Rroxscaffold_2G00124860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001462
Physical Location & Seq
Reverse (-)
59345945 .. 59350742
4798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00124860.1

Sequence Viewer

Length: 1113 bp
ATGCCTTCCGATTTGTTCTTGTTGGATCTCGGATTCGGGTTTGGCTCCGACGAACAAGCTCACATTGATTGGCATGTTGATGCTTTAGAGTCGTGCTGTAGCCTTGTAAAAGTTGTTGAATACCTAAATTTGTTCTGGTGTCCACATTTCCCCTGGACTATTATCTCATATTCTACACTTGTTGAACTTGGCTTGGTAGCCTTAGTATTAGACACCCACCACTCAAATGTTGCAGAAGAACTTGGCTTTTCAGACATCTTGGTTTATCCAAGCATGAACTTTGAGCATACCAGTTCGAGTGATTGCCGATACACAGAGGTCCAATCTGCTGATCAGGACTCAGCTGAACCACAACAGGAAGAGAGGGTCAGTTATGGGGAAAGCCGTGTTGGGAAAAGTTTTGCAGAATTGACTGTGGAGGATGTAGAAGGAAGAGAATTCGCCACTCTGGATGATGCCGAAAATTGGTATAGAATGTATGCAACTGCACTTGGTTTTATTGCAAGATTGCAGAGGGTTACTAGAGGGATTGGAGGCAGGATAACGAGGCGAAGATTGGTTTGTAATAAAGAAGGTAAAAGAGAAGGAAAGTGGCTGCAAAAAGAGGACCGCGTTCGTAATGCTAAGCAAGAGACCCAATGCAACTGCCTAGCAGCATGCTTCAGCACCTCTAGGGCAGATGACTACACTGTGAAAGGAAATGGGGGGTTTGAGTTTGTGGGAGACACTGAGAAGGATCTTTTCAACAAGGTAGAGGCAGAGCCAAGGGCCAAATTGTTTAATCAGGGGGAAGAAACTGCACCAATAGTGGAGGTGAGTGACATTACAATGCCACCTTGGAGCATTAACCTAGTATGGTTCGGCGATGAGTATAGATGCGATCACGTTGACATACCCCAGGGAGTGACTTATAGCTATGTATCATTGTCACCACATGTTCAAGCGGTTAGTGCCGACACAGTGTCAACATTACTTCGGCAGATTGCTGGTCTGACATCAATAGCAACAGAGCAGTCGCTAAAGGCGCGTGACGAGATTTTGCACCTGAAGAGGGACAGTGAGCTGGCACTCAAGACAAAGGAAGCTGAAGTTGTGGTGCTGAGAGGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

370

Amino Acids

41.64

Weight (kDa)

4.83

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 156 - 220 4e-08 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 612, 1027
AciI CCGC 2 cut(s) 610, 944
AclWI GGATC 2 cut(s) 33, 744
AcsI RAATTY 2 cut(s) 127, 437
AcuI CTGAAG 3 cut(s) 646, 1067, 1107
AfiI CCNNNNNNNGG 2 cut(s) 465, 1051
AflIII ACRYGT 1 cut(s) 934
AgsI TTSAA 4 cut(s) 119, 185, 745, 941
AhdI GACNNNNNGTC 1 cut(s) 961
AjnI CCWGG 2 cut(s) 152, 897
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AluBI AGCT 5 cut(s) 59, 344, 915, 1063, 1085
AluI AGCT 5 cut(s) 59, 344, 915, 1063, 1085
Alw26I GTCTC 2 cut(s) 626, 717
AlwI GGATC 2 cut(s) 33, 744
AoxI GGCC 1 cut(s) 768
ApeKI GCWGC 2 cut(s) 595, 653
ApoI RAATTY 2 cut(s) 127, 437
AspLEI GCGC 1 cut(s) 1027
AspS9I GGNCC 3 cut(s) 319, 607, 768
AsuHPI GGTGA 2 cut(s) 826, 921
AvaII GGWCC 2 cut(s) 319, 607
BbvI GCAGC 2 cut(s) 582, 665
BceAI ACGGC 1 cut(s) 369
BciT130I CCWGG 2 cut(s) 154, 899
BclI TGATCA 1 cut(s) 331
BcoDI GTCTC 2 cut(s) 626, 717
BfaI CTAG 4 cut(s) 522, 650, 672, 851
BfmI CTRYAG 1 cut(s) 97
BisI GCNGC 2 cut(s) 596, 654
BlpI GCTNAGC 1 cut(s) 624
BlsI GCNGC 2 cut(s) 597, 655
Bme1390I CCNGG 2 cut(s) 154, 899
Bme18I GGWCC 2 cut(s) 319, 607
BmeRI GACNNNNNGTC 1 cut(s) 961
BmgT120I GGNCC 3 cut(s) 319, 607, 768
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 154, 899
BmsI GCATC 3 cut(s) 70, 445, 866
Bpu1102I GCTNAGC 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 1055
BsaI GGTCTC 1 cut(s) 626
BsaJI CCNNGG 5 cut(s) 152, 764, 836, 897, 898
Bsc4I CCNNNNNNNGG 2 cut(s) 465, 1051
Bse1I ACTGG 1 cut(s) 291
BseBI CCWGG 2 cut(s) 154, 899
BseDI CCNNGG 5 cut(s) 152, 764, 836, 897, 898
BseGI GGATG 2 cut(s) 427, 457
BseLI CCNNNNNNNGG 2 cut(s) 465, 1051
BseMII CTCAG 3 cut(s) 354, 720, 1091
BseNI ACTGG 1 cut(s) 291
BseXI GCAGC 2 cut(s) 582, 665
BsgI GTGCAG 2 cut(s) 471, 783
Bsh1236I CGCG 2 cut(s) 612, 1027
BshFI GGCC 1 cut(s) 770
BslFI GGGAC 1 cut(s) 1067
BslI CCNNNNNNNGG 2 cut(s) 465, 1051
BsmAI GTCTC 2 cut(s) 626, 717
BsmFI GGGAC 1 cut(s) 1067
BsnI GGCC 1 cut(s) 770
Bso31I GGTCTC 1 cut(s) 626
Bsp143I GATC 4 cut(s) 25, 331, 736, 880
Bsp1720I GCTNAGC 1 cut(s) 624
BspACI CCGC 2 cut(s) 610, 944
BspANI GGCC 1 cut(s) 770
BspCNI CTCAG 3 cut(s) 353, 721, 1092
BspFNI CGCG 2 cut(s) 612, 1027
BspLI GGNNCC 1 cut(s) 46
BspPI GGATC 2 cut(s) 33, 744
BspTNI GGTCTC 1 cut(s) 626
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 5 cut(s) 152, 764, 836, 897, 898
BssMI GATC 4 cut(s) 25, 331, 736, 880
BssT1I CCWWGG 2 cut(s) 764, 836
Bst2UI CCWGG 2 cut(s) 154, 899
Bst4CI ACNGT 4 cut(s) 415, 691, 961, 1058
Bst6I CTCTTC 3 cut(s) 354, 427, 1043
BstC8I GCNNGC 2 cut(s) 658, 1065
BstDEI CTNAG 5 cut(s) 202, 340, 624, 729, 1100
BstF5I GGATG 2 cut(s) 427, 457
BstFNI CGCG 2 cut(s) 612, 1027
BstHHI GCGC 1 cut(s) 1027
BstKTI GATC 4 cut(s) 28, 334, 739, 883
BstMAI GTCTC 2 cut(s) 626, 717
BstMBI GATC 4 cut(s) 25, 331, 736, 880
BstMWI GCNNNNNNNGC 2 cut(s) 950, 1024
BstNI CCWGG 2 cut(s) 154, 899
BstNSI RCATGY 3 cut(s) 77, 660, 938
BstSCI CCNGG 2 cut(s) 152, 897
BstSFI CTRYAG 1 cut(s) 97
BstUI CGCG 2 cut(s) 612, 1027
BstV1I GCAGC 2 cut(s) 582, 665
BstX2I RGATCY 2 cut(s) 25, 736
BstYI RGATCY 2 cut(s) 25, 736
BsuRI GGCC 1 cut(s) 770
BtgZI GCGATG 1 cut(s) 879
BtsCI GGATG 2 cut(s) 427, 457
BtsIMutI CAGTG 4 cut(s) 687, 726, 966, 1063
Cac8I GCNNGC 2 cut(s) 658, 1065
CfoI GCGC 1 cut(s) 1027
Cfr13I GGNCC 3 cut(s) 319, 607, 768
CviAII CATG 4 cut(s) 74, 274, 657, 935
DdeI CTNAG 5 cut(s) 202, 340, 624, 729, 1100
DpnI GATC 4 cut(s) 27, 333, 738, 882
DpnII GATC 4 cut(s) 25, 331, 736, 880
DriI GACNNNNNGTC 1 cut(s) 961
Eam1104I CTCTTC 3 cut(s) 354, 427, 1043
Eam1105I GACNNNNNGTC 1 cut(s) 961
EarI CTCTTC 3 cut(s) 354, 427, 1043
Eco130I CCWWGG 2 cut(s) 764, 836
Eco31I GGTCTC 1 cut(s) 626
Eco47I GGWCC 2 cut(s) 319, 607
Eco57I CTGAAG 3 cut(s) 646, 1067, 1107
EcoRI GAATTC 1 cut(s) 437
EcoRII CCWGG 2 cut(s) 152, 897
EcoT14I CCWWGG 2 cut(s) 764, 836
ErhI CCWWGG 2 cut(s) 764, 836
FaeI CATG 4 cut(s) 77, 277, 660, 938
FaqI GGGAC 1 cut(s) 1067
FatI CATG 4 cut(s) 73, 273, 656, 934
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 2 cut(s) 596, 654
FokI GGATG 2 cut(s) 434, 464
Fsp4HI GCNGC 2 cut(s) 596, 654
FspBI CTAG 4 cut(s) 522, 650, 672, 851
GlaI GCGC 1 cut(s) 1026
GluI GCNGC 2 cut(s) 596, 654
HaeIII GGCC 1 cut(s) 770
HhaI GCGC 1 cut(s) 1027
Hin1II CATG 4 cut(s) 77, 277, 660, 938
Hin6I GCGC 1 cut(s) 1025
HinP1I GCGC 1 cut(s) 1025
HincII GTYRAC 2 cut(s) 889, 966
HindII GTYRAC 2 cut(s) 889, 966
HinfI GANTC 3 cut(s) 33, 89, 338
HphI GGTGA 2 cut(s) 826, 921
Hpy166II GTNNAC 3 cut(s) 143, 889, 966
Hpy188I TCNGA 5 cut(s) 10, 32, 49, 253, 993
Hpy188III TCNNGA 3 cut(s) 335, 449, 1072
Hpy8I GTNNAC 3 cut(s) 143, 889, 966
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 5 cut(s) 15, 422, 566, 578, 727
HpyCH4III ACNGT 4 cut(s) 415, 691, 961, 1058
HpyCH4IV ACGT 1 cut(s) 885
HpyF10VI GCNNNNNNNGC 2 cut(s) 950, 1024
HpyF3I CTNAG 5 cut(s) 202, 340, 624, 729, 1100
HpySE526I ACGT 1 cut(s) 885
Hsp92II CATG 4 cut(s) 77, 277, 660, 938
HspAI GCGC 1 cut(s) 1025
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 4 cut(s) 25, 331, 736, 880
LmnI GCTCC 2 cut(s) 50, 840
Lsp1109I GCAGC 2 cut(s) 582, 665
LweI GCATC 3 cut(s) 70, 445, 866
MaeI CTAG 4 cut(s) 522, 650, 672, 851
MaeII ACGT 1 cut(s) 885
MaeIII GTNAC 5 cut(s) 517, 818, 904, 927, 1028
MalI GATC 4 cut(s) 27, 333, 738, 882
MboI GATC 4 cut(s) 25, 331, 736, 880
MboII GAAGA 6 cut(s) 248, 371, 444, 564, 803, 1060
MflI RGATCY 2 cut(s) 25, 736
MluCI AATT 6 cut(s) 127, 407, 437, 463, 773, 1108
MlyI GAGTC 2 cut(s) 98, 332
MmeI TCCRAC 1 cut(s) 72
MseI TTAA 2 cut(s) 780, 846
MslI CAYNNNNRTG 3 cut(s) 78, 225, 827
MspA1I CMGCKG 1 cut(s) 344
MspR9I CCNGG 2 cut(s) 154, 899
MvaI CCWGG 2 cut(s) 154, 899
MvnI CGCG 2 cut(s) 612, 1027
MwoI GCNNNNNNNGC 2 cut(s) 950, 1024
NdeII GATC 4 cut(s) 25, 331, 736, 880
NlaIII CATG 4 cut(s) 77, 277, 660, 938
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 4 cut(s) 818, 904, 927, 1028
NspI RCATGY 3 cut(s) 77, 660, 938
PaeI GCATGC 1 cut(s) 660
PasI CCCWGGG 1 cut(s) 898
PciI ACATGT 1 cut(s) 934
PfeI GAWTC 1 cut(s) 33
PkrI GCNGC 2 cut(s) 597, 655
PleI GAGTC 2 cut(s) 97, 332
PpsI GAGTC 2 cut(s) 97, 332
PscI ACATGT 1 cut(s) 934
Psp6I CCWGG 2 cut(s) 152, 897
PspGI CCWGG 2 cut(s) 152, 897
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 3 cut(s) 319, 607, 768
PsuI RGATCY 2 cut(s) 25, 736
PvuII CAGCTG 1 cut(s) 344
RseI CAYNNNNRTG 3 cut(s) 78, 225, 827
SaqAI TTAA 2 cut(s) 780, 846
SatI GCNGC 2 cut(s) 596, 654
Sau3AI GATC 4 cut(s) 25, 331, 736, 880
Sau96I GGNCC 3 cut(s) 319, 607, 768
SchI GAGTC 2 cut(s) 98, 332
ScrFI CCNGG 2 cut(s) 154, 899
SfaNI GCATC 3 cut(s) 70, 445, 866
SfcI CTRYAG 1 cut(s) 97
SinI GGWCC 2 cut(s) 319, 607
SmiMI CAYNNNNRTG 3 cut(s) 78, 225, 827
SmlI CTYRAG 1 cut(s) 1070
SmoI CTYRAG 1 cut(s) 1070
SphI GCATGC 1 cut(s) 660
Sse9I AATT 6 cut(s) 127, 407, 437, 463, 773, 1108
SsiI CCGC 2 cut(s) 610, 944
SspMI CTAG 4 cut(s) 522, 650, 672, 851
StyD4I CCNGG 2 cut(s) 152, 897
StyI CCWWGG 2 cut(s) 764, 836
TaaI ACNGT 4 cut(s) 415, 691, 961, 1058
TaiI ACGT 1 cut(s) 888
TaqI TCGA 1 cut(s) 296
TasI AATT 6 cut(s) 127, 407, 437, 463, 773, 1108
TfiI GAWTC 1 cut(s) 33
Tru1I TTAA 2 cut(s) 780, 846
Tru9I TTAA 2 cut(s) 780, 846
TscAI CASTG 4 cut(s) 694, 733, 966, 1063
TseFI GTSAC 4 cut(s) 818, 904, 927, 1028
TseI GCWGC 2 cut(s) 595, 653
Tsp45I GTSAC 4 cut(s) 818, 904, 927, 1028
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 4 cut(s) 694, 733, 966, 1063
VpaK11BI GGWCC 2 cut(s) 319, 607
XapI RAATTY 2 cut(s) 127, 437
XceI RCATGY 3 cut(s) 77, 660, 938
XcmI CCANNNNNNNNNTGG 1 cut(s) 150
XspI CTAG 4 cut(s) 522, 650, 672, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.