Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Forward (+)

32861887 .. 32865579

Gene Structure 3693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG274900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGAACTTTGAGCATCCCAGTTCGAGTGATTGCCGATACACAGAGGTCCAATCTGCTGATCAGGACTCAGCTGAACCACAACAGGAAGAGAAGGCCAGTTATGGGGATGAGAATTTTACTGCCAAAAGCCATGTTGGGAAAAGTTTTGCAGAATTGACTGCGGAGGATGTAGAAGGAAGAGAATTCGCCACTCTGGATGATGCCGAAAATTGGTATAGAATGTATGCAACTGCACTTGGTTTTATGACAAGATTGCAGAGGGTTACTAGAGGGATTGGAGGCAGGATAACGAGGCGAAGATTGGTTTGTAATAAAGAAGGTAAAAGAGAAGCAAAGTGGCTGCAAAAAGAGGACCGCGTTCGTAATGCAAAGCAAGAGACCCGATGCAACTGCCTAGCAGCATGCTGTATCCATTTCAATAAGAATAGTCAAACATACATTATCACTGAATTCAAAACCAAACACAATCACGATCTTGCCATGCATTCCAATGGTTCGGTTACTAATTCAGACATGGGACACCTCGGTGCAAGGCGCACTTGTTCAGTCAGCACCTCTAGGGCAGATGACTACATGGTGAAAAGCAATGGGGGGTTTGAGTTTGTGGGAGACACTGAGAAGGATCTTTTCAACAAGATAGAGGCAGAGGCAAGGGCCAAATTGTTTAATCAGGGGGAAGAAACTGCATCAATAGTGGAGGTGAGTGACATTACAATGCCACCTTGGAGCATTAACCTAGTAGGGTTCGGCGATGAGTATAGATGCGATCACGTTGACATACCACGGGGAGTGACTATAGCTATGTATCATTGTCACCACATGTTAAAGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

277

Amino Acids

31.49

Weight (kDa)

6.14

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	71 - 160	1.5e-16	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	357
AciI	CCGC	3 cut(s)	161, 355, 829
AclWI	GGATC	1 cut(s)	630
AcsI	RAATTY	3 cut(s)	112, 182, 449
AfiI	CCNNNNNNNGG	2 cut(s)	102, 210
AflIII	ACRYGT	1 cut(s)	819
AgsI	TTSAA	3 cut(s)	418, 454, 631
AleI	CACNNNNGTG	1 cut(s)	525
AluBI	AGCT	2 cut(s)	71, 800
AluI	AGCT	2 cut(s)	71, 800
Alw26I	GTCTC	2 cut(s)	371, 603
AlwI	GGATC	1 cut(s)	630
AoxI	GGCC	2 cut(s)	93, 654
ApeKI	GCWGC	2 cut(s)	340, 398
ApoI	RAATTY	3 cut(s)	112, 182, 449
AspLEI	GCGC	1 cut(s)	537
AspS9I	GGNCC	3 cut(s)	46, 352, 654
AsuHPI	GGTGA	3 cut(s)	589, 712, 806
AvaII	GGWCC	2 cut(s)	46, 352
BbvI	GCAGC	2 cut(s)	327, 410
BcgI	CGANNNNNNTGC	2 cut(s)	372, 406
BciVI	GTATCC	1 cut(s)	419
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	371, 603
BfaI	CTAG	4 cut(s)	267, 395, 558, 737
BfmI	CTRYAG	1 cut(s)	795
BfuI	GTATCC	1 cut(s)	419
BisI	GCNGC	2 cut(s)	341, 399
BlsI	GCNGC	2 cut(s)	342, 400
Bme18I	GGWCC	2 cut(s)	46, 352
BmgT120I	GGNCC	3 cut(s)	46, 352, 654
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	5 cut(s)	22, 190, 374, 695, 752
BmuI	ACTGGG	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	3 cut(s)	523, 722, 782
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 210
Bse1I	ACTGG	2 cut(s)	18, 96
Bse3DI	GCAATG	1 cut(s)	592
BseDI	CCNNGG	3 cut(s)	523, 722, 782
BseGI	GGATG	4 cut(s)	13, 112, 172, 202
BseLI	CCNNNNNNNGG	2 cut(s)	102, 210
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	2 cut(s)	81, 606
BseNI	ACTGG	2 cut(s)	18, 96
BseXI	GCAGC	2 cut(s)	327, 410
BsgI	GTGCAG	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	357
BshFI	GGCC	2 cut(s)	95, 656
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	2 cut(s)	102, 210
BsmAI	GTCTC	2 cut(s)	371, 603
BsmFI	GGGAC	1 cut(s)	531
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	2 cut(s)	95, 656
Bso31I	GGTCTC	1 cut(s)	371
Bsp143I	GATC	4 cut(s)	58, 472, 622, 766
BspACI	CCGC	3 cut(s)	161, 355, 829
BspANI	GGCC	2 cut(s)	95, 656
BspCNI	CTCAG	2 cut(s)	80, 607
BspFNI	CGCG	1 cut(s)	357
BspPI	GGATC	1 cut(s)	630
BspTNI	GGTCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	592
BsrI	ACTGG	2 cut(s)	18, 96
BssECI	CCNNGG	3 cut(s)	523, 722, 782
BssMI	GATC	4 cut(s)	58, 472, 622, 766
BssT1I	CCWWGG	1 cut(s)	722
Bst6I	CTCTTC	2 cut(s)	81, 172
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	2 cut(s)	67, 615
BstDSI	CCRYGG	1 cut(s)	782
BstF5I	GGATG	4 cut(s)	13, 112, 172, 202
BstFNI	CGCG	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	4 cut(s)	61, 475, 625, 769
BstMAI	GTCTC	2 cut(s)	371, 603
BstMBI	GATC	4 cut(s)	58, 472, 622, 766
BstNSI	RCATGY	2 cut(s)	405, 823
BstSFI	CTRYAG	1 cut(s)	795
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	327, 410
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuI	GTATCC	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	95, 656
BtgI	CCRYGG	1 cut(s)	782
BtgZI	GCGATG	1 cut(s)	765
BtsCI	GGATG	4 cut(s)	13, 112, 172, 202
BtsIMutI	CAGTG	2 cut(s)	444, 612
Cac8I	GCNNGC	1 cut(s)	403
CfoI	GCGC	1 cut(s)	537
Cfr13I	GGNCC	3 cut(s)	46, 352, 654
CviAII	CATG	6 cut(s)	131, 402, 481, 514, 574, 820
CviJI	RGCY	6 cut(s)	71, 95, 129, 340, 656, 800
CviKI_1	RGCY	6 cut(s)	71, 95, 129, 340, 656, 800
DdeI	CTNAG	2 cut(s)	67, 615
DpnI	GATC	4 cut(s)	60, 474, 624, 768
DpnII	GATC	4 cut(s)	58, 472, 622, 766
Eam1104I	CTCTTC	2 cut(s)	81, 172
EarI	CTCTTC	2 cut(s)	81, 172
Eco130I	CCWWGG	1 cut(s)	722
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	2 cut(s)	46, 352
EcoRI	GAATTC	2 cut(s)	182, 449
EcoT14I	CCWWGG	1 cut(s)	722
EcoT22I	ATGCAT	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	722
FaeI	CATG	6 cut(s)	134, 405, 484, 517, 577, 823
FalI	AAGNNNNNCTT	2 cut(s)	523, 555
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	6 cut(s)	130, 401, 480, 513, 573, 819
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	2 cut(s)	341, 399
FokI	GGATG	3 cut(s)	119, 179, 209
Fsp4HI	GCNGC	2 cut(s)	341, 399
FspBI	CTAG	4 cut(s)	267, 395, 558, 737
GlaI	GCGC	1 cut(s)	536
GluI	GCNGC	2 cut(s)	341, 399
HaeIII	GGCC	2 cut(s)	95, 656
HhaI	GCGC	1 cut(s)	537
Hin1II	CATG	6 cut(s)	134, 405, 484, 517, 577, 823
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HinfI	GANTC	1 cut(s)	65
HphI	GGTGA	3 cut(s)	589, 712, 806
Hpy166II	GTNNAC	1 cut(s)	775
Hpy188I	TCNGA	1 cut(s)	511
Hpy188III	TCNNGA	3 cut(s)	62, 194, 470
Hpy8I	GTNNAC	1 cut(s)	775
HpyAV	CCTTC	4 cut(s)	85, 167, 311, 613
HpyCH4IV	ACGT	1 cut(s)	771
HpyF3I	CTNAG	2 cut(s)	67, 615
HpySE526I	ACGT	1 cut(s)	771
Hsp92II	CATG	6 cut(s)	134, 405, 484, 517, 577, 823
HspAI	GCGC	1 cut(s)	535
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	4 cut(s)	58, 472, 622, 766
LmnI	GCTCC	1 cut(s)	726
LpnPI	CCDG	7 cut(s)	31, 47, 68, 109, 179, 268, 656
Lsp1109I	GCAGC	2 cut(s)	327, 410
LweI	GCATC	5 cut(s)	22, 190, 374, 695, 752
MaeI	CTAG	4 cut(s)	267, 395, 558, 737
MaeII	ACGT	1 cut(s)	771
MaeIII	GTNAC	5 cut(s)	262, 499, 704, 790, 812
MalI	GATC	4 cut(s)	60, 474, 624, 768
MboI	GATC	4 cut(s)	58, 472, 622, 766
MboII	GAAGA	4 cut(s)	98, 189, 309, 689
MflI	RGATCY	1 cut(s)	622
MluCI	AATT	7 cut(s)	112, 152, 182, 208, 449, 505, 659
MlyI	GAGTC	1 cut(s)	59
Mph1103I	ATGCAT	1 cut(s)	486
MseI	TTAA	3 cut(s)	666, 732, 824
MslI	CAYNNNNRTG	3 cut(s)	489, 525, 713
MspA1I	CMGCKG	1 cut(s)	71
Mva1269I	GAATGC	1 cut(s)	484
MvnI	CGCG	1 cut(s)	357
NdeII	GATC	4 cut(s)	58, 472, 622, 766
NlaIII	CATG	6 cut(s)	134, 405, 484, 517, 577, 823
NmuCI	GTSAC	3 cut(s)	704, 790, 812
NsiI	ATGCAT	1 cut(s)	486
NspI	RCATGY	2 cut(s)	405, 823
OliI	CACNNNNGTG	1 cut(s)	525
PaeI	GCATGC	1 cut(s)	405
PciI	ACATGT	1 cut(s)	819
PctI	GAATGC	1 cut(s)	484
PkrI	GCNGC	2 cut(s)	342, 400
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PscI	ACATGT	1 cut(s)	819
PspPI	GGNCC	3 cut(s)	46, 352, 654
PsuI	RGATCY	1 cut(s)	622
PvuII	CAGCTG	1 cut(s)	71
RseI	CAYNNNNRTG	3 cut(s)	489, 525, 713
SaqAI	TTAA	3 cut(s)	666, 732, 824
SatI	GCNGC	2 cut(s)	341, 399
Sau3AI	GATC	4 cut(s)	58, 472, 622, 766
Sau96I	GGNCC	3 cut(s)	46, 352, 654
SchI	GAGTC	1 cut(s)	59
SfaNI	GCATC	5 cut(s)	22, 190, 374, 695, 752
SfcI	CTRYAG	1 cut(s)	795
SinI	GGWCC	2 cut(s)	46, 352
SmiMI	CAYNNNNRTG	3 cut(s)	489, 525, 713
SphI	GCATGC	1 cut(s)	405
Sse9I	AATT	7 cut(s)	112, 152, 182, 208, 449, 505, 659
SsiI	CCGC	3 cut(s)	161, 355, 829
SspMI	CTAG	4 cut(s)	267, 395, 558, 737
StyI	CCWWGG	1 cut(s)	722
TaiI	ACGT	1 cut(s)	774
TaqI	TCGA	1 cut(s)	23
TasI	AATT	7 cut(s)	112, 152, 182, 208, 449, 505, 659
Tru1I	TTAA	3 cut(s)	666, 732, 824
Tru9I	TTAA	3 cut(s)	666, 732, 824
TscAI	CASTG	2 cut(s)	451, 619
TseFI	GTSAC	3 cut(s)	704, 790, 812
TseI	GCWGC	2 cut(s)	340, 398
Tsp45I	GTSAC	3 cut(s)	704, 790, 812
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	451, 619
VpaK11BI	GGWCC	2 cut(s)	46, 352
XapI	RAATTY	3 cut(s)	112, 182, 449
XceI	RCATGY	2 cut(s)	405, 823
XspI	CTAG	4 cut(s)	267, 395, 558, 737
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.