Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004199

Physical Location & Seq

Genomic Coordinates Reverse (-)

20540732 .. 20541748

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCACGCTAATAGTTCACATACGGGTGCTCAGTCAGACAGTGGTTCAATGTTGTATTACCTTCCCAGCTATAACCCATATGCCCCAGGAACTCTAATGGGAATGGACGGGCAAGGTGTTGGCCAACAGCAGTATTATCCTTCCTCAGGATATATGCAACCACCTATTTCATACGGATCAGAAGCTGCGCCTAGTTATTCTTGGGACTCAACATTTGGTGGAGACGTCTCGACTGCAGCAAATGCTGGTTCTGGAAATGTTAAGGCTGGACCTGGGTCAACTGCTTTATCTAGGTCAAATGGTTTTACATCGACTAAAGCCAGTGGCCCTCTTGCAAGCAAGTTTTCCAAGCCTCTCCCTCTGACACAACCTGGCAAGTCATTAAACAAGGTTCCTCATCTGGGCAATGATTTTTCAGCGGGTCTTTTGAAGGGCTACCCACCAGCAGGAAGATTCTCATCATTTACTAACCAGAAATATGGTTTGTTTCCTCCTACTGGTCAAACATACTACCAATCAAATGGTAGAATTCTGAATGGAAATGATAGATTCAAGTCAAGGGAAAAATATAACAGGAATGAAGATTTTGAATCTTCAGCTGAGTTGACACGTGGTCCAAGGTCCCGCAACAATAGTTCTCCATTAGACTCACCAATTGAGAAGGAAGAACTAGGAATCACTGTTCGTAGGGATAAATATAACTTACCAGATTTTCAGACAGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

243

Amino Acids

26.09

Weight (kDa)

9.24

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09810 AT1G09810 AT1G09810
fragaria_vesca	FvH4_5g30420 FvH4_5g30420 FvH4_5g30420 FvH4_5g30420 FvH4_5g30420 FvH4_5g30420 FvH4_5g30420
malus_domestica	MD08G1241700.v1.1 MD15G1435500.v1.1
prunus_persica	Prupe.1G579100_v2.0.a1 Prupe.1G579100_v2.0.a1 Prupe.1G579100_v2.0.a1 Prupe.1G579100_v2.0.a1 Prupe.1G579100_v2.0.a1 Prupe.1G579100_v2.0.a1 Prupe.1G579100_v2.0.a1 Prupe.1G579100_v2.0.a1
pyrus_communis	pycom08g20970 pycom15g38420
rosa_chinensis	RchiOBHm_Chr7g0224861
rosa_laevigata	RLG00000001848
rosa_multiflora	Rmu_sc0000307.1_g000004
rosa_roxburghii	Rroxscaffold_3G00234320
rosa_rugosa	Rorug07G0226600 Rorug07G0226600
rosa_samantha	Rh7AG376800 Rh7BG362100 Rh7CG395300 Rh7DG372100
rosa_wichuraiana	Rw7G031390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	228
AciI	CCGC	2 cut(s)	419, 625
AclWI	GGATC	1 cut(s)	184
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	579
AcvI	CACGTG	1 cut(s)	611
AcyI	GRCGYC	1 cut(s)	225
AfiI	CCNNNNNNNGG	4 cut(s)	146, 401, 446, 497
AflIII	ACRYGT	1 cut(s)	608
AgsI	TTSAA	4 cut(s)	48, 430, 553, 590
AhdI	GACNNNNNGTC	1 cut(s)	612
AjnI	CCWGG	3 cut(s)	85, 271, 370
AloI	GAACNNNNNNTCC	2 cut(s)	666, 698
AluBI	AGCT	3 cut(s)	69, 185, 599
AluI	AGCT	3 cut(s)	69, 185, 599
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	2 cut(s)	216, 232
AlwI	GGATC	1 cut(s)	184
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	121, 325
ApeKI	GCWGC	2 cut(s)	185, 236
ApoI	RAATTY	1 cut(s)	528
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	4 cut(s)	269, 326, 614, 621
AsuHPI	GGTGA	1 cut(s)	642
AvaII	GGWCC	3 cut(s)	269, 614, 621
AxyI	CCTNAGG	1 cut(s)	145
BalI	TGGCCA	1 cut(s)	123
BbrPI	CACGTG	1 cut(s)	611
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	172, 248
BciT130I	CCWGG	3 cut(s)	87, 273, 372
BcoDI	GTCTC	2 cut(s)	216, 232
BfaI	CTAG	3 cut(s)	192, 291, 671
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	2 cut(s)	186, 237
BlsI	GCNGC	2 cut(s)	187, 238
Bme1390I	CCNGG	3 cut(s)	87, 273, 372
Bme18I	GGWCC	3 cut(s)	269, 614, 621
BmeRI	GACNNNNNGTC	1 cut(s)	612
BmgT120I	GGNCC	4 cut(s)	269, 326, 614, 621
BmiI	GGNNCC	2 cut(s)	393, 623
BmrFI	CCNGG	3 cut(s)	87, 273, 372
BoxI	GACNNNNGTC	1 cut(s)	274
Bsa29I	ATCGAT	1 cut(s)	724
BsaAI	YACGTR	1 cut(s)	611
BsaBI	GATNNNNATC	1 cut(s)	457
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	3 cut(s)	85, 272, 617
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 401, 446, 497
Bse1I	ACTGG	2 cut(s)	321, 502
Bse21I	CCTNAGG	1 cut(s)	145
Bse3DI	GCAATG	1 cut(s)	412
Bse8I	GATNNNNATC	1 cut(s)	457
BseBI	CCWGG	3 cut(s)	87, 273, 372
BseCI	ATCGAT	1 cut(s)	724
BseDI	CCNNGG	3 cut(s)	85, 272, 617
BseJI	GATNNNNATC	1 cut(s)	457
BseLI	CCNNNNNNNGG	4 cut(s)	146, 401, 446, 497
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	3 cut(s)	44, 159, 591
BseNI	ACTGG	2 cut(s)	321, 502
BseXI	GCAGC	2 cut(s)	172, 248
BseYI	CCCAGC	1 cut(s)	65
BshFI	GGCC	2 cut(s)	123, 327
BshVI	ATCGAT	1 cut(s)	724
BsiHKAI	GWGCWC	1 cut(s)	31
BslFI	GGGAC	2 cut(s)	218, 607
BslI	CCNNNNNNNGG	4 cut(s)	146, 401, 446, 497
BsmAI	GTCTC	2 cut(s)	216, 232
BsmBI	CGTCTC	2 cut(s)	216, 232
BsmFI	GGGAC	2 cut(s)	218, 607
BsnI	GGCC	2 cut(s)	123, 327
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	176, 721
BspACI	CCGC	2 cut(s)	419, 625
BspANI	GGCC	2 cut(s)	123, 327
BspCNI	CTCAG	3 cut(s)	43, 158, 592
BspDI	ATCGAT	1 cut(s)	724
BspLI	GGNNCC	2 cut(s)	393, 623
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	321, 502
BssECI	CCNNGG	3 cut(s)	85, 272, 617
BssMI	GATC	2 cut(s)	176, 721
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	617
Bst2UI	CCWGG	3 cut(s)	87, 273, 372
Bst4CI	ACNGT	2 cut(s)	41, 682
BstACI	GRCGYC	1 cut(s)	225
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstBAI	YACGTR	1 cut(s)	611
BstC8I	GCNNGC	2 cut(s)	6, 337
BstDEI	CTNAG	3 cut(s)	30, 145, 600
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	2 cut(s)	179, 724
BstMAI	GTCTC	2 cut(s)	216, 232
BstMBI	GATC	2 cut(s)	176, 721
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	3 cut(s)	87, 273, 372
BstPAI	GACNNNNGTC	1 cut(s)	274
BstSCI	CCNGG	3 cut(s)	85, 271, 370
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	172, 248
BstXI	CCANNNNNNTGG	2 cut(s)	479, 521
Bsu15I	ATCGAT	1 cut(s)	724
Bsu36I	CCTNAGG	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	123, 327
BsuTUI	ATCGAT	1 cut(s)	724
BtsIMutI	CAGTG	3 cut(s)	46, 328, 678
Cac8I	GCNNGC	2 cut(s)	6, 337
CaiI	CAGNNNCTG	1 cut(s)	185
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	4 cut(s)	269, 326, 614, 621
ClaI	ATCGAT	1 cut(s)	724
CviJI	RGCY	9 cut(s)	69, 123, 185, 266, 320, 327, 352, 435, 599
CviKI_1	RGCY	9 cut(s)	69, 123, 185, 266, 320, 327, 352, 435, 599
DdeI	CTNAG	3 cut(s)	30, 145, 600
DpnI	GATC	2 cut(s)	178, 723
DpnII	GATC	2 cut(s)	176, 721
DriI	GACNNNNNGTC	1 cut(s)	612
EaeI	YGGCCR	1 cut(s)	121
Eam1105I	GACNNNNNGTC	1 cut(s)	612
Eco130I	CCWWGG	1 cut(s)	617
Eco47I	GGWCC	3 cut(s)	269, 614, 621
Eco57I	CTGAAG	1 cut(s)	579
Eco72I	CACGTG	1 cut(s)	611
Eco81I	CCTNAGG	1 cut(s)	145
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	621
EcoRI	GAATTC	1 cut(s)	528
EcoRII	CCWGG	3 cut(s)	85, 271, 370
EcoT14I	CCWWGG	1 cut(s)	617
ErhI	CCWWGG	1 cut(s)	617
Esp3I	CGTCTC	2 cut(s)	216, 232
FaqI	GGGAC	2 cut(s)	218, 607
FauI	CCCGC	2 cut(s)	412, 632
FauNDI	CATATG	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	186, 237
Fsp4HI	GCNGC	2 cut(s)	186, 237
FspBI	CTAG	3 cut(s)	192, 291, 671
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	2 cut(s)	186, 237
GsaI	CCCAGC	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	123, 327
HhaI	GCGC	1 cut(s)	190
Hin1I	GRCGYC	1 cut(s)	225
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	2 cut(s)	279, 606
HindII	GTYRAC	2 cut(s)	279, 606
HinfI	GANTC	6 cut(s)	206, 453, 549, 590, 647, 675
HphI	GGTGA	1 cut(s)	642
Hpy166II	GTNNAC	3 cut(s)	17, 279, 606
Hpy188I	TCNGA	5 cut(s)	37, 181, 363, 534, 717
Hpy188III	TCNNGA	3 cut(s)	147, 229, 252
Hpy8I	GTNNAC	3 cut(s)	17, 279, 606
HpyAV	CCTTC	4 cut(s)	71, 150, 424, 655
HpyCH4III	ACNGT	2 cut(s)	41, 682
HpyCH4IV	ACGT	2 cut(s)	225, 610
HpyCH4V	TGCA	4 cut(s)	4, 157, 236, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	3 cut(s)	30, 145, 600
HpySE526I	ACGT	2 cut(s)	225, 610
Hsp92I	GRCGYC	1 cut(s)	225
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	2 cut(s)	176, 721
Lsp1109I	GCAGC	2 cut(s)	172, 248
MaeI	CTAG	3 cut(s)	192, 291, 671
MaeII	ACGT	2 cut(s)	225, 610
MalI	GATC	2 cut(s)	178, 723
MboI	GATC	2 cut(s)	176, 721
MboII	GAAGA	4 cut(s)	462, 585, 593, 677
MfeI	CAATTG	1 cut(s)	654
MhlI	GDGCHC	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	2 cut(s)	528, 654
MluNI	TGGCCA	1 cut(s)	123
MlyI	GAGTC	2 cut(s)	200, 641
MnlI	CCTC	6 cut(s)	154, 339, 363, 369, 405, 501
Mox20I	TGGCCA	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	123
MseI	TTAA	2 cut(s)	261, 383
MslI	CAYNNNNRTG	1 cut(s)	24
Msp20I	TGGCCA	1 cut(s)	123
MspA1I	CMGCKG	2 cut(s)	419, 599
MspR9I	CCNGG	3 cut(s)	87, 273, 372
MunI	CAATTG	1 cut(s)	654
MvaI	CCWGG	3 cut(s)	87, 273, 372
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeI	CATATG	1 cut(s)	79
NdeII	GATC	2 cut(s)	176, 721
NlaIV	GGNNCC	2 cut(s)	393, 623
PfeI	GAWTC	4 cut(s)	453, 549, 590, 675
PkrI	GCNGC	2 cut(s)	187, 238
PleI	GAGTC	2 cut(s)	200, 641
PmaCI	CACGTG	1 cut(s)	611
PmlI	CACGTG	1 cut(s)	611
PpsI	GAGTC	2 cut(s)	200, 641
Ppu21I	YACGTR	1 cut(s)	611
PpuMI	RGGWCCY	1 cut(s)	621
PshAI	GACNNNNGTC	1 cut(s)	274
Psp5II	RGGWCCY	1 cut(s)	621
Psp6I	CCWGG	3 cut(s)	85, 271, 370
PspCI	CACGTG	1 cut(s)	611
PspFI	CCCAGC	1 cut(s)	65
PspGI	CCWGG	3 cut(s)	85, 271, 370
PspN4I	GGNNCC	2 cut(s)	393, 623
PspPI	GGNCC	4 cut(s)	269, 326, 614, 621
PspPPI	RGGWCCY	1 cut(s)	621
PstI	CTGCAG	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	599
RseI	CAYNNNNRTG	1 cut(s)	24
SaqAI	TTAA	2 cut(s)	261, 383
SatI	GCNGC	2 cut(s)	186, 237
Sau3AI	GATC	2 cut(s)	176, 721
Sau96I	GGNCC	4 cut(s)	269, 326, 614, 621
SchI	GAGTC	2 cut(s)	200, 641
ScrFI	CCNGG	3 cut(s)	87, 273, 372
SduI	GDGCHC	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	3 cut(s)	269, 614, 621
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	2 cut(s)	528, 654
SsiI	CCGC	2 cut(s)	419, 625
SspMI	CTAG	3 cut(s)	192, 291, 671
StyD4I	CCNGG	3 cut(s)	85, 271, 370
StyI	CCWWGG	1 cut(s)	617
TaaI	ACNGT	2 cut(s)	41, 682
TaiI	ACGT	2 cut(s)	228, 613
TaqI	TCGA	3 cut(s)	230, 311, 724
TasI	AATT	2 cut(s)	528, 654
TfiI	GAWTC	4 cut(s)	453, 549, 590, 675
Tru1I	TTAA	2 cut(s)	261, 383
Tru9I	TTAA	2 cut(s)	261, 383
TscAI	CASTG	3 cut(s)	46, 328, 685
TseI	GCWGC	2 cut(s)	185, 236
TspDTI	ATGAA	2 cut(s)	159, 594
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	3 cut(s)	46, 328, 685
VpaK11BI	GGWCC	3 cut(s)	269, 614, 621
XagI	CCTNNNNNAGG	1 cut(s)	144
XapI	RAATTY	1 cut(s)	528
XspI	CTAG	3 cut(s)	192, 291, 671
ZraI	GACGTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.