmoI CTYRAG 3 cut(s) 11, 974, 1007
SsiI CCGC 1 cut(s) 910
SspMI CTAG 5 cut(s) 177, 201, 381, 687, 797
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 2 cut(s) 5, 547
TaaI ACNGT 4 cut(s) 209, 569, 602, 680
TaiI ACGT 4 cut(s) 166, 394, 426, 714
TaqI TCGA 1 cut(s) 432
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 1 cut(s) 529
Tru1I TTAA 7 cut(s) 12, 183, 372, 444, 536, 747, 1008
Tru9I TTAA 7 cut(s) 12, 183, 372, 444, 536, 747, 1008
TscAI CASTG 2 cut(s) 103, 811
TseI GCWGC 2 cut(s) 286, 887
TspDTI ATGAA 7 cut(s) 138, 276, 302, 668, 752, 777, 884
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 2 cut(s) 103, 811
Van91I CCANNNNNTGG 1 cut(s) 604
Vha464I CTTAAG 2 cut(s) 11, 1007
XapI RAATTY 5 cut(s) 87, 140, 345, 553, 984
XceI RCATGY 2 cut(s) 269, 884
XmiI GTMKAC 1 cut(s) 675
XmnI GAANNNNTTC 1 cut(s) 929
XspI CTAG 5 cut(s) 177, 201, 381, 687, 797
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.