Rh7BG362100

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004199
Physical Location & Seq
Forward (+)
38462600 .. 38468152
5553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG362100.1

Sequence Viewer

Length: 1344 bp
ATGGCCGGCGAAAAGAAGATTGAGAAAGCTGAGCCTGTAGCCACTGTGTTGGCCTCAGATTCTGTTTCCGGATTAGGAGAGCAACAACTGGTTTCTGGGAAAGATGGAATACCATATCATTCGATCTCCTCCATGTCTTCTTCGAGGGATGCCACCGACAGCATGAAAGGTGAGACTGATCAAGAGTCGGTTGGAGAGCATGGTGTTTACTATCCACCCACTAGCTGTTACAATTATTATTATCCAGGATATAATGGATCCTATACGCAGTTGGACGAACATCGCTATGCAAATGCTAATAATTCACAGGCGGGTGTGCAGTCAGACAATGGTTCAATGGTCTATTATCTCCCCGGCTATAATCCATATGCCCCTGGAACTCTTATGGGTGTTGATGGCCAAGGTGTTGGTCAACAGCAGTATTTTTCTTCCTCAGGTTATATGCAGCCACCTGTTTCGTATGGTTCAGAAGCTATGCCTTGTTATTCATGGGACACAACATTTTCTGGCGATATCTCTACAGCAACAAACTCTGGTTTTGGAAATCTAAAGTCTGGACCAGGTGGTACTGCTTTATCTAGGTCAAGTGGCTTTATGTCGGGCAAAACGAATGGAAATCTTGCTAGCAAATTTTCCAAGTCTTTCCCTTCTACACAACCCATCAAATCATTAAACAAGGTGCCTCATTTAGGTTCTGATTTCTCAGCCAGTCTTTTGAAGGGATACCCCTCAACTGGAAGGTTCTCATCATTCACTAACCAGAAGGGTCTGTTTCCTCTTAATGGTCAAACAAACTACAAATCTAATGGGAGGATATTAAATGGAAACGACAGATTCAAGTCAAGGGAAAAATATAACAGAAATGAAGATTTTGAATCCTCAACTGAGTTGACACGTGGTCCAAGATCTCGCAGCAAGATTACTCCTTCAGACTCATCAGTTGAGAAGGAAGTATTGGGATTTACAGTCAGTAGAGATAAATACAACCTACCAGATTTTCAGACTGATTATGAAAGTGCGAAGTTCTATGTCATTAAGTCTTACAGTGAAGATGATGTCCATAAGAGCATTAAATATGATGTTTGGGCCAGCACTCCGAATGGCAATAAGAAACTGGATGTAGCATTTCGTGATACTGAAGCAAAATCGAGTGAGACAGGCACACGGTGTCCTATCTTCCTATTTTTCTCGGTAATAATTCAGAAAAGAGTTGATATGGATTCACATGTGTTAGTTTTCTTGTTTTTCAATGATTCGCCTGTTTTGAGTTTGCCGAATGTTAAATATTTGATAGCTGCTCTGGAAAATCCACTTAATATTAGAAGATCAGTAGTGCAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

447

Amino Acids

49.08

Weight (kDa)

7.01

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 340 - 399 4.7e-13 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 679
AccIII TCCGGA 1 cut(s) 68
AciI CCGC 1 cut(s) 311
AclWI GGATC 2 cut(s) 252, 265
AcoI YGGCCR 2 cut(s) 3, 397
AcsI RAATTY 2 cut(s) 629, 1338
AcuI CTGAAG 2 cut(s) 912, 1158
AcvI CACGTG 1 cut(s) 896
AdeI CACNNNGTG 1 cut(s) 1167
AfaI GTAC 1 cut(s) 568
AfiI CCNNNNNNNGG 3 cut(s) 689, 734, 782
AflIII ACRYGT 2 cut(s) 893, 1225
AgsI TTSAA 5 cut(s) 336, 718, 838, 875, 1249
AhdI GACNNNNNGTC 1 cut(s) 897
AjnI CCWGG 3 cut(s) 244, 373, 559
AjuI GAANNNNNNNTTGG 2 cut(s) 938, 970
AluBI AGCT 4 cut(s) 29, 225, 473, 1295
AluI AGCT 4 cut(s) 29, 225, 473, 1295
Alw26I GTCTC 2 cut(s) 167, 1148
AlwI GGATC 2 cut(s) 252, 265
AlwNI CAGNNNCTG 1 cut(s) 62
Aor13HI TCCGGA 1 cut(s) 68
AoxI GGCC 4 cut(s) 3, 51, 397, 1086
ApeKI GCWGC 3 cut(s) 445, 912, 1295
ApoI RAATTY 2 cut(s) 629, 1338
AspS9I GGNCC 3 cut(s) 557, 899, 1086
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 182
AsuNHI GCTAGC 1 cut(s) 623
AvaII GGWCC 2 cut(s) 557, 899
AxyI CCTNAGG 1 cut(s) 433
BalI TGGCCA 1 cut(s) 399
BamHI GGATCC 1 cut(s) 257
BanI GGYRCC 1 cut(s) 679
BbrPI CACGTG 1 cut(s) 896
BbsI GAAGAC 1 cut(s) 129
BbvI GCAGC 3 cut(s) 457, 924, 1282
BccI CCATC 3 cut(s) 98, 389, 668
BciT130I CCWGG 3 cut(s) 246, 375, 561
BciVI GTATCC 1 cut(s) 716
BclI TGATCA 1 cut(s) 178
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 2 cut(s) 167, 1148
BfaI CTAG 3 cut(s) 222, 579, 624
BfmI CTRYAG 2 cut(s) 36, 519
BfuI GTATCC 1 cut(s) 716
BglII AGATCT 1 cut(s) 905
BisI GCNGC 3 cut(s) 446, 913, 1296
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 3 cut(s) 447, 914, 1297
Bme1390I CCNGG 4 cut(s) 246, 354, 375, 561
Bme18I GGWCC 2 cut(s) 557, 899
BmeRI GACNNNNNGTC 1 cut(s) 897
BmgT120I GGNCC 3 cut(s) 557, 899, 1086
BmiI GGNNCC 2 cut(s) 259, 681
BmrFI CCNGG 4 cut(s) 246, 354, 375, 561
BmsI GCATC 1 cut(s) 139
BmtI GCTAGC 1 cut(s) 627
BpiI GAAGAC 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 354
BsaAI YACGTR 1 cut(s) 896
BsaJI CCNNGG 3 cut(s) 352, 373, 400
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 3 cut(s) 689, 734, 782
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 4 cut(s) 93, 708, 739, 1119
Bse21I CCTNAGG 1 cut(s) 433
BseAI TCCGGA 1 cut(s) 68
BseBI CCWGG 3 cut(s) 246, 375, 561
BseDI CCNNGG 3 cut(s) 352, 373, 400
BseGI GGATG 2 cut(s) 154, 1123
BseLI CCNNNNNNNGG 3 cut(s) 689, 734, 782
BseMII CTCAG 5 cut(s) 21, 69, 447, 717, 876
BseNI ACTGG 4 cut(s) 93, 708, 739, 1119
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 3 cut(s) 457, 924, 1282
BsgI GTGCAG 1 cut(s) 338
BshFI GGCC 4 cut(s) 5, 53, 399, 1088
BshNI GGYRCC 1 cut(s) 679
BsiSI CCGG 3 cut(s) 6, 69, 354
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 3 cut(s) 689, 734, 782
BsmAI GTCTC 2 cut(s) 167, 1148
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 4 cut(s) 5, 53, 399, 1088
Bsp13I TCCGGA 1 cut(s) 68
Bsp143I GATC 5 cut(s) 123, 178, 257, 905, 1325
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 1 cut(s) 311
BspANI GGCC 4 cut(s) 5, 53, 399, 1088
BspCNI CTCAG 5 cut(s) 22, 68, 446, 716, 877
BspEI TCCGGA 1 cut(s) 68
BspLI GGNNCC 2 cut(s) 259, 681
BspOI GCTAGC 1 cut(s) 627
BspPI GGATC 2 cut(s) 252, 265
BspT107I GGYRCC 1 cut(s) 679
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 4 cut(s) 93, 708, 739, 1119
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 3 cut(s) 352, 373, 400
BssMI GATC 5 cut(s) 123, 178, 257, 905, 1325
BssT1I CCWWGG 1 cut(s) 400
Bst2UI CCWGG 3 cut(s) 246, 375, 561
Bst4CI ACNGT 4 cut(s) 46, 967, 1046, 1167
BstBAI YACGTR 1 cut(s) 896
BstC8I GCNNGC 3 cut(s) 7, 625, 1090
BstDEI CTNAG 5 cut(s) 30, 55, 433, 703, 885
BstENI CCTNNNNNAGG 1 cut(s) 687
BstF5I GGATG 2 cut(s) 154, 1123
BstKTI GATC 5 cut(s) 126, 181, 260, 908, 1328
BstMAI GTCTC 2 cut(s) 167, 1148
BstMBI GATC 5 cut(s) 123, 178, 257, 905, 1325
BstNI CCWGG 3 cut(s) 246, 375, 561
BstNSI RCATGY 1 cut(s) 1229
BstSCI CCNGG 4 cut(s) 244, 352, 373, 559
BstSFI CTRYAG 2 cut(s) 36, 519
BstV1I GCAGC 3 cut(s) 457, 924, 1282
BstV2I GAAGAC 1 cut(s) 129
BstX2I RGATCY 2 cut(s) 257, 905
BstXI CCANNNNNNTGG 2 cut(s) 49, 407
BstYI RGATCY 2 cut(s) 257, 905
Bsu36I CCTNAGG 1 cut(s) 433
BsuI GTATCC 1 cut(s) 716
BsuRI GGCC 4 cut(s) 5, 53, 399, 1088
BtgZI GCGATG 1 cut(s) 266
BtsCI GGATG 2 cut(s) 154, 1123
BtsIMutI CAGTG 2 cut(s) 42, 1051
Cac8I GCNNGC 3 cut(s) 7, 625, 1090
CaiI CAGNNNCTG 1 cut(s) 62
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 3 cut(s) 557, 899, 1086
CsiI ACCWGGT 1 cut(s) 559
Csp6I GTAC 1 cut(s) 567
CviAII CATG 5 cut(s) 133, 163, 200, 489, 1226
CviQI GTAC 1 cut(s) 567
DdeI CTNAG 5 cut(s) 30, 55, 433, 703, 885
DpnI GATC 5 cut(s) 125, 180, 259, 907, 1327
DpnII GATC 5 cut(s) 123, 178, 257, 905, 1325
DraIII CACNNNGTG 1 cut(s) 1167
DriI GACNNNNNGTC 1 cut(s) 897
EaeI YGGCCR 2 cut(s) 3, 397
Eam1105I GACNNNNNGTC 1 cut(s) 897
Eco130I CCWWGG 1 cut(s) 400
Eco32I GATATC 1 cut(s) 514
Eco47I GGWCC 2 cut(s) 557, 899
Eco57I CTGAAG 2 cut(s) 912, 1158
Eco72I CACGTG 1 cut(s) 896
Eco81I CCTNAGG 1 cut(s) 433
EcoNI CCTNNNNNAGG 1 cut(s) 687
EcoRII CCWGG 3 cut(s) 244, 373, 559
EcoRV GATATC 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 5 cut(s) 136, 166, 203, 492, 1229
FaqI GGGAC 1 cut(s) 506
FatI CATG 5 cut(s) 132, 162, 199, 488, 1225
FauI CCCGC 1 cut(s) 304
FauNDI CATATG 1 cut(s) 367
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 3 cut(s) 446, 913, 1296
FokI GGATG 2 cut(s) 161, 1130
Fsp4HI GCNGC 3 cut(s) 446, 913, 1296
FspBI CTAG 3 cut(s) 222, 579, 624
GluI GCNGC 3 cut(s) 446, 913, 1296
HaeIII GGCC 4 cut(s) 5, 53, 399, 1088
HapII CCGG 3 cut(s) 6, 69, 354
Hin1II CATG 5 cut(s) 136, 166, 203, 492, 1229
HincII GTYRAC 2 cut(s) 413, 891
HindII GTYRAC 2 cut(s) 413, 891
HinfI GANTC 7 cut(s) 59, 185, 834, 875, 932, 1220, 1253
HpaII CCGG 3 cut(s) 6, 69, 354
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 3 cut(s) 208, 413, 891
Hpy188I TCNGA 8 cut(s) 58, 325, 469, 697, 931, 1002, 1098, 1203
Hpy188III TCNNGA 5 cut(s) 69, 182, 555, 1130, 1301
Hpy8I GTNNAC 3 cut(s) 208, 413, 891
HpyAV CCTTC 6 cut(s) 657, 712, 732, 757, 936, 940
HpyCH4III ACNGT 4 cut(s) 46, 967, 1046, 1167
HpyCH4IV ACGT 1 cut(s) 895
HpyCH4V TGCA 4 cut(s) 290, 319, 445, 1336
HpyF3I CTNAG 5 cut(s) 30, 55, 433, 703, 885
HpySE526I ACGT 1 cut(s) 895
Hsp92II CATG 5 cut(s) 136, 166, 203, 492, 1229
Kpn2I TCCGGA 1 cut(s) 68
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 5 cut(s) 123, 178, 257, 905, 1325
Lsp1109I GCAGC 3 cut(s) 457, 924, 1282
LweI GCATC 1 cut(s) 139
MabI ACCWGGT 1 cut(s) 559
MaeI CTAG 3 cut(s) 222, 579, 624
MaeII ACGT 1 cut(s) 895
MaeIII GTNAC 1 cut(s) 227
MalI GATC 5 cut(s) 125, 180, 259, 907, 1327
MboI GATC 5 cut(s) 123, 178, 257, 905, 1325
MboII GAAGA 8 cut(s) 28, 129, 132, 420, 878, 1061, 1168, 1335
MflI RGATCY 2 cut(s) 257, 905
MlsI TGGCCA 1 cut(s) 399
MluCI AATT 5 cut(s) 232, 301, 629, 1197, 1338
MluNI TGGCCA 1 cut(s) 399
MlyI GAGTC 2 cut(s) 194, 926
MmeI TCCRAC 2 cut(s) 172, 252
MnlI CCTC 9 cut(s) 64, 138, 139, 442, 693, 739, 786, 804, 889
Mox20I TGGCCA 1 cut(s) 399
MroI TCCGGA 1 cut(s) 68
MroNI GCCGGC 1 cut(s) 5
MscI TGGCCA 1 cut(s) 399
MseI TTAA 7 cut(s) 671, 780, 818, 1035, 1071, 1281, 1314
MslI CAYNNNNRTG 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 399
MspI CCGG 3 cut(s) 6, 69, 354
MspR9I CCNGG 4 cut(s) 246, 354, 375, 561
MvaI CCWGG 3 cut(s) 246, 375, 561
NaeI GCCGGC 1 cut(s) 7
NciI CCSGG 1 cut(s) 354
NdeI CATATG 1 cut(s) 367
NdeII GATC 5 cut(s) 123, 178, 257, 905, 1325
NgoMIV GCCGGC 1 cut(s) 5
NheI GCTAGC 1 cut(s) 623
NlaIII CATG 5 cut(s) 136, 166, 203, 492, 1229
NlaIV GGNNCC 2 cut(s) 259, 681
NspI RCATGY 1 cut(s) 1229
PciI ACATGT 1 cut(s) 1225
PcsI WCGNNNNNNNCGW 1 cut(s) 605
PdiI GCCGGC 1 cut(s) 7
PfeI GAWTC 5 cut(s) 59, 834, 875, 1220, 1253
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 3 cut(s) 447, 914, 1297
PleI GAGTC 2 cut(s) 193, 926
PmaCI CACGTG 1 cut(s) 896
PmlI CACGTG 1 cut(s) 896
PpsI GAGTC 2 cut(s) 193, 926
Ppu21I YACGTR 1 cut(s) 896
PscI ACATGT 1 cut(s) 1225
Psp6I CCWGG 3 cut(s) 244, 373, 559
PspCI CACGTG 1 cut(s) 896
PspGI CCWGG 3 cut(s) 244, 373, 559
PspN4I GGNNCC 2 cut(s) 259, 681
PspPI GGNCC 3 cut(s) 557, 899, 1086
PstNI CAGNNNCTG 1 cut(s) 62
PsuI RGATCY 2 cut(s) 257, 905
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 7 cut(s) 671, 780, 818, 1035, 1071, 1281, 1314
SatI GCNGC 3 cut(s) 446, 913, 1296
Sau3AI GATC 5 cut(s) 123, 178, 257, 905, 1325
Sau96I GGNCC 3 cut(s) 557, 899, 1086
SchI GAGTC 2 cut(s) 194, 926
ScrFI CCNGG 4 cut(s) 246, 354, 375, 561
SexAI ACCWGGT 1 cut(s) 559
SfaNI GCATC 1 cut(s) 139
SfcI CTRYAG 2 cut(s) 36, 519
SinI GGWCC 2 cut(s) 557, 899
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 5 cut(s) 232, 301, 629, 1197, 1338
SsiI CCGC 1 cut(s) 311
SspI AATATT 2 cut(s) 1286, 1318
SspMI CTAG 3 cut(s) 222, 579, 624
StyD4I CCNGG 4 cut(s) 244, 352, 373, 559
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 4 cut(s) 46, 967, 1046, 1167
TaiI ACGT 1 cut(s) 898
TaqI TCGA 3 cut(s) 122, 143, 1148
TasI AATT 5 cut(s) 232, 301, 629, 1197, 1338
TfiI GAWTC 5 cut(s) 59, 834, 875, 1220, 1253
Tru1I TTAA 7 cut(s) 671, 780, 818, 1035, 1071, 1281, 1314
Tru9I TTAA 7 cut(s) 671, 780, 818, 1035, 1071, 1281, 1314
TscAI CASTG 2 cut(s) 49, 1051
TseI GCWGC 3 cut(s) 445, 912, 1295
TspDTI ATGAA 4 cut(s) 179, 477, 879, 1026
TspRI CASTG 2 cut(s) 49, 1051
VpaK11BI GGWCC 2 cut(s) 557, 899
XagI CCTNNNNNAGG 1 cut(s) 687
XapI RAATTY 2 cut(s) 629, 1338
XceI RCATGY 1 cut(s) 1229
XspI CTAG 3 cut(s) 222, 579, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.