Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008346

Physical Location & Seq

Genomic Coordinates Reverse (-)

3300697 .. 3301489

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G10100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGACCAACCCGGTTCTGGCTCCGGTCATGCAGCAGACATGCCTGCAAGTCTTCTTCCGATTGGTGGATGTGGAGGTGCTCAAACTTGGTTCTGACAAGAAAGGGGAAAGTGTTGGTAGATTGATCAGAGCTGGAGGAGAATCTCATGAGGATCATCATCAGGTTATGCTCGATGAAATCATCAACTATGTTCAGTCATTGCAACAACAAGTTGAGGTTACCGGGTCTCTCGAACTTTGTGCCTCTGTTTGTATATTCAAGAGGTGGGAGACGAATGAGCTGTGGCGTGAAGGGATTAATGATGTAGAAATTGATTTCCTCGTCAAAGACCAAGACCCAACTTCCACAAGTGACGAGGATTTGGAAGCAAAGTACCACGACGAACAAACGGTCTTAGCTCGAGCAAAATCTGTAAAGCTAAACTGCTTGAAAACCAATGATAAGATGTCTGTGACAAGCTCCGACCAATTCGAAGAACATCATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

162

Amino Acids

18.45

Weight (kDa)

4.77

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10100 AT1G10120 AT1G10120
fragaria_vesca	FvH4_2g32580
malus_domestica	MD08G1077000.v1.1 MD15G1064500.v1.1
prunus_persica	Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1
pyrus_communis	pycom08g06400 pycom15g06130
rosa_chinensis	RchiOBHm_Chr6g0310101
rosa_laevigata	RLG00000010511
rosa_multiflora	Rmu_sc0000294.1_g000024
rosa_roxburghii	Rroxscaffold_7G00158870
rosa_rugosa	Rorug06G0377300 Rorug06G0377400
rosa_samantha	Rh6AG491400 Rh6BG500700 Rh6CG505800 Rh6DG491700
rosa_wichuraiana	Rw6G042750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	2 cut(s)	16, 64
AgsI	TTSAA	2 cut(s)	259, 430
AluBI	AGCT	5 cut(s)	131, 280, 398, 418, 459
AluI	AGCT	5 cut(s)	131, 280, 398, 418, 459
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	231, 263
AlwI	GGATC	1 cut(s)	159
Ama87I	CYCGRG	1 cut(s)	399
ApeKI	GCWGC	1 cut(s)	31
ArsI	GACNNNNNNTTYG	2 cut(s)	375, 407
AseI	ATTAAT	1 cut(s)	297
AsuC2I	CCSGG	2 cut(s)	11, 223
AsuII	TTCGAA	1 cut(s)	471
AvaI	CYCGRG	1 cut(s)	399
BbsI	GAAGAC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	43
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BclI	TGATCA	1 cut(s)	123
BcnI	CCSGG	2 cut(s)	11, 223
BcoDI	GTCTC	2 cut(s)	231, 263
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	2 cut(s)	11, 223
BmeT110I	CYCGRG	1 cut(s)	399
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	2 cut(s)	11, 223
BpiI	GAAGAC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	471
BpuMI	CCSGG	2 cut(s)	11, 223
BsaBI	GATNNNNATC	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 64
Bse3DI	GCAATG	1 cut(s)	197
Bse8I	GATNNNNATC	1 cut(s)	156
BseGI	GGATG	1 cut(s)	73
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	2 cut(s)	16, 64
BseMI	GCAATG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	399
BsiSI	CCGG	3 cut(s)	11, 23, 222
BslI	CCNNNNNNNGG	2 cut(s)	16, 64
BsmAI	GTCTC	2 cut(s)	231, 263
BsmBI	CGTCTC	1 cut(s)	263
Bso31I	GGTCTC	1 cut(s)	231
BsoBI	CYCGRG	1 cut(s)	399
Bsp119I	TTCGAA	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	123, 151
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	159
BspT104I	TTCGAA	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	231
BsrDI	GCAATG	1 cut(s)	197
BssMI	GATC	2 cut(s)	123, 151
Bst4CI	ACNGT	1 cut(s)	391
BstBI	TTCGAA	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	394
BstEII	GGTNACC	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	2 cut(s)	126, 154
BstMAI	GTCTC	2 cut(s)	231, 263
BstMBI	GATC	2 cut(s)	123, 151
BstNSI	RCATGY	1 cut(s)	42
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	2 cut(s)	9, 221
BstV1I	GCAGC	1 cut(s)	43
BstV2I	GAAGAC	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	44
CciI	TCATGA	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	3 cut(s)	28, 39, 146
CviJI	RGCY	6 cut(s)	20, 131, 280, 398, 418, 459
CviKI_1	RGCY	6 cut(s)	20, 131, 280, 398, 418, 459
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	1 cut(s)	394
DpnI	GATC	2 cut(s)	125, 153
DpnII	GATC	2 cut(s)	123, 151
Eco31I	GGTCTC	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	399
Eco91I	GGTNACC	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	263
FaeI	CATG	3 cut(s)	31, 42, 149
FaiI	YATR	6 cut(s)	29, 40, 147, 167, 189, 254
FatI	CATG	3 cut(s)	27, 38, 145
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	153
HapII	CCGG	3 cut(s)	11, 23, 222
Hin1II	CATG	3 cut(s)	31, 42, 149
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	3 cut(s)	11, 23, 222
Hpy188I	TCNGA	4 cut(s)	59, 94, 128, 463
Hpy188III	TCNNGA	3 cut(s)	146, 230, 259
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	3 cut(s)	31, 46, 202
HpyF3I	CTNAG	1 cut(s)	394
Hsp92II	CATG	3 cut(s)	31, 42, 149
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	123, 151
LmnI	GCTCC	2 cut(s)	25, 464
LpnPI	CCDG	7 cut(s)	2, 24, 36, 56, 117, 146, 235
Lsp1109I	GCAGC	1 cut(s)	43
MaeIII	GTNAC	3 cut(s)	217, 350, 451
MalI	GATC	2 cut(s)	125, 153
MboI	GATC	2 cut(s)	123, 151
MboII	GAAGA	3 cut(s)	43, 46, 485
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	2 cut(s)	309, 467
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	8 cut(s)	67, 128, 142, 208, 253, 255, 329, 349
MseI	TTAA	1 cut(s)	297
MspI	CCGG	3 cut(s)	11, 23, 222
MspR9I	CCNGG	2 cut(s)	11, 223
NciI	CCSGG	2 cut(s)	11, 223
NdeII	GATC	2 cut(s)	123, 151
NlaIII	CATG	3 cut(s)	31, 42, 149
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	2 cut(s)	350, 451
NspI	RCATGY	1 cut(s)	42
NspV	TTCGAA	1 cut(s)	471
PaeR7I	CTCGAG	1 cut(s)	399
PagI	TCATGA	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	33
PshBI	ATTAAT	1 cut(s)	297
PspEI	GGTNACC	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	21
PspXI	VCTCGAGB	1 cut(s)	399
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	2 cut(s)	123, 151
ScrFI	CCNGG	2 cut(s)	11, 223
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	9 cut(s)	78, 133, 165, 219, 266, 282, 400, 420, 461
Sfr274I	CTCGAG	1 cut(s)	399
SfuI	TTCGAA	1 cut(s)	471
SlaI	CTCGAG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
Sse9I	AATT	2 cut(s)	309, 467
StyD4I	CCNGG	2 cut(s)	9, 221
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	4 cut(s)	171, 231, 400, 471
TasI	AATT	2 cut(s)	309, 467
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseFI	GTSAC	2 cut(s)	350, 451
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	2 cut(s)	350, 451
TspDTI	ATGAA	1 cut(s)	189
VspI	ATTAAT	1 cut(s)	297
XceI	RCATGY	1 cut(s)	42
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XhoI	CTCGAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.