Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001814.1

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Reverse (-)

182883 .. 184832

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001814.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atgaactttgagcatcccagttcgagtgattgccgatacacagaggtccaatctgctgatcaggactcagctgaaccacaacaggaagagagggtcagttatggggatgaaaattttactgccaaaagccatgttgggaaaaattttgcagaattgactgcggaggatgtagaaggaagagaattcgccactctggatgatgccgaaatttggtatagaatatatgcaactgcacttggttttatgacaagattgcagagggttactagagggattggaggcaggataacgaggcgaagattggtgtgtaataaagaaggtaaaagagaagcaaagtggctgcaaaaagaggaccgtgttcgtaatgctaagcaagagaaccgatgcaactgcctagcagcatgctttagcacctctagggcagatgactacacggtgaaaagcaatggggggtttgagtttgtgggagacactgagaaggatcttttcaacaagatagaggcagagccaagggccaaattgtttaatcagggggaagaaactgcaccgatagtgggggtgagtgacattacaatgccacaattagtagggtttggggatgagtatagatgcgatcacgttgacataccatggggagtgacttatagctacgtatcattgtcaccacatgttaaagcgattgctggtctgacatcaatagcaacagagcagtcgctaaaggcgcgtgacgagattttgtgcctgaagagggacagtgtgaaggttccatctcaaacaggagatgaaaatacgagctggcactcaagacaaaggaagctgaagctgcggtgtgctgaagagggaattagtgatatgaacatttcttttgttattttgataaatataggtacagaaccatcgaagaggttggcgggaattctaaaatgcagattacagaggataactgcaatagaggtcaatctccagagggtggtgctgattttcaacttttatgctcactgggtgggtggaaaagtggctttgccccagacaaaggtatggaatttgattcaagtaagcgcaagaggcgataacgacttgcaaacagacaatattaccgataatgacgaggttggcttccgagcaaagttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

377

Amino Acids

42.56

Weight (kDa)

5.99

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1132
AccB7I	CCANNNNNTGG	1 cut(s)	970
AccII	CGCG	1 cut(s)	724
AciI	CCGC	3 cut(s)	161, 826, 911
AclWI	GGATC	1 cut(s)	489
AcsI	RAATTY	6 cut(s)	112, 142, 182, 207, 915, 1042
AcuI	CTGAAG	3 cut(s)	764, 839, 855
AdeI	CACNNNGTG	1 cut(s)	1003
AfaI	GTAC	1 cut(s)	889
AfiI	CCNNNNNNNGG	5 cut(s)	210, 554, 748, 970, 1033
AflIII	ACRYGT	1 cut(s)	667
AgsI	TTSAA	3 cut(s)	490, 985, 1052
AluBI	AGCT	5 cut(s)	71, 648, 795, 817, 823
AluI	AGCT	5 cut(s)	71, 648, 795, 817, 823
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	1 cut(s)	489
AoxI	GGCC	1 cut(s)	513
ApeKI	GCWGC	3 cut(s)	340, 398, 823
ApoI	RAATTY	6 cut(s)	112, 142, 182, 207, 915, 1042
AspLEI	GCGC	2 cut(s)	724, 1061
AspS9I	GGNCC	3 cut(s)	46, 352, 513
AsuHPI	GGTGA	3 cut(s)	448, 571, 654
AvaII	GGWCC	2 cut(s)	46, 352
BbvI	GCAGC	3 cut(s)	327, 410, 810
BccI	CCATC	2 cut(s)	775, 904
BcgI	CGANNNNNNTGC	2 cut(s)	372, 406
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	3 cut(s)	267, 395, 417
BisI	GCNGC	3 cut(s)	341, 399, 824
BlpI	GCTNAGC	1 cut(s)	369
BlsI	GCNGC	3 cut(s)	342, 400, 825
Bme18I	GGWCC	2 cut(s)	46, 352
BmgT120I	GGNCC	3 cut(s)	46, 352, 513
BmiI	GGNNCC	1 cut(s)	765
BmrI	ACTGGG	2 cut(s)	12, 1009
BmsI	GCATC	4 cut(s)	22, 190, 374, 599
BmuI	ACTGGG	2 cut(s)	12, 1009
BpmI	CTGGAG	1 cut(s)	947
Bpu1102I	GCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	787
BsaAI	YACGTR	1 cut(s)	652
BsaJI	CCNNGG	2 cut(s)	509, 629
Bsc4I	CCNNNNNNNGG	5 cut(s)	210, 554, 748, 970, 1033
Bse1I	ACTGG	2 cut(s)	18, 1004
Bse3DI	GCAATG	1 cut(s)	451
BseDI	CCNNGG	2 cut(s)	509, 629
BseGI	GGATG	5 cut(s)	13, 112, 172, 202, 604
BseLI	CCNNNNNNNGG	5 cut(s)	210, 554, 748, 970, 1033
BseMI	GCAATG	1 cut(s)	451
BseMII	CTCAG	2 cut(s)	81, 465
BseNI	ACTGG	2 cut(s)	18, 1004
BseXI	GCAGC	3 cut(s)	327, 410, 810
BsgI	GTGCAG	2 cut(s)	216, 528
Bsh1236I	CGCG	1 cut(s)	724
BshFI	GGCC	1 cut(s)	515
BslFI	GGGAC	1 cut(s)	764
BslI	CCNNNNNNNGG	5 cut(s)	210, 554, 748, 970, 1033
BsmAI	GTCTC	1 cut(s)	462
BsmFI	GGGAC	1 cut(s)	764
BsnI	GGCC	1 cut(s)	515
Bsp143I	GATC	3 cut(s)	58, 481, 613
Bsp1720I	GCTNAGC	1 cut(s)	369
Bsp19I	CCATGG	1 cut(s)	629
BspACI	CCGC	3 cut(s)	161, 826, 911
BspANI	GGCC	1 cut(s)	515
BspCNI	CTCAG	2 cut(s)	80, 466
BspFNI	CGCG	1 cut(s)	724
BspLI	GGNNCC	1 cut(s)	765
BspPI	GGATC	1 cut(s)	489
BsrDI	GCAATG	1 cut(s)	451
BsrI	ACTGG	2 cut(s)	18, 1004
BssECI	CCNNGG	2 cut(s)	509, 629
BssMI	GATC	3 cut(s)	58, 481, 613
BssT1I	CCWWGG	2 cut(s)	509, 629
Bst4CI	ACNGT	3 cut(s)	356, 436, 755
Bst6I	CTCTTC	5 cut(s)	81, 172, 740, 831, 896
BstBAI	YACGTR	1 cut(s)	652
BstC8I	GCNNGC	2 cut(s)	403, 797
BstDEI	CTNAG	3 cut(s)	67, 369, 474
BstDSI	CCRYGG	1 cut(s)	629
BstF5I	GGATG	5 cut(s)	13, 112, 172, 202, 604
BstFNI	CGCG	1 cut(s)	724
BstHHI	GCGC	2 cut(s)	724, 1061
BstKTI	GATC	3 cut(s)	61, 484, 616
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	3 cut(s)	58, 481, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	721, 823, 1065
BstNSI	RCATGY	2 cut(s)	405, 671
BstSNI	TACGTA	1 cut(s)	652
BstUI	CGCG	1 cut(s)	724
BstV1I	GCAGC	3 cut(s)	327, 410, 810
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuRI	GGCC	1 cut(s)	515
BtgI	CCRYGG	1 cut(s)	629
BtsCI	GGATG	5 cut(s)	13, 112, 172, 202, 604
BtsIMutI	CAGTG	3 cut(s)	471, 760, 997
Cac8I	GCNNGC	2 cut(s)	403, 797
CfoI	GCGC	2 cut(s)	724, 1061
Cfr13I	GGNCC	3 cut(s)	46, 352, 513
Csp6I	GTAC	1 cut(s)	888
CviAII	CATG	4 cut(s)	131, 402, 630, 668
CviQI	GTAC	1 cut(s)	888
DdeI	CTNAG	3 cut(s)	67, 369, 474
DpnI	GATC	3 cut(s)	60, 483, 615
DpnII	GATC	3 cut(s)	58, 481, 613
DraIII	CACNNNGTG	1 cut(s)	1003
Eam1104I	CTCTTC	5 cut(s)	81, 172, 740, 831, 896
EarI	CTCTTC	5 cut(s)	81, 172, 740, 831, 896
Eco105I	TACGTA	1 cut(s)	652
Eco130I	CCWWGG	2 cut(s)	509, 629
Eco47I	GGWCC	2 cut(s)	46, 352
Eco57I	CTGAAG	3 cut(s)	764, 839, 855
EcoRI	GAATTC	2 cut(s)	182, 915
EcoT14I	CCWWGG	2 cut(s)	509, 629
ErhI	CCWWGG	2 cut(s)	509, 629
FaeI	CATG	4 cut(s)	134, 405, 633, 671
FaqI	GGGAC	1 cut(s)	764
FatI	CATG	4 cut(s)	130, 401, 629, 667
FauI	CCCGC	1 cut(s)	904
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	3 cut(s)	341, 399, 824
FokI	GGATG	4 cut(s)	119, 179, 209, 611
Fsp4HI	GCNGC	3 cut(s)	341, 399, 824
FspBI	CTAG	3 cut(s)	267, 395, 417
GlaI	GCGC	2 cut(s)	723, 1060
GluI	GCNGC	3 cut(s)	341, 399, 824
GsuI	CTGGAG	1 cut(s)	947
HaeIII	GGCC	1 cut(s)	515
HhaI	GCGC	2 cut(s)	724, 1061
Hin1II	CATG	4 cut(s)	134, 405, 633, 671
Hin6I	GCGC	2 cut(s)	722, 1059
HinP1I	GCGC	2 cut(s)	722, 1059
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HinfI	GANTC	2 cut(s)	65, 1048
HphI	GGTGA	3 cut(s)	448, 571, 654
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	2 cut(s)	690, 1121
Hpy188III	TCNNGA	4 cut(s)	62, 194, 804, 964
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	4 cut(s)	167, 311, 472, 754
HpyCH4III	ACNGT	3 cut(s)	356, 436, 755
HpyCH4IV	ACGT	2 cut(s)	618, 651
HpyF10VI	GCNNNNNNNGC	3 cut(s)	721, 823, 1065
HpyF3I	CTNAG	3 cut(s)	67, 369, 474
HpySE526I	ACGT	2 cut(s)	618, 651
Hsp92II	CATG	4 cut(s)	134, 405, 633, 671
HspAI	GCGC	2 cut(s)	722, 1059
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	58, 481, 613
Lsp1109I	GCAGC	3 cut(s)	327, 410, 810
LweI	GCATC	4 cut(s)	22, 190, 374, 599
MaeI	CTAG	3 cut(s)	267, 395, 417
MaeII	ACGT	2 cut(s)	618, 651
MaeIII	GTNAC	5 cut(s)	262, 563, 637, 660, 725
MalI	GATC	3 cut(s)	60, 483, 615
MboI	GATC	3 cut(s)	58, 481, 613
MboII	GAAGA	7 cut(s)	98, 189, 309, 548, 757, 848, 913
MflI	RGATCY	1 cut(s)	481
MlyI	GAGTC	1 cut(s)	59
MseI	TTAA	2 cut(s)	525, 672
MslI	CAYNNNNRTG	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	724
MwoI	GCNNNNNNNGC	3 cut(s)	721, 823, 1065
NcoI	CCATGG	1 cut(s)	629
NdeII	GATC	3 cut(s)	58, 481, 613
NlaIII	CATG	4 cut(s)	134, 405, 633, 671
NlaIV	GGNNCC	1 cut(s)	765
NmuCI	GTSAC	4 cut(s)	563, 637, 660, 725
NspI	RCATGY	2 cut(s)	405, 671
PaeI	GCATGC	1 cut(s)	405
PciI	ACATGT	1 cut(s)	667
PfeI	GAWTC	1 cut(s)	1048
PflMI	CCANNNNNTGG	1 cut(s)	970
PkrI	GCNGC	3 cut(s)	342, 400, 825
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	652
PscI	ACATGT	1 cut(s)	667
PsiI	TTATAA	1 cut(s)	1132
PspN4I	GGNNCC	1 cut(s)	765
PspPI	GGNCC	3 cut(s)	46, 352, 513
PsuI	RGATCY	1 cut(s)	481
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	1 cut(s)	889
RsaNI	GTAC	1 cut(s)	888
RseI	CAYNNNNRTG	1 cut(s)	572
SaqAI	TTAA	2 cut(s)	525, 672
SatI	GCNGC	3 cut(s)	341, 399, 824
Sau3AI	GATC	3 cut(s)	58, 481, 613
Sau96I	GGNCC	3 cut(s)	46, 352, 513
SchI	GAGTC	1 cut(s)	59
SfaNI	GCATC	4 cut(s)	22, 190, 374, 599
SinI	GGWCC	2 cut(s)	46, 352
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	802
SmoI	CTYRAG	1 cut(s)	802
SnaBI	TACGTA	1 cut(s)	652
SphI	GCATGC	1 cut(s)	405
SsiI	CCGC	3 cut(s)	161, 826, 911
SspI	AATATT	1 cut(s)	1093
SspMI	CTAG	3 cut(s)	267, 395, 417
StyI	CCWWGG	2 cut(s)	509, 629
TaaI	ACNGT	3 cut(s)	356, 436, 755
TaiI	ACGT	2 cut(s)	621, 654
TaqI	TCGA	2 cut(s)	23, 899
TfiI	GAWTC	1 cut(s)	1048
Tru1I	TTAA	2 cut(s)	525, 672
Tru9I	TTAA	2 cut(s)	525, 672
TscAI	CASTG	3 cut(s)	478, 760, 1004
TseFI	GTSAC	4 cut(s)	563, 637, 660, 725
TseI	GCWGC	3 cut(s)	340, 398, 823
Tsp45I	GTSAC	4 cut(s)	563, 637, 660, 725
TspDTI	ATGAA	4 cut(s)	17, 123, 798, 869
TspRI	CASTG	3 cut(s)	478, 760, 1004
Van91I	CCANNNNNTGG	1 cut(s)	970
VpaK11BI	GGWCC	2 cut(s)	46, 352
XapI	RAATTY	6 cut(s)	112, 142, 182, 207, 915, 1042
XceI	RCATGY	2 cut(s)	405, 671
XspI	CTAG	3 cut(s)	267, 395, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.