Rh7CG395300

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004199
Physical Location & Seq
Reverse (-)
50333112 .. 50339263
6152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG395300.1

Sequence Viewer

Length: 1560 bp
ATGGCCGGCGAAAAGAAGATTGAGAAAGCTGAGCCTGTAGCCACTGTGTTGGCATCAGATTCTGTTTCCGGATTAGGAGAGCAACAACTGGTTTCTGGGAAAGATGGAATACCATATGATTCGATCTCCTCCATGTCTTCTTCGAGGGTTGCCACCGACAGCATGAAAGGATATAATGGATCCTATACGCAGATGGACGAACATCGCTATGCTAATGCTAATAATTCACAGGCGGGTGTGCAGTCAGACAATGGTTCAATGGTCTATTATCTCCCCGGCTATAATCCATATGCCCCTGGAACTCTTATGGGTGTTGATGGCCAAGGTGTTGGTCAACAGCAGTATTTTTCTTCCTCAGGTTATATGCAGCCACCTGTTTCGTATGGTTCTGAAGCTATGCCTTGTTATCCATGGGACACAACATATTCTGGTGATATCTCTACAGCAACAAACTCTGGTTTTGGAAATCTAAAGTCTGGACCAGGTGGTACTGCTTTATCTAGGTCAAGTGGCTTTATGTCGGGCAAAACAAATGGAAATCTTGCTAGCAAATTTTCCAAGTCTTTCCCTTCTACACAACCGATCAAATCATTAAACAAGGTGCCTCATTTAGGTTCTGATTTCTCAGCCAGTCTTTTGAAGGGATACCCCTCAGCTGGAAGGTTCTCATCATTCACTAACCAGAAGGGTCTGTTTCCTCTTAATGGTCAAACAAACTACAAATCTAATGGGAGGATATTAAATGGAAACGACAGATTCAAGTCAAGGGAAAAATATAACAGAAATGAGGATTTTGAATCCTCAACTGAGTTGACACGTGGTCCAAGATCTCGCAACAAGATTACTCCTTCAGACTCATCAGTTGAGAAGGAAGTATTGGGATTTACAGTCAGTAGAGATAAATACAACCTACCAGATTTTCAGACTGATTATGAAAGTGTGAAGTTCTATGTCATTAAGTCTTACAGTGAAGATGATGTCCATAAGAGCATTAAATATGATGTTTGGGCCAGCACTCCGAATGGCAATAAGAAACTGGATGTAGCATTTCGTGATGCTGAAGCAAAATCGAGTGAGACAGGCACGCGGTGTCCTATATTCCTATTTTTCTCGGTGAATGGAAGTGGGCAGTTTGTAGGCCTGGCTGAGATGATTGGGGAGGTAGATTTCAACAAAGATATGGACTTCTGGCAAGTTGACAAGTGGAGTGGGTTCTTCCCAGTTAAATGGCATATAATAAAGGACATACCTAACACTCAGTTGCGGCATATTATCCTTGAAAACAATGATAACAGACCTGTAACTTTTACCCGGGACACTCAAGAGATTGGACTGAAGCAAGGTTTGGAAATGCTGAACATATTCAAAACTTATGCACCCAGATCATCTTTGTTAGATGACTTCAATTTCTATGAAAATCGAGAAAAGTCTCTACAAGCCAAAAGGAGCAGTAAACCTGCAACTTTAAAGATTGAAACTTACGATGATGGTGTTATCCCTGTAAGTTTTTATTCTTTCTTTCTATCTGTTACTTTTTTCTTTTTGGTGATTATTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

519

Amino Acids

57.59

Weight (kDa)

6.98

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 315 - 456 3.7e-45 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1465
AccB1I GGYRCC 1 cut(s) 601
AccII CGCG 1 cut(s) 1087
AccIII TCCGGA 1 cut(s) 68
AciI CCGC 3 cut(s) 233, 1087, 1264
AclWI GGATC 2 cut(s) 174, 187
AcoI YGGCCR 2 cut(s) 3, 319
AcsI RAATTY 1 cut(s) 551
AcuI CTGAAG 4 cut(s) 411, 834, 1080, 1355
AcvI CACGTG 1 cut(s) 818
AdeI CACNNNGTG 1 cut(s) 1089
AfaI GTAC 1 cut(s) 490
AfiI CCNNNNNNNGG 3 cut(s) 611, 656, 704
AflIII ACRYGT 1 cut(s) 815
AgsI TTSAA 9 cut(s) 258, 640, 760, 797, 1171, 1280, 1366, 1405, 1475
AhdI GACNNNNNGTC 1 cut(s) 819
AjnI CCWGG 3 cut(s) 295, 481, 1140
AjuI GAANNNNNNNTTGG 4 cut(s) 860, 892, 1328, 1360
AluBI AGCT 3 cut(s) 29, 395, 656
AluI AGCT 3 cut(s) 29, 395, 656
Alw26I GTCTC 2 cut(s) 1070, 1434
AlwI GGATC 2 cut(s) 174, 187
AlwNI CAGNNNCTG 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 1311
Aor13HI TCCGGA 1 cut(s) 68
AoxI GGCC 4 cut(s) 3, 319, 1008, 1138
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 1 cut(s) 551
Asp700I GAANNNNTTC 1 cut(s) 1361
AspS9I GGNCC 3 cut(s) 479, 821, 1008
AsuC2I CCSGG 3 cut(s) 276, 1312, 1313
AsuHPI GGTGA 3 cut(s) 443, 1126, 1558
AsuNHI GCTAGC 1 cut(s) 545
AvaI CYCGRG 1 cut(s) 1311
AvaII GGWCC 2 cut(s) 479, 821
AxyI CCTNAGG 1 cut(s) 355
BalI TGGCCA 1 cut(s) 321
BamHI GGATCC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 601
BbrPI CACGTG 1 cut(s) 818
BbsI GAAGAC 1 cut(s) 129
BbvCI CCTCAGC 1 cut(s) 652
BbvI GCAGC 1 cut(s) 379
BccI CCATC 4 cut(s) 98, 187, 311, 1481
BciT130I CCWGG 3 cut(s) 297, 483, 1142
BciVI GTATCC 1 cut(s) 638
BcnI CCSGG 3 cut(s) 276, 1312, 1313
BcoDI GTCTC 2 cut(s) 1070, 1434
BfaI CTAG 2 cut(s) 501, 546
BfmI CTRYAG 3 cut(s) 36, 441, 1556
BfuAI ACCTGC 1 cut(s) 1465
BfuI GTATCC 1 cut(s) 638
BglII AGATCT 1 cut(s) 827
BisI GCNGC 2 cut(s) 368, 1265
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 2 cut(s) 369, 1266
Bme1390I CCNGG 6 cut(s) 276, 297, 483, 1142, 1312, 1313
Bme18I GGWCC 2 cut(s) 479, 821
BmeRI GACNNNNNGTC 1 cut(s) 819
BmeT110I CYCGRG 1 cut(s) 1311
BmgT120I GGNCC 3 cut(s) 479, 821, 1008
BmiI GGNNCC 2 cut(s) 181, 603
BmrFI CCNGG 6 cut(s) 276, 297, 483, 1142, 1312, 1313
BmrI ACTGGG 1 cut(s) 1214
BmsI GCATC 2 cut(s) 62, 1045
BmtI GCTAGC 1 cut(s) 549
BmuI ACTGGG 1 cut(s) 1214
BpiI GAAGAC 1 cut(s) 129
Bpu10I CCTNAGC 1 cut(s) 652
Bpu1102I GCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 1305
BpuMI CCSGG 3 cut(s) 276, 1312, 1313
BsaAI YACGTR 1 cut(s) 818
BsaJI CCNNGG 5 cut(s) 274, 295, 322, 410, 1311
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 3 cut(s) 611, 656, 704
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 4 cut(s) 93, 630, 1041, 1220
Bse21I CCTNAGG 1 cut(s) 355
BseAI TCCGGA 1 cut(s) 68
BseBI CCWGG 3 cut(s) 297, 483, 1142
BseDI CCNNGG 5 cut(s) 274, 295, 322, 410, 1311
BseGI GGATG 1 cut(s) 1045
BseLI CCNNNNNNNGG 3 cut(s) 611, 656, 704
BseMII CTCAG 7 cut(s) 21, 369, 639, 666, 798, 1137, 1271
BseNI ACTGG 4 cut(s) 93, 630, 1041, 1220
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 379
BsgI GTGCAG 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 1087
BshFI GGCC 4 cut(s) 5, 321, 1010, 1140
BshNI GGYRCC 1 cut(s) 601
BsiHKCI CYCGRG 1 cut(s) 1311
BsiSI CCGG 4 cut(s) 6, 69, 276, 1312
BslFI GGGAC 2 cut(s) 428, 1328
BslI CCNNNNNNNGG 3 cut(s) 611, 656, 704
BsmAI GTCTC 2 cut(s) 1070, 1434
BsmFI GGGAC 2 cut(s) 428, 1328
BsnI GGCC 4 cut(s) 5, 321, 1010, 1140
BsoBI CYCGRG 1 cut(s) 1311
Bsp13I TCCGGA 1 cut(s) 68
Bsp143I GATC 5 cut(s) 123, 179, 582, 827, 1382
Bsp1720I GCTNAGC 1 cut(s) 30
Bsp19I CCATGG 1 cut(s) 410
BspACI CCGC 3 cut(s) 233, 1087, 1264
BspANI GGCC 4 cut(s) 5, 321, 1010, 1140
BspCNI CTCAG 7 cut(s) 22, 368, 638, 665, 799, 1138, 1270
BspEI TCCGGA 1 cut(s) 68
BspFNI CGCG 1 cut(s) 1087
BspLI GGNNCC 2 cut(s) 181, 603
BspMI ACCTGC 1 cut(s) 1465
BspOI GCTAGC 1 cut(s) 549
BspPI GGATC 2 cut(s) 174, 187
BspT107I GGYRCC 1 cut(s) 601
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 4 cut(s) 93, 630, 1041, 1220
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 5 cut(s) 274, 295, 322, 410, 1311
BssMI GATC 5 cut(s) 123, 179, 582, 827, 1382
BssT1I CCWWGG 2 cut(s) 322, 410
Bst2UI CCWGG 3 cut(s) 297, 483, 1142
Bst4CI ACNGT 3 cut(s) 46, 889, 968
BstBAI YACGTR 1 cut(s) 818
BstC8I GCNNGC 4 cut(s) 7, 547, 1012, 1085
BstDEI CTNAG 7 cut(s) 30, 355, 625, 652, 807, 1146, 1257
BstDSI CCRYGG 1 cut(s) 410
BstENI CCTNNNNNAGG 1 cut(s) 609
BstF5I GGATG 1 cut(s) 1045
BstFNI CGCG 1 cut(s) 1087
BstKTI GATC 5 cut(s) 126, 182, 585, 830, 1385
BstMAI GTCTC 2 cut(s) 1070, 1434
BstMBI GATC 5 cut(s) 123, 179, 582, 827, 1382
BstNI CCWGG 3 cut(s) 297, 483, 1142
BstSCI CCNGG 6 cut(s) 274, 295, 481, 1140, 1310, 1311
BstSFI CTRYAG 3 cut(s) 36, 441, 1556
BstUI CGCG 1 cut(s) 1087
BstV1I GCAGC 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 129
BstX2I RGATCY 2 cut(s) 179, 827
BstXI CCANNNNNNTGG 3 cut(s) 49, 329, 1227
BstYI RGATCY 2 cut(s) 179, 827
Bsu36I CCTNAGG 1 cut(s) 355
BsuI GTATCC 1 cut(s) 638
BsuRI GGCC 4 cut(s) 5, 321, 1010, 1140
BtgI CCRYGG 1 cut(s) 410
BtgZI GCGATG 1 cut(s) 188
BtsCI GGATG 1 cut(s) 1045
BtsIMutI CAGTG 2 cut(s) 42, 973
BveI ACCTGC 1 cut(s) 1465
Cac8I GCNNGC 4 cut(s) 7, 547, 1012, 1085
CaiI CAGNNNCTG 1 cut(s) 62
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 3 cut(s) 479, 821, 1008
Cfr9I CCCGGG 1 cut(s) 1311
CsiI ACCWGGT 1 cut(s) 481
Csp6I GTAC 1 cut(s) 489
CspCI CAANNNNNGTGG 2 cut(s) 1189, 1224
CviAII CATG 3 cut(s) 133, 163, 411
CviQI GTAC 1 cut(s) 489
DdeI CTNAG 7 cut(s) 30, 355, 625, 652, 807, 1146, 1257
DpnI GATC 5 cut(s) 125, 181, 584, 829, 1384
DpnII GATC 5 cut(s) 123, 179, 582, 827, 1382
DraI TTTAAA 1 cut(s) 1467
DraIII CACNNNGTG 1 cut(s) 1089
DriI GACNNNNNGTC 1 cut(s) 819
EaeI YGGCCR 2 cut(s) 3, 319
Eam1105I GACNNNNNGTC 1 cut(s) 819
Eco130I CCWWGG 2 cut(s) 322, 410
Eco147I AGGCCT 1 cut(s) 1140
Eco32I GATATC 1 cut(s) 436
Eco47I GGWCC 2 cut(s) 479, 821
Eco57I CTGAAG 4 cut(s) 411, 834, 1080, 1355
Eco72I CACGTG 1 cut(s) 818
Eco81I CCTNAGG 1 cut(s) 355
Eco88I CYCGRG 1 cut(s) 1311
EcoNI CCTNNNNNAGG 1 cut(s) 609
EcoRII CCWGG 3 cut(s) 295, 481, 1140
EcoRV GATATC 1 cut(s) 436
EcoT14I CCWWGG 2 cut(s) 322, 410
ErhI CCWWGG 2 cut(s) 322, 410
FaeI CATG 3 cut(s) 136, 166, 414
FaqI GGGAC 2 cut(s) 428, 1328
FatI CATG 3 cut(s) 132, 162, 410
FauI CCCGC 1 cut(s) 226
FauNDI CATATG 2 cut(s) 115, 289
Fnu4HI GCNGC 2 cut(s) 368, 1265
FokI GGATG 1 cut(s) 1052
Fsp4HI GCNGC 2 cut(s) 368, 1265
FspBI CTAG 2 cut(s) 501, 546
GluI GCNGC 2 cut(s) 368, 1265
HaeIII GGCC 4 cut(s) 5, 321, 1010, 1140
HapII CCGG 4 cut(s) 6, 69, 276, 1312
Hin1II CATG 3 cut(s) 136, 166, 414
HincII GTYRAC 3 cut(s) 335, 813, 1198
HindII GTYRAC 3 cut(s) 335, 813, 1198
HinfI GANTC 5 cut(s) 59, 119, 756, 797, 854
HpaII CCGG 4 cut(s) 6, 69, 276, 1312
HphI GGTGA 3 cut(s) 443, 1126, 1558
Hpy166II GTNNAC 4 cut(s) 335, 813, 1198, 1454
Hpy188I TCNGA 7 cut(s) 58, 247, 391, 619, 853, 924, 1020
Hpy188III TCNNGA 5 cut(s) 69, 477, 1052, 1322, 1421
Hpy8I GTNNAC 4 cut(s) 335, 813, 1198, 1454
HpyAV CCTTC 6 cut(s) 579, 634, 654, 679, 858, 862
HpyCH4III ACNGT 3 cut(s) 46, 889, 968
HpyCH4IV ACGT 1 cut(s) 817
HpyCH4V TGCA 4 cut(s) 241, 367, 1376, 1460
HpyF3I CTNAG 7 cut(s) 30, 355, 625, 652, 807, 1146, 1257
HpySE526I ACGT 1 cut(s) 817
Hsp92II CATG 3 cut(s) 136, 166, 414
Kpn2I TCCGGA 1 cut(s) 68
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 5 cut(s) 123, 179, 582, 827, 1382
LmnI GCTCC 1 cut(s) 1446
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 2 cut(s) 62, 1045
MabI ACCWGGT 1 cut(s) 481
MaeI CTAG 2 cut(s) 501, 546
MaeII ACGT 1 cut(s) 817
MaeIII GTNAC 2 cut(s) 1300, 1528
MalI GATC 5 cut(s) 125, 181, 584, 829, 1384
MboI GATC 5 cut(s) 123, 179, 582, 827, 1382
MboII GAAGA 6 cut(s) 28, 129, 132, 342, 983, 1207
MflI RGATCY 2 cut(s) 179, 827
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 3 cut(s) 223, 551, 1405
MluNI TGGCCA 1 cut(s) 321
MlyI GAGTC 1 cut(s) 848
Mox20I TGGCCA 1 cut(s) 321
MroI TCCGGA 1 cut(s) 68
MroNI GCCGGC 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 1361
MscI TGGCCA 1 cut(s) 321
MseI TTAA 7 cut(s) 593, 702, 740, 957, 993, 1224, 1466
MslI CAYNNNNRTG 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 656
MspI CCGG 4 cut(s) 6, 69, 276, 1312
MspR9I CCNGG 6 cut(s) 276, 297, 483, 1142, 1312, 1313
MvaI CCWGG 3 cut(s) 297, 483, 1142
MvnI CGCG 1 cut(s) 1087
NaeI GCCGGC 1 cut(s) 7
NciI CCSGG 3 cut(s) 276, 1312, 1313
NcoI CCATGG 1 cut(s) 410
NdeI CATATG 2 cut(s) 115, 289
NdeII GATC 5 cut(s) 123, 179, 582, 827, 1382
NgoMIV GCCGGC 1 cut(s) 5
NheI GCTAGC 1 cut(s) 545
NlaIII CATG 3 cut(s) 136, 166, 414
NlaIV GGNNCC 2 cut(s) 181, 603
PceI AGGCCT 1 cut(s) 1140
PdiI GCCGGC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 1361
PfeI GAWTC 4 cut(s) 59, 119, 756, 797
PkrI GCNGC 2 cut(s) 369, 1266
PleI GAGTC 1 cut(s) 848
PmaCI CACGTG 1 cut(s) 818
PmlI CACGTG 1 cut(s) 818
PpsI GAGTC 1 cut(s) 848
Ppu21I YACGTR 1 cut(s) 818
Psp6I CCWGG 3 cut(s) 295, 481, 1140
PspCI CACGTG 1 cut(s) 818
PspGI CCWGG 3 cut(s) 295, 481, 1140
PspN4I GGNNCC 2 cut(s) 181, 603
PspPI GGNCC 3 cut(s) 479, 821, 1008
PstNI CAGNNNCTG 1 cut(s) 62
PsuI RGATCY 2 cut(s) 179, 827
PvuII CAGCTG 1 cut(s) 656
RsaI GTAC 1 cut(s) 490
RsaNI GTAC 1 cut(s) 489
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 7 cut(s) 593, 702, 740, 957, 993, 1224, 1466
SatI GCNGC 2 cut(s) 368, 1265
Sau3AI GATC 5 cut(s) 123, 179, 582, 827, 1382
Sau96I GGNCC 3 cut(s) 479, 821, 1008
SchI GAGTC 1 cut(s) 848
ScrFI CCNGG 6 cut(s) 276, 297, 483, 1142, 1312, 1313
SexAI ACCWGGT 1 cut(s) 481
SfaNI GCATC 2 cut(s) 62, 1045
SfcI CTRYAG 3 cut(s) 36, 441, 1556
SinI GGWCC 2 cut(s) 479, 821
SmaI CCCGGG 1 cut(s) 1313
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 1320
SmoI CTYRAG 1 cut(s) 1320
Sse9I AATT 3 cut(s) 223, 551, 1405
SseBI AGGCCT 1 cut(s) 1140
SsiI CCGC 3 cut(s) 233, 1087, 1264
SspMI CTAG 2 cut(s) 501, 546
StuI AGGCCT 1 cut(s) 1140
StyD4I CCNGG 6 cut(s) 274, 295, 481, 1140, 1310, 1311
StyI CCWWGG 2 cut(s) 322, 410
TaaI ACNGT 3 cut(s) 46, 889, 968
TaiI ACGT 1 cut(s) 820
TaqI TCGA 4 cut(s) 122, 143, 1070, 1420
TasI AATT 3 cut(s) 223, 551, 1405
TauI GCSGC 1 cut(s) 1267
TfiI GAWTC 4 cut(s) 59, 119, 756, 797
Tru1I TTAA 7 cut(s) 593, 702, 740, 957, 993, 1224, 1466
Tru9I TTAA 7 cut(s) 593, 702, 740, 957, 993, 1224, 1466
TscAI CASTG 2 cut(s) 49, 973
TseI GCWGC 1 cut(s) 367
TspDTI ATGAA 3 cut(s) 179, 948, 1428
TspMI CCCGGG 1 cut(s) 1311
TspRI CASTG 2 cut(s) 49, 973
VpaK11BI GGWCC 2 cut(s) 479, 821
XagI CCTNNNNNAGG 1 cut(s) 609
XapI RAATTY 1 cut(s) 551
XmaI CCCGGG 1 cut(s) 1311
XmnI GAANNNNTTC 1 cut(s) 1361
XspI CTAG 2 cut(s) 501, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.