Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008346

Physical Location & Seq

Genomic Coordinates Forward (+)

66789598 .. 66792774

Gene Structure 3177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG491400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCATCTGTTAACTTGGGCAGGGATGGAGGCATTGATAGGACTTCAACAATGGGCACACAATCGCTTGATGATCGCCAAGTATCCGAAGAGGGTGCTTTAGGATCTTCACCTAATGGCAGGAGAAGGAAGCGAGTTCCTGAATCCAGTCCAAATAAGAATGCTGAAGGGGAGCTTAACAAGGATATGTCTGGGGAAAGCTCTGATTACCTGAAAGAACAAGATGAGAAAAAAACCAAACTGGAAGAAAACACAGCTGCAAATTTGCGTGGTAAGCAGGCGAGCAAACAGACTAAAGAGAATTCTCAAAGTGGAGATGCTGCAAAAGATAGTTACATTCATGTGAGAGCTAGAAGGGGCCAGGCTACAAATAGTCATAGCCTTGCAGAAAGGATAACTGGGAAGGCTGTAATGCTTGATGAGATCATCAACTATGTGCAATCTCTGCAACAGCAAGTTGAGTTTTTGTCAATGAAACTCGCAACAGTAAATCCAGAAGTGAACATTGATATAGAACGGATTCTATCGAAAGATATTATGAATCCACGGAATGGCAGTGGAGCTATTTTCGGGTTTAGTCCTGGAATGAACTCTTCTCACCCATACCCTCATGGTATTTTCCAGGGAAACTTGCAAAATATGCCAATTACAGCTCCACAATTTCCTTCCTTGCCTCAGACTGTATTGGACAATGAGCTCCAAGGTCTATTTCATATGGGTTTTGATTCGAGTTCGAATATTGATTGCTTGGGACAAAATGCAAGCCGCATGAAACCCGAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

261

Amino Acids

28.63

Weight (kDa)

6.0

Isoelectric Point (pI)

64.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10100 AT1G10120 AT1G10120
fragaria_vesca	FvH4_2g32580
malus_domestica	MD08G1077000.v1.1 MD15G1064500.v1.1
prunus_persica	Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1
pyrus_communis	pycom08g06400 pycom15g06130
rosa_chinensis	RchiOBHm_Chr6g0310101
rosa_laevigata	RLG00000010511
rosa_multiflora	Rmu_sc0000294.1_g000024
rosa_roxburghii	Rroxscaffold_7G00158870
rosa_rugosa	Rorug06G0377300 Rorug06G0377400
rosa_samantha	Rh6AG491400 Rh6BG500700 Rh6CG505800 Rh6DG491700
rosa_wichuraiana	Rw6G042750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	551
AciI	CCGC	1 cut(s)	766
AclWI	GGATC	1 cut(s)	112
AcsI	RAATTY	2 cut(s)	262, 301
AcuI	CTGAAG	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	551
AgsI	TTSAA	1 cut(s)	48
AjnI	CCWGG	3 cut(s)	360, 580, 621
AjuI	GAANNNNNNNTTGG	2 cut(s)	693, 725
AluBI	AGCT	7 cut(s)	175, 201, 257, 350, 563, 653, 697
AluI	AGCT	7 cut(s)	175, 201, 257, 350, 563, 653, 697
Alw21I	GWGCWC	1 cut(s)	699
AlwI	GGATC	1 cut(s)	112
Ama87I	CYCGRG	1 cut(s)	776
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	2 cut(s)	257, 320
ApoI	RAATTY	2 cut(s)	262, 301
Asp700I	GAANNNNTTC	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	2 cut(s)	102, 590
AsuII	TTCGAA	1 cut(s)	734
AvaI	CYCGRG	1 cut(s)	776
BaeGI	GKGCMC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	699
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	2 cut(s)	244, 307
BccI	CCATC	1 cut(s)	20
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	3 cut(s)	362, 582, 623
BciVI	GTATCC	1 cut(s)	94
BfaI	CTAG	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	94
BisI	GCNGC	3 cut(s)	258, 321, 766
BlsI	GCNGC	3 cut(s)	259, 322, 767
Bme1390I	CCNGG	3 cut(s)	362, 582, 623
BmeT110I	CYCGRG	1 cut(s)	776
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	3 cut(s)	362, 582, 623
BmrI	ACTGGG	1 cut(s)	408
BmsI	GCATC	1 cut(s)	307
BmuI	ACTGGG	1 cut(s)	408
Bpu14I	TTCGAA	1 cut(s)	734
BsaJI	CCNNGG	3 cut(s)	545, 622, 700
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse1I	ACTGG	3 cut(s)	147, 246, 403
BseBI	CCWGG	3 cut(s)	362, 582, 623
BseDI	CCNNGG	3 cut(s)	545, 622, 700
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseMII	CTCAG	1 cut(s)	689
BseNI	ACTGG	3 cut(s)	147, 246, 403
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	2 cut(s)	244, 307
BshFI	GGCC	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	699
BsiHKCI	CYCGRG	1 cut(s)	776
BslFI	GGGAC	1 cut(s)	765
BslI	CCNNNNNNNGG	1 cut(s)	551
BsmFI	GGGAC	1 cut(s)	765
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	360
BsoBI	CYCGRG	1 cut(s)	776
Bsp119I	TTCGAA	1 cut(s)	734
Bsp1286I	GDGCHC	2 cut(s)	59, 699
Bsp143I	GATC	3 cut(s)	73, 104, 423
BspACI	CCGC	1 cut(s)	766
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	1 cut(s)	688
BspLI	GGNNCC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	112
BspT104I	TTCGAA	1 cut(s)	734
BsrI	ACTGG	3 cut(s)	147, 246, 403
BssECI	CCNNGG	3 cut(s)	545, 622, 700
BssMI	GATC	3 cut(s)	73, 104, 423
BssT1I	CCWWGG	1 cut(s)	700
Bst2UI	CCWGG	3 cut(s)	362, 582, 623
Bst4CI	ACNGT	2 cut(s)	487, 682
Bst6I	CTCTTC	2 cut(s)	84, 598
BstAPI	GCANNNNNTGC	2 cut(s)	445, 640
BstBI	TTCGAA	1 cut(s)	734
BstC8I	GCNNGC	3 cut(s)	279, 283, 763
BstDEI	CTNAG	1 cut(s)	675
BstDSI	CCRYGG	1 cut(s)	545
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	3 cut(s)	76, 107, 426
BstMBI	GATC	3 cut(s)	73, 104, 423
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 445, 640
BstNI	CCWGG	3 cut(s)	362, 582, 623
BstSCI	CCNGG	3 cut(s)	360, 580, 621
BstSLI	GKGCMC	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	244, 307
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	545
BtsCI	GGATG	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	562
BtsIMutI	CAGTG	1 cut(s)	562
Cac8I	GCNNGC	3 cut(s)	279, 283, 763
Cfr13I	GGNCC	1 cut(s)	358
CviAII	CATG	3 cut(s)	341, 611, 769
DdeI	CTNAG	1 cut(s)	675
DpnI	GATC	3 cut(s)	75, 106, 425
DpnII	GATC	3 cut(s)	73, 104, 423
Eam1104I	CTCTTC	2 cut(s)	84, 598
EarI	CTCTTC	2 cut(s)	84, 598
Ecl136II	GAGCTC	1 cut(s)	697
Eco130I	CCWWGG	1 cut(s)	700
Eco24I	GRGCYC	1 cut(s)	699
Eco53kI	GAGCTC	1 cut(s)	697
Eco57I	CTGAAG	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	776
EcoICRI	GAGCTC	1 cut(s)	697
EcoRI	GAATTC	1 cut(s)	301
EcoRII	CCWGG	3 cut(s)	360, 580, 621
EcoT14I	CCWWGG	1 cut(s)	700
EcoT38I	GRGCYC	1 cut(s)	699
ErhI	CCWWGG	1 cut(s)	700
FaeI	CATG	3 cut(s)	344, 614, 772
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	1 cut(s)	765
FatI	CATG	3 cut(s)	340, 610, 768
FauNDI	CATATG	1 cut(s)	714
Fnu4HI	GCNGC	3 cut(s)	258, 321, 766
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	699
Fsp4HI	GCNGC	3 cut(s)	258, 321, 766
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	3 cut(s)	258, 321, 766
HaeIII	GGCC	1 cut(s)	360
Hin1II	CATG	3 cut(s)	344, 614, 772
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	4 cut(s)	143, 520, 541, 725
HpaI	GTTAAC	1 cut(s)	13
HphI	GGTGA	2 cut(s)	102, 590
Hpy166II	GTNNAC	2 cut(s)	13, 502
Hpy188I	TCNGA	3 cut(s)	88, 205, 678
Hpy188III	TCNNGA	2 cut(s)	140, 494
Hpy8I	GTNNAC	2 cut(s)	13, 502
HpyAV	CCTTC	5 cut(s)	120, 161, 348, 397, 675
HpyCH4III	ACNGT	2 cut(s)	487, 682
HpyCH4V	TGCA	7 cut(s)	260, 323, 386, 439, 448, 634, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 445, 640
HpyF3I	CTNAG	1 cut(s)	675
Hsp92II	CATG	3 cut(s)	344, 614, 772
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	3 cut(s)	73, 104, 423
LmnI	GCTCC	4 cut(s)	172, 560, 658, 702
Lsp1109I	GCAGC	2 cut(s)	244, 307
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	3 cut(s)	75, 106, 425
MboI	GATC	3 cut(s)	73, 104, 423
MboII	GAAGA	4 cut(s)	99, 101, 257, 585
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	2 cut(s)	59, 699
MluCI	AATT	4 cut(s)	262, 301, 645, 659
MnlI	CCTC	4 cut(s)	23, 85, 618, 684
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	2 cut(s)	12, 177
MslI	CAYNNNNRTG	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	257
MspR9I	CCNGG	3 cut(s)	362, 582, 623
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	3 cut(s)	362, 582, 623
MwoI	GCNNNNNNNGC	3 cut(s)	274, 445, 640
NdeI	CATATG	1 cut(s)	714
NdeII	GATC	3 cut(s)	73, 104, 423
NlaIII	CATG	3 cut(s)	344, 614, 772
NlaIV	GGNNCC	1 cut(s)	359
NspV	TTCGAA	1 cut(s)	734
PctI	GAATGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	4 cut(s)	143, 520, 541, 725
PflMI	CCANNNNNTGG	1 cut(s)	551
PfoI	TCCNGGA	1 cut(s)	580
PkrI	GCNGC	3 cut(s)	259, 322, 767
Psp124BI	GAGCTC	1 cut(s)	699
Psp6I	CCWGG	3 cut(s)	360, 580, 621
PspGI	CCWGG	3 cut(s)	360, 580, 621
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	341
SacI	GAGCTC	1 cut(s)	699
SaqAI	TTAA	2 cut(s)	12, 177
SatI	GCNGC	3 cut(s)	258, 321, 766
Sau3AI	GATC	3 cut(s)	73, 104, 423
Sau96I	GGNCC	1 cut(s)	358
ScrFI	CCNGG	3 cut(s)	362, 582, 623
SduI	GDGCHC	2 cut(s)	59, 699
SfaNI	GCATC	1 cut(s)	307
SfuI	TTCGAA	1 cut(s)	734
SmiMI	CAYNNNNRTG	1 cut(s)	341
Sse9I	AATT	4 cut(s)	262, 301, 645, 659
SsiI	CCGC	1 cut(s)	766
SspI	AATATT	1 cut(s)	739
SspMI	CTAG	1 cut(s)	351
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	3 cut(s)	360, 580, 621
StyI	CCWWGG	1 cut(s)	700
TaaI	ACNGT	2 cut(s)	487, 682
TaqI	TCGA	3 cut(s)	527, 728, 734
TasI	AATT	4 cut(s)	262, 301, 645, 659
TauI	GCSGC	1 cut(s)	768
TfiI	GAWTC	4 cut(s)	143, 520, 541, 725
Tru1I	TTAA	2 cut(s)	12, 177
Tru9I	TTAA	2 cut(s)	12, 177
TscAI	CASTG	1 cut(s)	562
TseI	GCWGC	2 cut(s)	257, 320
TspDTI	ATGAA	6 cut(s)	329, 488, 554, 602, 701, 785
TspGWI	ACGGA	2 cut(s)	532, 562
TspRI	CASTG	1 cut(s)	562
Van91I	CCANNNNNTGG	1 cut(s)	551
XapI	RAATTY	2 cut(s)	262, 301
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.