Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001462

Physical Location & Seq

Genomic Coordinates Forward (+)

32141013 .. 32142160

Gene Structure 1148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40675.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAATATTGACCCGGAAATTGATGACGGTGGTCTCCGGTTCAGCGAGAAGAATTATTACCAGCAGACGGATTCAGACAGAGAAGATAGTGATATTGTGAATGTTGCGGAAGACTGTGATGACTACAAAGAGGAGGCAAAAAGCAATATTGAAAAGGGGGACAGCGGTAAGTGTGTGGAGGATAAAATTCGGATGGATTCGAATAAGTGTGTTGATTATTTGGAAGAGGGAGTAAAAGTAGCTGGTTTAAGAGGTGTATTTGAGACGGATTGGTTTTTACATTTGGAGGGGAAGAACATGAAGACACTTAAGTTAGAAGACATTGAAGATATATCTTTTAGAAACCTGGATGAAGCCGAGCAATTCTACTCGTATTATGGATTTATTATGGGGTTTAGCATAAGGAAGAATAAGATGGAAAAGGTAGTAGTGGATGGTGTTGAGGTGGTTGTTAGAAGGAGCTGGACCTGTTCTAAACAGGGGTATTCCAAACAGTTAAGAAATAATAAGCAACCTCCTTTTGAATCTGAGGAAGGAGGGAAGAGAAAGCGTAACGCTTTCAGTGACAAGTGTAAGGGGAAGAAGAAGGGTGTTTTTCGGGAAATAAAATACAGCAGAAGCGGATGCAAAGCGGTGTTATGGGTGAAGCTGAATAAGAAGTCCGGATTATATCATGTATCCAAATTTGTTACAGACCACAACCATGAGCTTGCACAAGTCTCAGAGCGGTATTTACTGCGTTCCAATAGGCATGTTCTGATTCAAGACATATATGAAGTGCAAGCGCTGAGAGAAGCACAAGTTTCCACAAGCGCAGCTTATGACTATCTACTAAAGCAATCAGGGGGGGCGGAGTTTGTGGGTTTCTTGCTGAAAGATTTGTATAACAGGTTGGATGCGGATAAAAAAATTAATAAACAACATGGTGATGCTGAAGCTGCCTTGAACTGGATGCGGTTAAAAGGGCAGGAGGATCCGTTATTTTTCGCTAGATATTCATACAACCACAACACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

339

Amino Acids

39.15

Weight (kDa)

6.69

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	121 - 238	2.5e-14	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04881 FvH4_4g08902 FvH4_4g10122 FvH4_4g10571 FvH4_5g29993 FvH4_6g40675 FvH4_7g03536
prunus_persica	Prupe.7G064500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118661 RchiOBHm_Chr2g0118731
rosa_laevigata	RLG00000018416
rosa_multiflora	Rmu_co8058120.1_g000001 Rmu_co8418271.1_g000001 Rmu_sc0001814.1_g000033 Rmu_sc0002091.1_g000004 Rmu_sc0002831.1_g000006 Rmu_sc0002831.1_g000036 Rmu_sc0003776.1_g000023 Rmu_sc0004399.1_g000009 Rmu_sc0004702.1_g000008 Rmu_sc0005580.1_g000009 Rmu_sc0007609.1_g000001 Rmu_sc0010172.1_g000001 Rmu_sc0011109.1_g000005
rosa_roxburghii	Rroxscaffold_2G00124800 Rroxscaffold_2G00124860 Rroxscaffold_2G00124910 Rroxscaffold_2G00125590
rosa_rugosa	Rorug02G0217900 Rorug02G0218000 Rorug02G0218100 Rorug02G0218200 Rorug02G0218300 Rorug04G0069100 Rorug04G0112100 Rorug05G0540900 Rorug05G0555100 Rorug07G0226600 Rorug07G0259000
rosa_samantha	Rh1CG249400 Rh2AG274600 Rh2AG274900 Rh2CG318700 Rh2DG282100 Rh2DG282300 Rh2DG301400
rosa_wichuraiana	Rw0G002340 Rw1G023500 Rw2G021840 Rw2G021870 Rw2G021910 Rw2G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	727
AccIII	TCCGGA	1 cut(s)	662
AciI	CCGC	8 cut(s)	107, 165, 621, 632, 727, 851, 899, 955
AclWI	GGATC	2 cut(s)	968, 981
AcsI	RAATTY	2 cut(s)	186, 683
AcuI	CTGAAG	1 cut(s)	954
AfeI	AGCGCT	1 cut(s)	786
AfiI	CCNNNNNNNGG	2 cut(s)	67, 948
AflII	CTTAAG	1 cut(s)	308
AgsI	TTSAA	5 cut(s)	152, 326, 524, 764, 946
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	6 cut(s)	242, 462, 649, 709, 818, 938
AluI	AGCT	6 cut(s)	242, 462, 649, 709, 818, 938
Alw26I	GTCTC	3 cut(s)	38, 257, 724
AlwI	GGATC	2 cut(s)	968, 981
Aor13HI	TCCGGA	1 cut(s)	662
Aor51HI	AGCGCT	1 cut(s)	786
ApeKI	GCWGC	2 cut(s)	815, 938
ApoI	RAATTY	2 cut(s)	186, 683
AseI	ATTAAT	1 cut(s)	912
AspLEI	GCGC	2 cut(s)	787, 815
AspS9I	GGNCC	1 cut(s)	465
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	2 cut(s)	655, 938
AsuII	TTCGAA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	465
BamHI	GGATCC	1 cut(s)	973
BarI	GAAGNNNNNNTAC	2 cut(s)	41, 73
BbsI	GAAGAC	3 cut(s)	117, 308, 324
BbvI	GCAGC	2 cut(s)	827, 925
BccI	CCATC	3 cut(s)	187, 409, 428
BciT130I	CCWGG	1 cut(s)	347
BciVI	GTATCC	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	3 cut(s)	38, 257, 724
BfaI	CTAG	1 cut(s)	990
BfoI	RGCGCY	1 cut(s)	788
BfrI	CTTAAG	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	688
BisI	GCNGC	2 cut(s)	816, 939
BlsI	GCNGC	2 cut(s)	817, 940
Bme1390I	CCNGG	2 cut(s)	14, 347
Bme18I	GGWCC	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	1 cut(s)	975
BmrFI	CCNGG	2 cut(s)	14, 347
BmsI	GCATC	4 cut(s)	614, 886, 919, 942
BoxI	GACNNNNGTC	1 cut(s)	30
BpiI	GAAGAC	3 cut(s)	117, 308, 324
Bpu14I	TTCGAA	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	38
BsaWI	WCCGGW	2 cut(s)	36, 662
BsaXI	ACNNNNNCTCC	4 cut(s)	222, 252, 962, 992
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 948
Bse1I	ACTGG	1 cut(s)	953
BseAI	TCCGGA	1 cut(s)	662
BseBI	CCWGG	1 cut(s)	347
BseGI	GGATG	6 cut(s)	198, 355, 439, 629, 901, 957
BseLI	CCNNNNNNNGG	2 cut(s)	67, 948
BseMII	CTCAG	3 cut(s)	519, 735, 779
BseNI	ACTGG	1 cut(s)	953
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	827, 925
BsiSI	CCGG	3 cut(s)	14, 37, 663
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	2 cut(s)	67, 948
BsmAI	GTCTC	3 cut(s)	38, 257, 724
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	173
Bso31I	GGTCTC	1 cut(s)	38
Bsp119I	TTCGAA	1 cut(s)	200
Bsp13I	TCCGGA	1 cut(s)	662
Bsp143I	GATC	1 cut(s)	973
BspACI	CCGC	8 cut(s)	107, 165, 621, 632, 727, 851, 899, 955
BspCNI	CTCAG	3 cut(s)	520, 734, 780
BspEI	TCCGGA	1 cut(s)	662
BspLI	GGNNCC	1 cut(s)	975
BspPI	GGATC	2 cut(s)	968, 981
BspT104I	TTCGAA	1 cut(s)	200
BspTI	CTTAAG	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	727
BsrI	ACTGG	1 cut(s)	953
BssMI	GATC	1 cut(s)	973
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	3 cut(s)	29, 116, 495
Bst6I	CTCTTC	2 cut(s)	219, 536
BstAFI	CTTAAG	1 cut(s)	308
BstBI	TTCGAA	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	711, 783
BstDEI	CTNAG	3 cut(s)	528, 721, 788
BstF5I	GGATG	6 cut(s)	198, 355, 439, 629, 901, 957
BstH2I	RGCGCY	1 cut(s)	788
BstHHI	GCGC	2 cut(s)	787, 815
BstKTI	GATC	1 cut(s)	976
BstMAI	GTCTC	3 cut(s)	38, 257, 724
BstMBI	GATC	1 cut(s)	973
BstMWI	GCNNNNNNNGC	1 cut(s)	938
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	755
BstPAI	GACNNNNGTC	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	12, 345
BstV1I	GCAGC	2 cut(s)	827, 925
BstV2I	GAAGAC	3 cut(s)	117, 308, 324
BstX2I	RGATCY	1 cut(s)	973
BstYI	RGATCY	1 cut(s)	973
BsuI	GTATCC	1 cut(s)	688
BtsCI	GGATG	6 cut(s)	198, 355, 439, 629, 901, 957
BtsIMutI	CAGTG	1 cut(s)	568
Cac8I	GCNNGC	2 cut(s)	711, 783
CfoI	GCGC	2 cut(s)	787, 815
Cfr13I	GGNCC	1 cut(s)	465
CviAII	CATG	5 cut(s)	298, 674, 704, 752, 923
CviJI	RGCY	7 cut(s)	242, 356, 462, 649, 709, 818, 938
CviKI_1	RGCY	7 cut(s)	242, 356, 462, 649, 709, 818, 938
DdeI	CTNAG	3 cut(s)	528, 721, 788
DpnI	GATC	1 cut(s)	975
DpnII	GATC	1 cut(s)	973
Eam1104I	CTCTTC	2 cut(s)	219, 536
EarI	CTCTTC	2 cut(s)	219, 536
EciI	GGCGGA	1 cut(s)	866
Eco31I	GGTCTC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	465
Eco47III	AGCGCT	1 cut(s)	786
Eco57I	CTGAAG	1 cut(s)	954
EcoRII	CCWGG	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	5 cut(s)	301, 677, 707, 755, 926
FalI	AAGNNNNNCTT	2 cut(s)	802, 834
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	5 cut(s)	297, 673, 703, 751, 922
Fnu4HI	GCNGC	2 cut(s)	816, 939
FokI	GGATG	6 cut(s)	205, 362, 446, 636, 908, 964
Fsp4HI	GCNGC	2 cut(s)	816, 939
FspBI	CTAG	1 cut(s)	990
GlaI	GCGC	2 cut(s)	786, 814
GluI	GCNGC	2 cut(s)	816, 939
HaeII	RGCGCY	1 cut(s)	788
HapII	CCGG	3 cut(s)	14, 37, 663
HhaI	GCGC	2 cut(s)	787, 815
Hin1II	CATG	5 cut(s)	301, 677, 707, 755, 926
Hin6I	GCGC	2 cut(s)	785, 813
HinP1I	GCGC	2 cut(s)	785, 813
HinfI	GANTC	4 cut(s)	71, 197, 524, 760
HpaII	CCGG	3 cut(s)	14, 37, 663
HphI	GGTGA	2 cut(s)	655, 938
Hpy188I	TCNGA	5 cut(s)	76, 192, 529, 724, 759
Hpy188III	TCNNGA	3 cut(s)	599, 663, 764
HpyAV	CCTTC	3 cut(s)	450, 527, 580
HpyCH4III	ACNGT	3 cut(s)	29, 116, 495
HpyCH4V	TGCA	3 cut(s)	627, 713, 781
HpyF10VI	GCNNNNNNNGC	1 cut(s)	938
HpyF3I	CTNAG	3 cut(s)	528, 721, 788
Hsp92II	CATG	5 cut(s)	301, 677, 707, 755, 926
HspAI	GCGC	2 cut(s)	785, 813
Kpn2I	TCCGGA	1 cut(s)	662
Kzo9I	GATC	1 cut(s)	973
LmnI	GCTCC	1 cut(s)	459
Lsp1109I	GCAGC	2 cut(s)	827, 925
LweI	GCATC	4 cut(s)	614, 886, 919, 942
MaeI	CTAG	1 cut(s)	990
MaeIII	GTNAC	3 cut(s)	551, 563, 688
MalI	GATC	1 cut(s)	975
MbiI	CCGCTC	1 cut(s)	727
MboI	GATC	1 cut(s)	973
MflI	RGATCY	1 cut(s)	973
MluCI	AATT	6 cut(s)	18, 52, 186, 362, 683, 909
MmeI	TCCRAC	1 cut(s)	873
MroI	TCCGGA	1 cut(s)	662
MseI	TTAA	5 cut(s)	248, 309, 497, 912, 959
MslI	CAYNNNNRTG	2 cut(s)	702, 927
MspA1I	CMGCKG	1 cut(s)	165
MspCI	CTTAAG	1 cut(s)	308
MspI	CCGG	3 cut(s)	14, 37, 663
MspR9I	CCNGG	2 cut(s)	14, 347
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	938
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	1 cut(s)	973
NlaIII	CATG	5 cut(s)	301, 677, 707, 755, 926
NlaIV	GGNNCC	1 cut(s)	975
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	563
NspI	RCATGY	1 cut(s)	755
NspV	TTCGAA	1 cut(s)	200
PfeI	GAWTC	4 cut(s)	71, 197, 524, 760
PkrI	GCNGC	2 cut(s)	817, 940
PshAI	GACNNNNGTC	1 cut(s)	30
PshBI	ATTAAT	1 cut(s)	912
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	975
PspPI	GGNCC	1 cut(s)	465
PsuI	RGATCY	1 cut(s)	973
RseI	CAYNNNNRTG	2 cut(s)	702, 927
SaqAI	TTAA	5 cut(s)	248, 309, 497, 912, 959
SatI	GCNGC	2 cut(s)	816, 939
Sau3AI	GATC	1 cut(s)	973
Sau96I	GGNCC	1 cut(s)	465
ScrFI	CCNGG	2 cut(s)	14, 347
SfaNI	GCATC	4 cut(s)	614, 886, 919, 942
SfuI	TTCGAA	1 cut(s)	200
SinI	GGWCC	1 cut(s)	465
SmiMI	CAYNNNNRTG	2 cut(s)	702, 927
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	6 cut(s)	18, 52, 186, 362, 683, 909
SsiI	CCGC	8 cut(s)	107, 165, 621, 632, 727, 851, 899, 955
SspI	AATATT	2 cut(s)	7, 148
SspMI	CTAG	1 cut(s)	990
StyD4I	CCNGG	2 cut(s)	12, 345
TaaI	ACNGT	3 cut(s)	29, 116, 495
TaqI	TCGA	1 cut(s)	200
TasI	AATT	6 cut(s)	18, 52, 186, 362, 683, 909
TfiI	GAWTC	4 cut(s)	71, 197, 524, 760
Tru1I	TTAA	5 cut(s)	248, 309, 497, 912, 959
Tru9I	TTAA	5 cut(s)	248, 309, 497, 912, 959
TscAI	CASTG	1 cut(s)	568
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	2 cut(s)	815, 938
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	5 cut(s)	17, 314, 366, 789, 987
TspGWI	ACGGA	3 cut(s)	83, 281, 966
TspRI	CASTG	1 cut(s)	568
Vha464I	CTTAAG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	465
VspI	ATTAAT	1 cut(s)	912
XapI	RAATTY	2 cut(s)	186, 683
XceI	RCATGY	1 cut(s)	755
XspI	CTAG	1 cut(s)	990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.