FvH4_5g30420

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004199
Physical Location & Seq
Forward (+)
21305603 .. 21310989
5387 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30420.t7

Sequence Viewer

Length: 1518 bp
ATGGCCGGTGAGAAGAAGATTGAGAAAGCTGAACCTGTAGCCACTGTGTTGGCATCAGACTCTGTTAACGGATTAGGAGAGCCGCAACTGGTCTCTGGGAAAGAAGGGAAACCATATGATGCGATCTCCTCCATGACTTCTTCAAGGGATGCCACCCATAGCATCAAAGGATATAATGGATCCTATACTCAATTGGACGAACATCGCTATGCAAATGCTAGTAATTCACATACGGGTGTGCAGTCGGACAATGGTTCAATGGTCTATTATCTTCCCAGCTATAATCCTTATGCCCCTGGAACTCTTATGGGTGTCGATGGCCAAGGTGTCGGTCAACAGCAGTATTATTCTTCATCAGCAACAAACTCTGGTTTTGGAAATCTAAAATCTGGACCTGGTGGCACAACTCTATCTAGGTCAAGTGGCTACAAAGCAAATGGCAATCTTGCTAGCAAATTTTCCAAGCCTTTCCCTTCTACACAACCCATCAAATCTTTAAACAAGGTGCCTTATTTAGGTTCTGATTTCTCAGCCGGTCTTTTGAAGGGATATCCTTCGACTGGAAGATTCTCATCATTCACTAACCAGAAGGGTCTGTTTCCTCTTAATGGTGAAGCAAACTACAGATCTAATGGGAGGATTCTAAATGTAAACGACAGATTCAAATCAAGGGATAAATTTAATAGAAATGAGGATTTTGAATCCTCAACTGAGTTGACACGTGGTCCAAGATCTCGCAACAAGAGTCCTCCTTCAGACTCGGCAGTTGAGAAGGAAGTATTGGGGTTTACAGTCAGTAGGGATAAATATAACCTACCAGATTTTCAGACTGATTATGAAAGTGCAAAGTTCTACGTTATTAAGTCATACAGTGAAGATGACGTCCATAAGAGCATTAAATATGATGTCTGGGCCAGCACTCCAAATGGCAATAAGAAACTGGATGCAGCATTCCGTGATGCTGAAGCAAAATCTAGTGAAACAGGCAAACGGTGTCCTATCTTCCTCTTTTTCTCGGTGAATGGTAGTGGGCAGTTTGTAGGCCTAGCCGAGATGATTGGGGAGGTAGATTTTAACAAAGATATGGACTTCTGGCAAGTTGACAAGTGGAGTGGGTTCTTCCCAGTTAATTGGCATGTAGTAAAGGACATACCTAACACTCAGTTGCGGCATATTATCCTTGAAAACAATGATAACAGACCTGTAACGTTTACCCGGGACACACAAGAGATTGGACTGAAGCAAGGTTTGGAAATGCTTAACATATTCAAAAGTTATGAACCCAAAACATCCTTGCTAGATGACTTCAATTTCTATGAAAATCGAGAAAAGTCTCTACAGGCCAAAAGGGGCAGCAAACCTGCGACTTTAAAGATTGAAACTAATGATGATGGAGATATCTCTAAGCATATGAATACTGGAGGGGAAGACTTTGAAGCTAAATCGGGTGGGATCGGGATGACTTCTGACCGAACATCTCTCATTTCACTTACAAAAAATCTCTCCCTCAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

506

Amino Acids

55.71

Weight (kDa)

7.68

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 151 - 293 4.4e-46 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 885
Acc36I ACCTGC 1 cut(s) 1369
AccB1I GGYRCC 1 cut(s) 505
AciI CCGC 2 cut(s) 83, 1168
AclI AACGTT 1 cut(s) 1208
AclWI GGATC 3 cut(s) 174, 187, 1460
AcoI YGGCCR 2 cut(s) 3, 319
AcsI RAATTY 2 cut(s) 455, 677
AcuI CTGAAG 3 cut(s) 738, 984, 1259
AcvI CACGTG 1 cut(s) 722
AcyI GRCGYC 1 cut(s) 882
AfiI CCNNNNNNNGG 3 cut(s) 515, 560, 608
AflIII ACRYGT 1 cut(s) 719
AhdI GACNNNNNGTC 1 cut(s) 723
AjnI CCWGG 2 cut(s) 295, 394
AjuI GAANNNNNNNTTGG 4 cut(s) 764, 796, 1232, 1264
AluBI AGCT 3 cut(s) 29, 279, 1439
AluI AGCT 3 cut(s) 29, 279, 1439
Alw26I GTCTC 2 cut(s) 97, 1338
AlwI GGATC 3 cut(s) 174, 187, 1460
AlwNI CAGNNNCTG 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 1215
AoxI GGCC 5 cut(s) 3, 319, 912, 1042, 1341
ApeKI GCWGC 2 cut(s) 947, 1353
ApoI RAATTY 2 cut(s) 455, 677
AspS9I GGNCC 3 cut(s) 392, 725, 912
AsuC2I CCSGG 2 cut(s) 1216, 1217
AsuHPI GGTGA 3 cut(s) 20, 623, 1030
AsuNHI GCTAGC 1 cut(s) 449
AvaI CYCGRG 1 cut(s) 1215
AvaII GGWCC 2 cut(s) 392, 725
BalI TGGCCA 1 cut(s) 321
BamHI GGATCC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 505
BbrPI CACGTG 1 cut(s) 722
BbsI GAAGAC 1 cut(s) 1434
BbvI GCAGC 2 cut(s) 959, 1365
BccI CCATC 3 cut(s) 311, 494, 1385
BciT130I CCWGG 2 cut(s) 297, 396
BcnI CCSGG 2 cut(s) 1216, 1217
BcoDI GTCTC 2 cut(s) 97, 1338
BfaI CTAG 6 cut(s) 219, 414, 450, 975, 1046, 1298
BfmI CTRYAG 3 cut(s) 36, 622, 1337
BfuAI ACCTGC 1 cut(s) 1369
BglII AGATCT 2 cut(s) 626, 731
BisI GCNGC 4 cut(s) 83, 948, 1169, 1354
BlsI GCNGC 4 cut(s) 84, 949, 1170, 1355
Bme1390I CCNGG 4 cut(s) 297, 396, 1216, 1217
Bme18I GGWCC 2 cut(s) 392, 725
BmeRI GACNNNNNGTC 1 cut(s) 723
BmeT110I CYCGRG 1 cut(s) 1215
BmgT120I GGNCC 3 cut(s) 392, 725, 912
BmiI GGNNCC 2 cut(s) 181, 507
BmrFI CCNGG 4 cut(s) 297, 396, 1216, 1217
BmrI ACTGGG 1 cut(s) 1118
BmsI GCATC 6 cut(s) 62, 109, 139, 171, 934, 949
BmtI GCTAGC 1 cut(s) 453
BmuI ACTGGG 1 cut(s) 1118
BpiI GAAGAC 1 cut(s) 1434
BpmI CTGGAG 1 cut(s) 1440
BpuMI CCSGG 2 cut(s) 1216, 1217
BsaAI YACGTR 1 cut(s) 722
BsaBI GATNNNNATC 2 cut(s) 571, 664
BsaHI GRCGYC 1 cut(s) 882
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 3 cut(s) 295, 322, 1215
Bsc4I CCNNNNNNNGG 3 cut(s) 515, 560, 608
Bse118I RCCGGY 2 cut(s) 5, 533
Bse1I ACTGG 5 cut(s) 93, 565, 945, 1124, 1423
Bse8I GATNNNNATC 2 cut(s) 571, 664
BseBI CCWGG 2 cut(s) 297, 396
BseDI CCNNGG 3 cut(s) 295, 322, 1215
BseGI GGATG 4 cut(s) 154, 949, 1289, 1464
BseJI GATNNNNATC 2 cut(s) 571, 664
BseLI CCNNNNNNNGG 3 cut(s) 515, 560, 608
BseMII CTCAG 3 cut(s) 543, 702, 1175
BseNI ACTGG 5 cut(s) 93, 565, 945, 1124, 1423
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 2 cut(s) 959, 1365
BseYI CCCAGC 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 260
BshFI GGCC 5 cut(s) 5, 321, 914, 1044, 1343
BshNI GGYRCC 1 cut(s) 505
BsiHKCI CYCGRG 1 cut(s) 1215
BsiSI CCGG 3 cut(s) 6, 534, 1216
BslFI GGGAC 1 cut(s) 1232
BslI CCNNNNNNNGG 3 cut(s) 515, 560, 608
BsmAI GTCTC 2 cut(s) 97, 1338
BsmFI GGGAC 1 cut(s) 1232
BsmI GAATGC 1 cut(s) 950
BsnI GGCC 5 cut(s) 5, 321, 914, 1044, 1343
Bso31I GGTCTC 1 cut(s) 97
BsoBI CYCGRG 1 cut(s) 1215
Bsp143I GATC 5 cut(s) 123, 179, 626, 731, 1452
BspACI CCGC 2 cut(s) 83, 1168
BspANI GGCC 5 cut(s) 5, 321, 914, 1044, 1343
BspCNI CTCAG 3 cut(s) 542, 703, 1174
BspLI GGNNCC 2 cut(s) 181, 507
BspMI ACCTGC 1 cut(s) 1369
BspOI GCTAGC 1 cut(s) 453
BspPI GGATC 3 cut(s) 174, 187, 1460
BspT107I GGYRCC 1 cut(s) 505
BspTNI GGTCTC 1 cut(s) 97
BsrFI RCCGGY 2 cut(s) 5, 533
BsrI ACTGG 5 cut(s) 93, 565, 945, 1124, 1423
BssAI RCCGGY 2 cut(s) 5, 533
BssECI CCNNGG 3 cut(s) 295, 322, 1215
BssMI GATC 5 cut(s) 123, 179, 626, 731, 1452
BssNI GRCGYC 1 cut(s) 882
BssT1I CCWWGG 1 cut(s) 322
Bst2UI CCWGG 2 cut(s) 297, 396
Bst4CI ACNGT 4 cut(s) 46, 793, 872, 993
BstACI GRCGYC 1 cut(s) 882
BstBAI YACGTR 1 cut(s) 722
BstC8I GCNNGC 2 cut(s) 451, 916
BstDEI CTNAG 4 cut(s) 529, 711, 1161, 1404
BstENI CCTNNNNNAGG 1 cut(s) 513
BstF5I GGATG 4 cut(s) 154, 949, 1289, 1464
BstKTI GATC 5 cut(s) 126, 182, 629, 734, 1455
BstMAI GTCTC 2 cut(s) 97, 1338
BstMBI GATC 5 cut(s) 123, 179, 626, 731, 1452
BstNI CCWGG 2 cut(s) 297, 396
BstNSI RCATGY 1 cut(s) 1139
BstSCI CCNGG 4 cut(s) 295, 394, 1214, 1215
BstSFI CTRYAG 3 cut(s) 36, 622, 1337
BstV1I GCAGC 2 cut(s) 959, 1365
BstV2I GAAGAC 1 cut(s) 1434
BstX2I RGATCY 3 cut(s) 179, 626, 731
BstXI CCANNNNNNTGG 2 cut(s) 49, 1131
BstYI RGATCY 3 cut(s) 179, 626, 731
BsuRI GGCC 5 cut(s) 5, 321, 914, 1044, 1343
BtgZI GCGATG 1 cut(s) 188
BtsCI GGATG 4 cut(s) 154, 949, 1289, 1464
BtsIMutI CAGTG 2 cut(s) 42, 877
BveI ACCTGC 1 cut(s) 1369
Cac8I GCNNGC 2 cut(s) 451, 916
CaiI CAGNNNCTG 1 cut(s) 62
Cfr10I RCCGGY 2 cut(s) 5, 533
Cfr13I GGNCC 3 cut(s) 392, 725, 912
Cfr9I CCCGGG 1 cut(s) 1215
CsiI ACCWGGT 1 cut(s) 394
CspCI CAANNNNNGTGG 2 cut(s) 1093, 1128
CviAII CATG 2 cut(s) 133, 1136
DdeI CTNAG 4 cut(s) 529, 711, 1161, 1404
DpnI GATC 5 cut(s) 125, 181, 628, 733, 1454
DpnII GATC 5 cut(s) 123, 179, 626, 731, 1452
DraI TTTAAA 2 cut(s) 498, 1371
DriI GACNNNNNGTC 1 cut(s) 723
EaeI YGGCCR 2 cut(s) 3, 319
Eam1105I GACNNNNNGTC 1 cut(s) 723
Eco130I CCWWGG 1 cut(s) 322
Eco147I AGGCCT 1 cut(s) 1044
Eco31I GGTCTC 1 cut(s) 97
Eco32I GATATC 2 cut(s) 551, 1399
Eco47I GGWCC 2 cut(s) 392, 725
Eco57I CTGAAG 3 cut(s) 738, 984, 1259
Eco72I CACGTG 1 cut(s) 722
Eco88I CYCGRG 1 cut(s) 1215
EcoNI CCTNNNNNAGG 1 cut(s) 513
EcoRII CCWGG 2 cut(s) 295, 394
EcoRV GATATC 2 cut(s) 551, 1399
EcoT14I CCWWGG 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 322
FaeI CATG 2 cut(s) 136, 1139
FaqI GGGAC 1 cut(s) 1232
FatI CATG 2 cut(s) 132, 1135
FauNDI CATATG 2 cut(s) 115, 1410
Fnu4HI GCNGC 4 cut(s) 83, 948, 1169, 1354
FokI GGATG 4 cut(s) 161, 956, 1276, 1471
Fsp4HI GCNGC 4 cut(s) 83, 948, 1169, 1354
FspBI CTAG 6 cut(s) 219, 414, 450, 975, 1046, 1298
GluI GCNGC 4 cut(s) 83, 948, 1169, 1354
GsaI CCCAGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 1440
HaeIII GGCC 5 cut(s) 5, 321, 914, 1044, 1343
HapII CCGG 3 cut(s) 6, 534, 1216
Hin1I GRCGYC 1 cut(s) 882
Hin1II CATG 2 cut(s) 136, 1139
HincII GTYRAC 4 cut(s) 67, 335, 717, 1102
HindII GTYRAC 4 cut(s) 67, 335, 717, 1102
HinfI GANTC 7 cut(s) 59, 567, 640, 660, 701, 745, 758
HpaI GTTAAC 1 cut(s) 67
HpaII CCGG 3 cut(s) 6, 534, 1216
HphI GGTGA 3 cut(s) 20, 623, 1030
Hpy166II GTNNAC 7 cut(s) 67, 335, 652, 717, 789, 1102, 1212
Hpy188I TCNGA 6 cut(s) 58, 247, 523, 757, 828, 1468
Hpy188III TCNNGA 3 cut(s) 390, 1325, 1456
Hpy8I GTNNAC 7 cut(s) 67, 335, 652, 717, 789, 1102, 1212
HpyAV CCTTC 7 cut(s) 98, 483, 538, 564, 583, 762, 766
HpyCH4III ACNGT 4 cut(s) 46, 793, 872, 993
HpyCH4IV ACGT 4 cut(s) 721, 855, 882, 1208
HpyCH4V TGCA 4 cut(s) 212, 241, 845, 947
HpyF3I CTNAG 4 cut(s) 529, 711, 1161, 1404
HpySE526I ACGT 4 cut(s) 721, 855, 882, 1208
Hsp92I GRCGYC 1 cut(s) 882
Hsp92II CATG 2 cut(s) 136, 1139
KspAI GTTAAC 1 cut(s) 67
Kzo9I GATC 5 cut(s) 123, 179, 626, 731, 1452
Lsp1109I GCAGC 2 cut(s) 959, 1365
LweI GCATC 6 cut(s) 62, 109, 139, 171, 934, 949
MabI ACCWGGT 1 cut(s) 394
MaeI CTAG 6 cut(s) 219, 414, 450, 975, 1046, 1298
MaeII ACGT 4 cut(s) 721, 855, 882, 1208
MaeIII GTNAC 1 cut(s) 1204
MalI GATC 5 cut(s) 125, 181, 628, 733, 1454
MboI GATC 5 cut(s) 123, 179, 626, 731, 1452
MfeI CAATTG 1 cut(s) 191
MflI RGATCY 3 cut(s) 179, 626, 731
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 6 cut(s) 191, 223, 455, 677, 1129, 1309
MluNI TGGCCA 1 cut(s) 321
MlyI GAGTC 3 cut(s) 53, 752, 754
MmeI TCCRAC 1 cut(s) 225
Mox20I TGGCCA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 321
MslI CAYNNNNRTG 2 cut(s) 207, 234
Msp20I TGGCCA 1 cut(s) 321
MspI CCGG 3 cut(s) 6, 534, 1216
MspR9I CCNGG 4 cut(s) 297, 396, 1216, 1217
MunI CAATTG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 950
MvaI CCWGG 2 cut(s) 297, 396
NciI CCSGG 2 cut(s) 1216, 1217
NdeI CATATG 2 cut(s) 115, 1410
NdeII GATC 5 cut(s) 123, 179, 626, 731, 1452
NheI GCTAGC 1 cut(s) 449
NlaIII CATG 2 cut(s) 136, 1139
NlaIV GGNNCC 2 cut(s) 181, 507
NmeAIII GCCGAG 2 cut(s) 740, 1075
NspI RCATGY 1 cut(s) 1139
PceI AGGCCT 1 cut(s) 1044
PctI GAATGC 1 cut(s) 950
PfeI GAWTC 4 cut(s) 567, 640, 660, 701
PkrI GCNGC 4 cut(s) 84, 949, 1170, 1355
PleI GAGTC 3 cut(s) 53, 752, 753
PmaCI CACGTG 1 cut(s) 722
PmlI CACGTG 1 cut(s) 722
PpsI GAGTC 3 cut(s) 53, 752, 753
Ppu21I YACGTR 1 cut(s) 722
Psp1406I AACGTT 1 cut(s) 1208
Psp6I CCWGG 2 cut(s) 295, 394
PspCI CACGTG 1 cut(s) 722
PspFI CCCAGC 1 cut(s) 275
PspGI CCWGG 2 cut(s) 295, 394
PspN4I GGNNCC 2 cut(s) 181, 507
PspPI GGNCC 3 cut(s) 392, 725, 912
PstNI CAGNNNCTG 1 cut(s) 62
PsuI RGATCY 3 cut(s) 179, 626, 731
RseI CAYNNNNRTG 2 cut(s) 207, 234
SatI GCNGC 4 cut(s) 83, 948, 1169, 1354
Sau3AI GATC 5 cut(s) 123, 179, 626, 731, 1452
Sau96I GGNCC 3 cut(s) 392, 725, 912
SchI GAGTC 3 cut(s) 53, 752, 754
ScrFI CCNGG 4 cut(s) 297, 396, 1216, 1217
SexAI ACCWGGT 1 cut(s) 394
SfaNI GCATC 6 cut(s) 62, 109, 139, 171, 934, 949
SfcI CTRYAG 3 cut(s) 36, 622, 1337
SinI GGWCC 2 cut(s) 392, 725
SmaI CCCGGG 1 cut(s) 1217
SmiMI CAYNNNNRTG 2 cut(s) 207, 234
Sse9I AATT 6 cut(s) 191, 223, 455, 677, 1129, 1309
SseBI AGGCCT 1 cut(s) 1044
SsiI CCGC 2 cut(s) 83, 1168
SspMI CTAG 6 cut(s) 219, 414, 450, 975, 1046, 1298
StuI AGGCCT 1 cut(s) 1044
StyD4I CCNGG 4 cut(s) 295, 394, 1214, 1215
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 4 cut(s) 46, 793, 872, 993
TaiI ACGT 4 cut(s) 724, 858, 885, 1211
TaqI TCGA 3 cut(s) 315, 557, 1324
TaqII GACCGA 2 cut(s) 320, 1485
TasI AATT 6 cut(s) 191, 223, 455, 677, 1129, 1309
TauI GCSGC 2 cut(s) 85, 1171
TfiI GAWTC 4 cut(s) 567, 640, 660, 701
TscAI CASTG 2 cut(s) 49, 877
TseI GCWGC 2 cut(s) 947, 1353
TspDTI ATGAA 5 cut(s) 342, 852, 1293, 1332, 1427
TspGWI ACGGA 2 cut(s) 84, 944
TspMI CCCGGG 1 cut(s) 1215
TspRI CASTG 2 cut(s) 49, 877
VpaK11BI GGWCC 2 cut(s) 392, 725
XagI CCTNNNNNAGG 1 cut(s) 513
XapI RAATTY 2 cut(s) 455, 677
XceI RCATGY 1 cut(s) 1139
XmaI CCCGGG 1 cut(s) 1215
XspI CTAG 6 cut(s) 219, 414, 450, 975, 1046, 1298
ZraI GACGTC 1 cut(s) 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.