Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002831.1

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Forward (+)

145454 .. 147342

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002831.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgaactttgagcatcccagttcgagtgattgccgatacacagaggtccaatctgctgatcaggactcagctggaccaccacaggaagagagggtcagttatggggatgagaattttactgccaaaagccgtgttgggaaaagttttgctgaattgactgcggaggatgtagaaggaagagaattcgccactctggatgatgccgaaaattggtatagaatgtatgcaactgcacttggttttatgacaagattgcagagggttactagagggattggaggcaggataacgaggcgaagattggtttgtaataaagaagggaaaagggaagcaaagtggctgcaaaaagaggcccgtgttcgtaatgctaagcaagagacccgatgcaactgcctagcagcatgctgtatccatttcaataagaatagtcaaacatacatcatcactgaattcaaaaccgaacacaatcacgatcttgccatgtattccaatggttcggttactcatgcagacatgggacatcttggtgcaaggcgcacttgttcagtcagcacctctagggcagatgactacacggagctggcactcaagacaaaggaagctgaagctgcggtgctgaagagggaattagctgagtgtcagcgagagttggaattggtgaagtcggcagataaatataggtacagaaccatcgaagaggttggcgggaattctaaaaagcagattacagaggataactgcaataggggtcaatctcctgagggtggtgctgatattcaactgttatgctcaccgggtgggtggaaaagtggctttgccccagacaaagatatggaatttgattcaagtaagcgtaagaggcgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

288

Amino Acids

32.6

Weight (kDa)

7.99

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	161, 611, 705
AcsI	RAATTY	5 cut(s)	112, 182, 449, 709, 836
AcuI	CTGAAG	2 cut(s)	624, 638
AdeI	CACNNNGTG	1 cut(s)	797
AfaI	GTAC	1 cut(s)	683
AfiI	CCNNNNNNNGG	2 cut(s)	210, 764
AgsI	TTSAA	4 cut(s)	418, 454, 779, 846
AluBI	AGCT	5 cut(s)	71, 580, 602, 608, 632
AluI	AGCT	5 cut(s)	71, 580, 602, 608, 632
Alw26I	GTCTC	1 cut(s)	371
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	3 cut(s)	340, 398, 608
ApoI	RAATTY	5 cut(s)	112, 182, 449, 709, 836
AspLEI	GCGC	1 cut(s)	537
AspS9I	GGNCC	3 cut(s)	46, 74, 352
AsuC2I	CCSGG	1 cut(s)	795
AsuHPI	GGTGA	2 cut(s)	670, 783
AvaII	GGWCC	2 cut(s)	46, 74
AxyI	CCTNAGG	1 cut(s)	759
BbvI	GCAGC	3 cut(s)	327, 410, 595
BccI	CCATC	1 cut(s)	698
BceAI	ACGGC	1 cut(s)	114
BcgI	CGANNNNNNTGC	2 cut(s)	372, 406
BciVI	GTATCC	1 cut(s)	419
BclI	TGATCA	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	795
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	3 cut(s)	267, 395, 558
BfuI	GTATCC	1 cut(s)	419
BisI	GCNGC	3 cut(s)	341, 399, 609
BlpI	GCTNAGC	1 cut(s)	369
BlsI	GCNGC	3 cut(s)	342, 400, 610
Bme1390I	CCNGG	1 cut(s)	795
Bme18I	GGWCC	2 cut(s)	46, 74
BmgT120I	GGNCC	3 cut(s)	46, 74, 352
BmrFI	CCNGG	1 cut(s)	795
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	3 cut(s)	22, 190, 374
BmuI	ACTGGG	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	572
BpuMI	CCSGG	1 cut(s)	795
BsaI	GGTCTC	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 764
Bse1I	ACTGG	1 cut(s)	18
Bse21I	CCTNAGG	1 cut(s)	759
BseGI	GGATG	4 cut(s)	13, 112, 172, 202
BseLI	CCNNNNNNNGG	2 cut(s)	210, 764
BseMII	CTCAG	3 cut(s)	81, 624, 750
BseNI	ACTGG	1 cut(s)	18
BseXI	GCAGC	3 cut(s)	327, 410, 595
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	794
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	2 cut(s)	210, 764
BsmAI	GTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	531
BsnI	GGCC	1 cut(s)	353
Bso31I	GGTCTC	1 cut(s)	371
Bsp143I	GATC	2 cut(s)	58, 472
Bsp1720I	GCTNAGC	1 cut(s)	369
BspACI	CCGC	3 cut(s)	161, 611, 705
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	3 cut(s)	80, 625, 751
BspTNI	GGTCTC	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	58, 472
Bst4CI	ACNGT	1 cut(s)	783
Bst6I	CTCTTC	4 cut(s)	81, 172, 614, 690
BstC8I	GCNNGC	2 cut(s)	403, 582
BstDEI	CTNAG	4 cut(s)	67, 369, 633, 759
BstF5I	GGATG	4 cut(s)	13, 112, 172, 202
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	2 cut(s)	61, 475
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	2 cut(s)	58, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	608, 859
BstNSI	RCATGY	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	793
BstV1I	GCAGC	3 cut(s)	327, 410, 595
Bsu36I	CCTNAGG	1 cut(s)	759
BsuI	GTATCC	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	4 cut(s)	13, 112, 172, 202
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	2 cut(s)	403, 582
CfoI	GCGC	1 cut(s)	537
Cfr13I	GGNCC	3 cut(s)	46, 74, 352
Csp6I	GTAC	1 cut(s)	682
CviAII	CATG	4 cut(s)	402, 481, 506, 514
CviJI	RGCY	9 cut(s)	71, 129, 340, 353, 580, 602, 608, 632, 813
CviKI_1	RGCY	9 cut(s)	71, 129, 340, 353, 580, 602, 608, 632, 813
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	4 cut(s)	67, 369, 633, 759
DpnI	GATC	2 cut(s)	60, 474
DpnII	GATC	2 cut(s)	58, 472
DraIII	CACNNNGTG	1 cut(s)	797
Eam1104I	CTCTTC	4 cut(s)	81, 172, 614, 690
EarI	CTCTTC	4 cut(s)	81, 172, 614, 690
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	2 cut(s)	46, 74
Eco57I	CTGAAG	2 cut(s)	624, 638
Eco81I	CCTNAGG	1 cut(s)	759
EcoRI	GAATTC	3 cut(s)	182, 449, 709
FaeI	CATG	4 cut(s)	405, 484, 509, 517
FalI	AAGNNNNNCTT	2 cut(s)	523, 555
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	4 cut(s)	401, 480, 505, 513
FauI	CCCGC	1 cut(s)	698
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	3 cut(s)	341, 399, 609
FokI	GGATG	3 cut(s)	119, 179, 209
Fsp4HI	GCNGC	3 cut(s)	341, 399, 609
FspBI	CTAG	3 cut(s)	267, 395, 558
GlaI	GCGC	1 cut(s)	536
GluI	GCNGC	3 cut(s)	341, 399, 609
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	1 cut(s)	794
HhaI	GCGC	1 cut(s)	537
Hin1II	CATG	4 cut(s)	405, 484, 509, 517
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HinfI	GANTC	2 cut(s)	65, 842
HpaII	CCGG	1 cut(s)	794
HphI	GGTGA	2 cut(s)	670, 783
Hpy188III	TCNNGA	5 cut(s)	62, 194, 470, 589, 758
HpyAV	CCTTC	2 cut(s)	167, 311
HpyCH4III	ACNGT	1 cut(s)	783
HpyCH4V	TGCA	8 cut(s)	227, 233, 256, 343, 387, 509, 530, 741
HpyF10VI	GCNNNNNNNGC	2 cut(s)	608, 859
HpyF3I	CTNAG	4 cut(s)	67, 369, 633, 759
Hsp92II	CATG	4 cut(s)	405, 484, 509, 517
HspAI	GCGC	1 cut(s)	535
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	58, 472
LmnI	GCTCC	1 cut(s)	577
Lsp1109I	GCAGC	3 cut(s)	327, 410, 595
LweI	GCATC	3 cut(s)	22, 190, 374
MaeI	CTAG	3 cut(s)	267, 395, 558
MaeIII	GTNAC	2 cut(s)	262, 499
MalI	GATC	2 cut(s)	60, 474
MboI	GATC	2 cut(s)	58, 472
MboII	GAAGA	5 cut(s)	98, 189, 309, 631, 707
MluCI	AATT	9 cut(s)	112, 152, 182, 208, 449, 626, 653, 709, 836
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	630
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	794
MspR9I	CCNGG	1 cut(s)	795
MwoI	GCNNNNNNNGC	2 cut(s)	608, 859
NciI	CCSGG	1 cut(s)	795
NdeII	GATC	2 cut(s)	58, 472
NlaIII	CATG	4 cut(s)	405, 484, 509, 517
NspI	RCATGY	1 cut(s)	405
PaeI	GCATGC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	842
PkrI	GCNGC	3 cut(s)	342, 400, 610
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PspPI	GGNCC	3 cut(s)	46, 74, 352
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
RseI	CAYNNNNRTG	1 cut(s)	525
SatI	GCNGC	3 cut(s)	341, 399, 609
Sau3AI	GATC	2 cut(s)	58, 472
Sau96I	GGNCC	3 cut(s)	46, 74, 352
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	795
SetI	ASST	9 cut(s)	48, 73, 557, 582, 604, 610, 634, 683, 702
SfaNI	GCATC	3 cut(s)	22, 190, 374
SinI	GGWCC	2 cut(s)	46, 74
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
SphI	GCATGC	1 cut(s)	405
Sse9I	AATT	9 cut(s)	112, 152, 182, 208, 449, 626, 653, 709, 836
SsiI	CCGC	3 cut(s)	161, 611, 705
SspMI	CTAG	3 cut(s)	267, 395, 558
StyD4I	CCNGG	1 cut(s)	793
TaaI	ACNGT	1 cut(s)	783
TaqI	TCGA	2 cut(s)	23, 693
TasI	AATT	9 cut(s)	112, 152, 182, 208, 449, 626, 653, 709, 836
TfiI	GAWTC	1 cut(s)	842
TscAI	CASTG	1 cut(s)	451
TseI	GCWGC	3 cut(s)	340, 398, 608
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	590
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	2 cut(s)	46, 74
XapI	RAATTY	5 cut(s)	112, 182, 449, 709, 836
XceI	RCATGY	1 cut(s)	405
XspI	CTAG	3 cut(s)	267, 395, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.