Rh7DG372100

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004199
Physical Location & Seq
Forward (+)
50399059 .. 50405285
6227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG372100.1

Sequence Viewer

Length: 1422 bp
ATGGACGAACATCGCTATGCAAATGCTAATAATTCACAGGCGGGTGTTCAGTCAGACAATGGTTCAATGGTCTATTATCTCCCCGGCTATAATCCATATGGCCCTGGAACTCTTATGGGTGTTGATGGCCAAGGTGTTGGTCAACAGCAGTATTTTTCTTCCTCAGGTTATATGCAGCCACCTGTTTCGTATGGTTCTGAAGCTATGCCCTGTTATTCATGGGACACAACATATTCTGGTGATATCTCTACAGCAACAAACTCTGGTTTTGGAAATCTAAAGTCTGGACCAGGTGGTACTGCTTTATCTAGGTCAAGTGGCTTTACGTCAGGCAAAACGAATGGAAATCTTGCTAGCAAATTTTCCAAGTCTTTCCCTTCTACACAACCCATCAAATCATTAAACAAGGTGCCTCATTTAGGTTCTGATTTCTCAGCCAGTCTTTTGAAGGGATACCCCTCAACTGGAAGGTTCTCATCATTCACTAACCAGAAGGGTCCGTTTCCTCTTAATGGTCAAACAAACTACAAATCTAATGGGAGGATATTAAATGGAAATGACAGATTCAAGTCAAGGGAAAAATATAACAGAAATGAGGATTTTGAATCCTCAACTGAGTTGACACGTGGTCCAAGATCTCGCAACAAGATTTCTCCTTCAGACTCATCAGTTGAGAAGGAAGTATTGGGATTTACAGTCAGTAGAGATAAATACAACCTACCAGATTTTCAGACTGATTATGAAAGTGTGAAGTTCTATGTCATTAAGTCTTACAGTGAAGATGATGTCCATAAGAGCATTAAATATGATGTTTGGGCCAGCACTCCGAATGGCAATAAGAAACTGGATGTAGCATTTCGTGATGCTGAAGCAAAATCGAGTGAGACAGGCACACGGTGTCCTATATTCCTATTTTTCTCGGTGAATGGAAGTGGGCAGTTCGTAGGCCTGGCCGAGATGATTGGGGAGGTAGATTTCAACAAAGATATGGACTTCTGGCAAGTTGACAAGTGGAGTGGGTTCTTCCCAGTTAAATGGCATATAATAAAGGACGTACCTAACACTCAGTTGCGGCATATTATCCTTGAAAACAATGATAACAGACCTGTAACTTTTACCCGGGACACTCAAGAGATTGGACTGAAGCAAGGTTTGGAAATGCTGAACATATTCAAAACTTATGCACCCAGATCATCTTTGTTAGATGACTTCAATTTCTATGAAAATCGAGAAAAGTCTCTACAAGCCAAAAGGAGCGGTAAACCTGCAACTTTAAAGATTGAAACTTACGATGATGGTGTTATCCCTGAGCATATGAGTGCTGTAGGGGAAGACTTTGAAGCTGAATCAGGTGGGATCGGGATGACTTCTGACCGAACATCTCTCATTTCACTTACTAAAAATCTCTCTCTCAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

473

Amino Acids

52.44

Weight (kDa)

6.36

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 251 - 392 2.3e-45 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1273
AccB1I GGYRCC 1 cut(s) 409
AccBSI CCGCTC 1 cut(s) 1257
AciI CCGC 3 cut(s) 41, 1072, 1257
AclWI GGATC 1 cut(s) 1364
AcoI YGGCCR 2 cut(s) 127, 951
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 4 cut(s) 219, 642, 888, 1163
AcvI CACGTG 1 cut(s) 626
AdeI CACNNNGTG 1 cut(s) 897
AfaI GTAC 2 cut(s) 298, 1056
AfiI CCNNNNNNNGG 3 cut(s) 419, 464, 512
AflIII ACRYGT 1 cut(s) 623
AhdI GACNNNNNGTC 1 cut(s) 627
AjnI CCWGG 3 cut(s) 103, 289, 948
AjuI GAANNNNNNNTTGG 4 cut(s) 668, 700, 1136, 1168
AluBI AGCT 2 cut(s) 203, 1343
AluI AGCT 2 cut(s) 203, 1343
Alw26I GTCTC 2 cut(s) 878, 1242
AlwI GGATC 1 cut(s) 1364
Ama87I CYCGRG 1 cut(s) 1119
AoxI GGCC 5 cut(s) 100, 127, 816, 946, 951
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 1169
AspS9I GGNCC 5 cut(s) 101, 287, 497, 629, 816
AsuC2I CCSGG 3 cut(s) 84, 1120, 1121
AsuHPI GGTGA 2 cut(s) 251, 934
AsuNHI GCTAGC 1 cut(s) 353
AvaI CYCGRG 1 cut(s) 1119
AvaII GGWCC 3 cut(s) 287, 497, 629
AxyI CCTNAGG 1 cut(s) 163
BalI TGGCCA 1 cut(s) 129
BanI GGYRCC 1 cut(s) 409
BbrPI CACGTG 1 cut(s) 626
BbsI GAAGAC 1 cut(s) 1338
BbvI GCAGC 1 cut(s) 187
BccI CCATC 3 cut(s) 119, 398, 1289
BciT130I CCWGG 3 cut(s) 105, 291, 950
BciVI GTATCC 1 cut(s) 446
BcnI CCSGG 3 cut(s) 84, 1120, 1121
BcoDI GTCTC 2 cut(s) 878, 1242
BfaI CTAG 2 cut(s) 309, 354
BfmI CTRYAG 2 cut(s) 249, 1323
BfuAI ACCTGC 1 cut(s) 1273
BfuI GTATCC 1 cut(s) 446
BglII AGATCT 1 cut(s) 635
BisI GCNGC 2 cut(s) 176, 1073
BlsI GCNGC 2 cut(s) 177, 1074
Bme1390I CCNGG 6 cut(s) 84, 105, 291, 950, 1120, 1121
Bme18I GGWCC 3 cut(s) 287, 497, 629
BmeRI GACNNNNNGTC 1 cut(s) 627
BmeT110I CYCGRG 1 cut(s) 1119
BmgT120I GGNCC 5 cut(s) 101, 287, 497, 629, 816
BmiI GGNNCC 2 cut(s) 411, 498
BmrFI CCNGG 6 cut(s) 84, 105, 291, 950, 1120, 1121
BmrI ACTGGG 1 cut(s) 1022
BmsI GCATC 1 cut(s) 853
BmtI GCTAGC 1 cut(s) 357
BmuI ACTGGG 1 cut(s) 1022
BpiI GAAGAC 1 cut(s) 1338
Bpu10I CCTNAGC 1 cut(s) 1308
BpuEI CTTGAG 1 cut(s) 1113
BpuMI CCSGG 3 cut(s) 84, 1120, 1121
BsaAI YACGTR 1 cut(s) 626
BsaJI CCNNGG 4 cut(s) 82, 103, 130, 1119
Bsc4I CCNNNNNNNGG 3 cut(s) 419, 464, 512
Bse1I ACTGG 4 cut(s) 438, 469, 849, 1028
Bse21I CCTNAGG 1 cut(s) 163
BseBI CCWGG 3 cut(s) 105, 291, 950
BseDI CCNNGG 4 cut(s) 82, 103, 130, 1119
BseGI GGATG 2 cut(s) 853, 1368
BseLI CCNNNNNNNGG 3 cut(s) 419, 464, 512
BseMII CTCAG 5 cut(s) 177, 447, 606, 1079, 1299
BseNI ACTGG 4 cut(s) 438, 469, 849, 1028
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 5 cut(s) 102, 129, 818, 948, 953
BshNI GGYRCC 1 cut(s) 409
BsiHKCI CYCGRG 1 cut(s) 1119
BsiSI CCGG 2 cut(s) 84, 1120
BslFI GGGAC 2 cut(s) 236, 1136
BslI CCNNNNNNNGG 3 cut(s) 419, 464, 512
BsmAI GTCTC 2 cut(s) 878, 1242
BsmFI GGGAC 2 cut(s) 236, 1136
BsnI GGCC 5 cut(s) 102, 129, 818, 948, 953
BsoBI CYCGRG 1 cut(s) 1119
Bsp143I GATC 3 cut(s) 635, 1190, 1356
BspACI CCGC 3 cut(s) 41, 1072, 1257
BspANI GGCC 5 cut(s) 102, 129, 818, 948, 953
BspCNI CTCAG 5 cut(s) 176, 446, 607, 1078, 1300
BspLI GGNNCC 2 cut(s) 411, 498
BspMI ACCTGC 1 cut(s) 1273
BspOI GCTAGC 1 cut(s) 357
BspPI GGATC 1 cut(s) 1364
BspT107I GGYRCC 1 cut(s) 409
BsrBI CCGCTC 1 cut(s) 1257
BsrI ACTGG 4 cut(s) 438, 469, 849, 1028
BssECI CCNNGG 4 cut(s) 82, 103, 130, 1119
BssMI GATC 3 cut(s) 635, 1190, 1356
BssT1I CCWWGG 1 cut(s) 130
Bst2UI CCWGG 3 cut(s) 105, 291, 950
Bst4CI ACNGT 3 cut(s) 697, 776, 897
BstBAI YACGTR 1 cut(s) 626
BstC8I GCNNGC 2 cut(s) 355, 820
BstDEI CTNAG 5 cut(s) 163, 433, 615, 1065, 1308
BstENI CCTNNNNNAGG 1 cut(s) 417
BstF5I GGATG 2 cut(s) 853, 1368
BstKTI GATC 3 cut(s) 638, 1193, 1359
BstMAI GTCTC 2 cut(s) 878, 1242
BstMBI GATC 3 cut(s) 635, 1190, 1356
BstNI CCWGG 3 cut(s) 105, 291, 950
BstSCI CCNGG 6 cut(s) 82, 103, 289, 948, 1118, 1119
BstSFI CTRYAG 2 cut(s) 249, 1323
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 1338
BstX2I RGATCY 1 cut(s) 635
BstXI CCANNNNNNTGG 2 cut(s) 137, 1035
BstYI RGATCY 1 cut(s) 635
Bsu36I CCTNAGG 1 cut(s) 163
BsuI GTATCC 1 cut(s) 446
BsuRI GGCC 5 cut(s) 102, 129, 818, 948, 953
BtsCI GGATG 2 cut(s) 853, 1368
BtsIMutI CAGTG 1 cut(s) 781
BveI ACCTGC 1 cut(s) 1273
Cac8I GCNNGC 2 cut(s) 355, 820
Cfr13I GGNCC 5 cut(s) 101, 287, 497, 629, 816
Cfr9I CCCGGG 1 cut(s) 1119
CsiI ACCWGGT 1 cut(s) 289
Csp6I GTAC 2 cut(s) 297, 1055
CspCI CAANNNNNGTGG 2 cut(s) 997, 1032
CviAII CATG 1 cut(s) 219
CviQI GTAC 2 cut(s) 297, 1055
DdeI CTNAG 5 cut(s) 163, 433, 615, 1065, 1308
DpnI GATC 3 cut(s) 637, 1192, 1358
DpnII GATC 3 cut(s) 635, 1190, 1356
DraI TTTAAA 1 cut(s) 1275
DraIII CACNNNGTG 1 cut(s) 897
DriI GACNNNNNGTC 1 cut(s) 627
EaeI YGGCCR 2 cut(s) 127, 951
Eam1105I GACNNNNNGTC 1 cut(s) 627
Eco130I CCWWGG 1 cut(s) 130
Eco147I AGGCCT 1 cut(s) 948
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 3 cut(s) 287, 497, 629
Eco57I CTGAAG 4 cut(s) 219, 642, 888, 1163
Eco72I CACGTG 1 cut(s) 626
Eco81I CCTNAGG 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 1119
EcoNI CCTNNNNNAGG 1 cut(s) 417
EcoRII CCWGG 3 cut(s) 103, 289, 948
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 1 cut(s) 222
FaqI GGGAC 2 cut(s) 236, 1136
FatI CATG 1 cut(s) 218
FauI CCCGC 1 cut(s) 34
FauNDI CATATG 2 cut(s) 97, 1314
Fnu4HI GCNGC 2 cut(s) 176, 1073
FokI GGATG 2 cut(s) 860, 1375
Fsp4HI GCNGC 2 cut(s) 176, 1073
FspBI CTAG 2 cut(s) 309, 354
GluI GCNGC 2 cut(s) 176, 1073
HaeIII GGCC 5 cut(s) 102, 129, 818, 948, 953
HapII CCGG 2 cut(s) 84, 1120
Hin1II CATG 1 cut(s) 222
HincII GTYRAC 3 cut(s) 143, 621, 1006
HindII GTYRAC 3 cut(s) 143, 621, 1006
HinfI GANTC 4 cut(s) 564, 605, 662, 1346
HpaII CCGG 2 cut(s) 84, 1120
HphI GGTGA 2 cut(s) 251, 934
Hpy166II GTNNAC 4 cut(s) 143, 621, 1006, 1262
Hpy188I TCNGA 7 cut(s) 55, 199, 427, 661, 732, 828, 1372
Hpy188III TCNNGA 5 cut(s) 285, 860, 1130, 1229, 1360
Hpy8I GTNNAC 4 cut(s) 143, 621, 1006, 1262
HpyAV CCTTC 6 cut(s) 387, 442, 462, 487, 666, 670
HpyCH4III ACNGT 3 cut(s) 697, 776, 897
HpyCH4IV ACGT 3 cut(s) 326, 625, 1053
HpyCH4V TGCA 4 cut(s) 20, 175, 1184, 1268
HpyF3I CTNAG 5 cut(s) 163, 433, 615, 1065, 1308
HpySE526I ACGT 3 cut(s) 326, 625, 1053
Hsp92II CATG 1 cut(s) 222
Kzo9I GATC 3 cut(s) 635, 1190, 1356
LmnI GCTCC 1 cut(s) 1254
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 853
MabI ACCWGGT 1 cut(s) 289
MaeI CTAG 2 cut(s) 309, 354
MaeII ACGT 3 cut(s) 326, 625, 1053
MaeIII GTNAC 1 cut(s) 1108
MalI GATC 3 cut(s) 637, 1192, 1358
MbiI CCGCTC 1 cut(s) 1257
MboI GATC 3 cut(s) 635, 1190, 1356
MboII GAAGA 4 cut(s) 150, 791, 1015, 1343
MflI RGATCY 1 cut(s) 635
MlsI TGGCCA 1 cut(s) 129
MluCI AATT 3 cut(s) 31, 359, 1213
MluNI TGGCCA 1 cut(s) 129
MlyI GAGTC 1 cut(s) 656
MnlI CCTC 8 cut(s) 172, 423, 469, 516, 534, 589, 619, 961
Mox20I TGGCCA 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 1169
MscI TGGCCA 1 cut(s) 129
MseI TTAA 7 cut(s) 401, 510, 548, 765, 801, 1032, 1274
MslI CAYNNNNRTG 2 cut(s) 15, 1317
Msp20I TGGCCA 1 cut(s) 129
MspI CCGG 2 cut(s) 84, 1120
MspR9I CCNGG 6 cut(s) 84, 105, 291, 950, 1120, 1121
MvaI CCWGG 3 cut(s) 105, 291, 950
NciI CCSGG 3 cut(s) 84, 1120, 1121
NdeI CATATG 2 cut(s) 97, 1314
NdeII GATC 3 cut(s) 635, 1190, 1356
NheI GCTAGC 1 cut(s) 353
NlaIII CATG 1 cut(s) 222
NlaIV GGNNCC 2 cut(s) 411, 498
NmeAIII GCCGAG 1 cut(s) 979
PceI AGGCCT 1 cut(s) 948
PdmI GAANNNNTTC 1 cut(s) 1169
PfeI GAWTC 3 cut(s) 564, 605, 1346
PkrI GCNGC 2 cut(s) 177, 1074
PleI GAGTC 1 cut(s) 656
PmaCI CACGTG 1 cut(s) 626
PmlI CACGTG 1 cut(s) 626
PpsI GAGTC 1 cut(s) 656
Ppu21I YACGTR 1 cut(s) 626
Psp6I CCWGG 3 cut(s) 103, 289, 948
PspCI CACGTG 1 cut(s) 626
PspGI CCWGG 3 cut(s) 103, 289, 948
PspN4I GGNNCC 2 cut(s) 411, 498
PspPI GGNCC 5 cut(s) 101, 287, 497, 629, 816
PsuI RGATCY 1 cut(s) 635
RsaI GTAC 2 cut(s) 298, 1056
RsaNI GTAC 2 cut(s) 297, 1055
RseI CAYNNNNRTG 2 cut(s) 15, 1317
SaqAI TTAA 7 cut(s) 401, 510, 548, 765, 801, 1032, 1274
SatI GCNGC 2 cut(s) 176, 1073
Sau3AI GATC 3 cut(s) 635, 1190, 1356
Sau96I GGNCC 5 cut(s) 101, 287, 497, 629, 816
SchI GAGTC 1 cut(s) 656
ScrFI CCNGG 6 cut(s) 84, 105, 291, 950, 1120, 1121
SexAI ACCWGGT 1 cut(s) 289
SfaNI GCATC 1 cut(s) 853
SfcI CTRYAG 2 cut(s) 249, 1323
SinI GGWCC 3 cut(s) 287, 497, 629
SmaI CCCGGG 1 cut(s) 1121
SmiMI CAYNNNNRTG 2 cut(s) 15, 1317
SmlI CTYRAG 1 cut(s) 1128
SmoI CTYRAG 1 cut(s) 1128
Sse9I AATT 3 cut(s) 31, 359, 1213
SseBI AGGCCT 1 cut(s) 948
SsiI CCGC 3 cut(s) 41, 1072, 1257
SspMI CTAG 2 cut(s) 309, 354
StuI AGGCCT 1 cut(s) 948
StyD4I CCNGG 6 cut(s) 82, 103, 289, 948, 1118, 1119
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 3 cut(s) 697, 776, 897
TaiI ACGT 3 cut(s) 329, 628, 1056
TaqI TCGA 2 cut(s) 878, 1228
TaqII GACCGA 1 cut(s) 1389
TasI AATT 3 cut(s) 31, 359, 1213
TauI GCSGC 1 cut(s) 1075
TfiI GAWTC 3 cut(s) 564, 605, 1346
Tru1I TTAA 7 cut(s) 401, 510, 548, 765, 801, 1032, 1274
Tru9I TTAA 7 cut(s) 401, 510, 548, 765, 801, 1032, 1274
TscAI CASTG 1 cut(s) 781
TseI GCWGC 1 cut(s) 175
TspDTI ATGAA 3 cut(s) 207, 756, 1236
TspGWI ACGGA 1 cut(s) 489
TspMI CCCGGG 1 cut(s) 1119
TspRI CASTG 1 cut(s) 781
VpaK11BI GGWCC 3 cut(s) 287, 497, 629
XagI CCTNNNNNAGG 1 cut(s) 417
XapI RAATTY 1 cut(s) 359
XmaI CCCGGG 1 cut(s) 1119
XmnI GAANNNNTTC 1 cut(s) 1169
XspI CTAG 2 cut(s) 309, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.