Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008346

Physical Location & Seq

Genomic Coordinates Reverse (-)

6335993 .. 6339815

Gene Structure 3823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1077000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGGAGGTCATGACAGTGAGGATGTAGGGTTTCAGCATAGAAATGATGGGAGCCTGAACCGTCCATCTTCCGGGATGAGCACGAATCCGCTGCCCGAAAAGGTTTCCAGAATGGCAATGAGTTCTGTGTCCATGTTTAAGCCTTCAAATGGGGCTGACCCTTTCTTTGGTTCTGGTTGGGATCCAATTGTTTCATTGAGTCAGAATGATAATTTTGGCGGTCCTTCGGGTGTTTCCCATGGTGAATTTCCCAATCCGCCTTACCCCGTTGCGATGGAGAATCAGGGAGTGAGTAGCACCTCCCACCTTGTTCAATACCCATCTGATTCAAGCTATGTTGGGATGGTGCCAAAGCTTCCTCAATGTTTTGGAAGTGGAAGCTTCTCAGAAATGGTTGGTTCTTTTGGTCTCTCTGAGTGTGGCCAGATTGCTAACCCTGGGTGTCCTCCGAACTATAACCCCAACAGGGAGGGGGGCACTGAGAAGACTTCAACAATCGGTGCCCAATCTCACGATGATCGCCAAATTTCTGAAGAGGGTGCTTTAGCATCTTCGCCGAATGGAAAGAGAAGGAAACGAGTTTCCGAATCCAACTCTGCATTCAGTCCAAATAAGAATGCTGATGGGGAACTTAACAAGGATATGTCTGGGGAGAGCTCTGATTATCTGAAAGAGCAAGATGAGAAGAAAGCAAAAACTGAAGAAAACGCAGCTGCAAATTTGCGTGGCAAGCAGATGGGCAAACAGACTAAAGAAAACTCTCAAAGCGGAGATCCAAAAGACAGTTACATTCATGTTAGAGCCCGAAGGGGCCAGGCTACAAATAGTCATAGCCTCGCTGAAAGGGTAAGAAGAGAAAAGATTAGCGAGCGGATGAGATTGCTTCAAGAACTTGTTCCGGGATGCAATAAGATTACTGGGAAGGCTGTAATGCTTGATGAGATTATCAATTATGTGCAGTCTCTGCAACAGCAAGTTGAGTTTTTATCAATGAAACTTGCGACGGTCAATCCAGAACTCAACATTGATATTGAACGGATTCTAACCAAAGATATTCTTAACTCGCGGAGTGGCGGTGGAGCTATCTTCGGGTTTAGTCCTGGAATCGGCTCTTCTCACCCATACCCTCCCGGTATGTTCCCTGGAAACTTGCCAAGTATGCCAACTTCAGCTCCACAATTTCCTTCCTTGCCTCAGAATGTATTAGACAATGAGCTCCAAGGTCTTTTCCATATGGGTTTTGATTCTAGTTCAGCTAATGACAATATGGGACAAAATGGCCGCTTGAAACCGGAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

434

Amino Acids

46.72

Weight (kDa)

5.79

Isoelectric Point (pI)

59.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	275 - 323	1.3e-06	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	281 - 326	6.7e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10100 AT1G10120 AT1G10120
fragaria_vesca	FvH4_2g32580
malus_domestica	MD08G1077000.v1.1 MD15G1064500.v1.1
prunus_persica	Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1
pyrus_communis	pycom08g06400 pycom15g06130
rosa_chinensis	RchiOBHm_Chr6g0310101
rosa_laevigata	RLG00000010511
rosa_multiflora	Rmu_sc0000294.1_g000024
rosa_roxburghii	Rroxscaffold_7G00158870
rosa_rugosa	Rorug06G0377300 Rorug06G0377400
rosa_samantha	Rh6AG491400 Rh6BG500700 Rh6CG505800 Rh6DG491700
rosa_wichuraiana	Rw6G042750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1300
AccB1I	GGYRCC	2 cut(s)	346, 500
AccBSI	CCGCTC	1 cut(s)	871
AccII	CGCG	1 cut(s)	1066
AciI	CCGC	8 cut(s)	89, 219, 257, 768, 871, 1066, 1074, 1282
AclWI	GGATC	3 cut(s)	176, 189, 767
AcoI	YGGCCR	2 cut(s)	421, 1279
AcsI	RAATTY	3 cut(s)	245, 525, 718
AcuI	CTGAAG	3 cut(s)	552, 720, 1152
AfiI	CCNNNNNNNGG	5 cut(s)	71, 149, 167, 466, 1106
AgsI	TTSAA	7 cut(s)	147, 314, 330, 492, 887, 1034, 1288
AjnI	CCWGG	4 cut(s)	436, 813, 1099, 1141
AjuI	GAANNNNNNNTTGG	2 cut(s)	584, 616
AluBI	AGCT	9 cut(s)	333, 355, 381, 657, 713, 1082, 1172, 1216, 1256
AluI	AGCT	9 cut(s)	333, 355, 381, 657, 713, 1082, 1172, 1216, 1256
Alw21I	GWGCWC	3 cut(s)	83, 659, 1218
Alw26I	GTCTC	2 cut(s)	413, 966
AlwI	GGATC	3 cut(s)	176, 189, 767
AlwNI	CAGNNNCTG	1 cut(s)	964
AoxI	GGCC	3 cut(s)	421, 811, 1279
ApeKI	GCWGC	3 cut(s)	91, 710, 713
ApoI	RAATTY	3 cut(s)	245, 525, 718
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Asp700I	GAANNNNTTC	2 cut(s)	894, 1038
AspS9I	GGNCC	2 cut(s)	221, 811
AsuC2I	CCSGG	3 cut(s)	73, 900, 1131
AsuHPI	GGTGA	2 cut(s)	254, 1109
AvaII	GGWCC	1 cut(s)	221
BaeGI	GKGCMC	2 cut(s)	479, 505
BalI	TGGCCA	1 cut(s)	423
BamHI	GGATCC	1 cut(s)	181
BanI	GGYRCC	2 cut(s)	346, 500
BanII	GRGCYC	3 cut(s)	659, 805, 1218
BarI	GAAGNNNNNNTAC	2 cut(s)	1150, 1182
BbsI	GAAGAC	1 cut(s)	491
Bbv12I	GWGCWC	3 cut(s)	83, 659, 1218
BbvI	GCAGC	3 cut(s)	78, 700, 722
BccI	CCATC	7 cut(s)	41, 73, 268, 328, 337, 617, 730
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BciT130I	CCWGG	4 cut(s)	438, 815, 1101, 1143
BcnI	CCSGG	3 cut(s)	73, 900, 1131
BcoDI	GTCTC	2 cut(s)	413, 966
BfaI	CTAG	1 cut(s)	1248
BisI	GCNGC	4 cut(s)	92, 711, 714, 1282
BlsI	GCNGC	4 cut(s)	93, 712, 715, 1283
Bme1390I	CCNGG	7 cut(s)	73, 438, 815, 900, 1101, 1131, 1143
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	221, 811
BmiI	GGNNCC	5 cut(s)	53, 183, 348, 502, 812
BmrFI	CCNGG	7 cut(s)	73, 438, 815, 900, 1101, 1131, 1143
BmrI	ACTGGG	1 cut(s)	927
BmsI	GCATC	2 cut(s)	557, 893
BmuI	ACTGGG	1 cut(s)	927
BpiI	GAAGAC	1 cut(s)	491
BpuMI	CCSGG	3 cut(s)	73, 900, 1131
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	5 cut(s)	238, 436, 437, 1141, 1219
BsaWI	WCCGGW	1 cut(s)	1291
BsaXI	ACNNNNNCTCC	4 cut(s)	1060, 1090, 1156, 1186
Bsc4I	CCNNNNNNNGG	5 cut(s)	71, 149, 167, 466, 1106
Bse1I	ACTGG	1 cut(s)	922
Bse3DI	GCAATG	1 cut(s)	123
BseBI	CCWGG	4 cut(s)	438, 815, 1101, 1143
BseDI	CCNNGG	5 cut(s)	238, 436, 437, 1141, 1219
BseGI	GGATG	5 cut(s)	28, 81, 348, 879, 908
BseLI	CCNNNNNNNGG	5 cut(s)	71, 149, 167, 466, 1106
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	4 cut(s)	399, 405, 471, 1208
BseNI	ACTGG	1 cut(s)	922
BseSI	GKGCMC	2 cut(s)	479, 505
BseXI	GCAGC	3 cut(s)	78, 700, 722
BsgI	GTGCAG	1 cut(s)	977
Bsh1236I	CGCG	1 cut(s)	1066
BshFI	GGCC	3 cut(s)	423, 813, 1281
BshNI	GGYRCC	2 cut(s)	346, 500
BsiHKAI	GWGCWC	3 cut(s)	83, 659, 1218
BsiSI	CCGG	4 cut(s)	72, 899, 1131, 1292
BslFI	GGGAC	1 cut(s)	1284
BslI	CCNNNNNNNGG	5 cut(s)	71, 149, 167, 466, 1106
BsmAI	GTCTC	2 cut(s)	413, 966
BsmFI	GGGAC	1 cut(s)	1284
BsmI	GAATGC	2 cut(s)	599, 622
BsnI	GGCC	3 cut(s)	423, 813, 1281
Bso31I	GGTCTC	1 cut(s)	413
Bsp1286I	GDGCHC	6 cut(s)	83, 479, 505, 659, 805, 1218
Bsp143I	GATC	3 cut(s)	181, 517, 772
Bsp19I	CCATGG	1 cut(s)	238
BspACI	CCGC	8 cut(s)	89, 219, 257, 768, 871, 1066, 1074, 1282
BspANI	GGCC	3 cut(s)	423, 813, 1281
BspCNI	CTCAG	4 cut(s)	398, 406, 472, 1207
BspFNI	CGCG	1 cut(s)	1066
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	5 cut(s)	53, 183, 348, 502, 812
BspPI	GGATC	3 cut(s)	176, 189, 767
BspQI	GCTCTTC	1 cut(s)	1117
BspT107I	GGYRCC	2 cut(s)	346, 500
BspTNI	GGTCTC	1 cut(s)	413
BsrBI	CCGCTC	1 cut(s)	871
BsrDI	GCAATG	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	922
BssECI	CCNNGG	5 cut(s)	238, 436, 437, 1141, 1219
BssMI	GATC	3 cut(s)	181, 517, 772
BssT1I	CCWWGG	2 cut(s)	238, 1219
Bst2UI	CCWGG	4 cut(s)	438, 815, 1101, 1143
Bst4CI	ACNGT	4 cut(s)	17, 62, 785, 1006
Bst6I	CTCTTC	3 cut(s)	528, 847, 1117
BstAPI	GCANNNNNTGC	1 cut(s)	964
BstC8I	GCNNGC	2 cut(s)	731, 869
BstDEI	CTNAG	4 cut(s)	385, 414, 480, 1194
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	5 cut(s)	28, 81, 348, 879, 908
BstFNI	CGCG	1 cut(s)	1066
BstKTI	GATC	3 cut(s)	184, 520, 775
BstMAI	GTCTC	2 cut(s)	413, 966
BstMBI	GATC	3 cut(s)	181, 517, 772
BstMWI	GCNNNNNNNGC	3 cut(s)	730, 964, 1159
BstNI	CCWGG	4 cut(s)	438, 815, 1101, 1143
BstSCI	CCNGG	7 cut(s)	71, 436, 813, 898, 1099, 1129, 1141
BstSLI	GKGCMC	2 cut(s)	479, 505
BstUI	CGCG	1 cut(s)	1066
BstV1I	GCAGC	3 cut(s)	78, 700, 722
BstV2I	GAAGAC	1 cut(s)	491
BstX2I	RGATCY	2 cut(s)	181, 772
BstYI	RGATCY	2 cut(s)	181, 772
BsuRI	GGCC	3 cut(s)	423, 813, 1281
BtgI	CCRYGG	1 cut(s)	238
BtgZI	GCGATG	1 cut(s)	287
BtsCI	GGATG	5 cut(s)	28, 81, 348, 879, 908
BtsIMutI	CAGTG	2 cut(s)	22, 477
Cac8I	GCNNGC	2 cut(s)	731, 869
CaiI	CAGNNNCTG	1 cut(s)	964
CciI	TCATGA	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	221, 811
CviAII	CATG	4 cut(s)	11, 133, 239, 794
DdeI	CTNAG	4 cut(s)	385, 414, 480, 1194
DpnI	GATC	3 cut(s)	183, 519, 774
DpnII	GATC	3 cut(s)	181, 517, 772
EaeI	YGGCCR	2 cut(s)	421, 1279
Eam1104I	CTCTTC	3 cut(s)	528, 847, 1117
EarI	CTCTTC	3 cut(s)	528, 847, 1117
EciI	GGCGGA	1 cut(s)	246
Ecl136II	GAGCTC	2 cut(s)	657, 1216
Eco130I	CCWWGG	2 cut(s)	238, 1219
Eco24I	GRGCYC	3 cut(s)	659, 805, 1218
Eco31I	GGTCTC	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	2 cut(s)	657, 1216
Eco57I	CTGAAG	3 cut(s)	552, 720, 1152
EcoICRI	GAGCTC	2 cut(s)	657, 1216
EcoRII	CCWGG	4 cut(s)	436, 813, 1099, 1141
EcoT14I	CCWWGG	2 cut(s)	238, 1219
EcoT38I	GRGCYC	3 cut(s)	659, 805, 1218
ErhI	CCWWGG	2 cut(s)	238, 1219
FaeI	CATG	4 cut(s)	14, 136, 242, 797
FalI	AAGNNNNNCTT	2 cut(s)	1041, 1073
FaqI	GGGAC	1 cut(s)	1284
FatI	CATG	4 cut(s)	10, 132, 238, 793
FauNDI	CATATG	1 cut(s)	1233
Fnu4HI	GCNGC	4 cut(s)	92, 711, 714, 1282
FokI	GGATG	5 cut(s)	35, 88, 355, 886, 915
FriOI	GRGCYC	3 cut(s)	659, 805, 1218
Fsp4HI	GCNGC	4 cut(s)	92, 711, 714, 1282
FspBI	CTAG	1 cut(s)	1248
GluI	GCNGC	4 cut(s)	92, 711, 714, 1282
HaeIII	GGCC	3 cut(s)	423, 813, 1281
HapII	CCGG	4 cut(s)	72, 899, 1131, 1292
Hin1II	CATG	4 cut(s)	14, 136, 242, 797
HindIII	AAGCTT	2 cut(s)	353, 379
HinfI	GANTC	8 cut(s)	85, 199, 280, 326, 587, 1039, 1104, 1244
HpaII	CCGG	4 cut(s)	72, 899, 1131, 1292
HphI	GGTGA	2 cut(s)	254, 1109
Hpy188III	TCNNGA	5 cut(s)	11, 108, 512, 887, 1013
Hpy99I	CGWCG	1 cut(s)	1006
HpyAV	CCTTC	6 cut(s)	153, 234, 564, 801, 916, 1194
HpyCH4III	ACNGT	4 cut(s)	17, 62, 785, 1006
HpyCH4V	TGCA	5 cut(s)	599, 716, 906, 958, 967
HpyF10VI	GCNNNNNNNGC	3 cut(s)	730, 964, 1159
HpyF3I	CTNAG	4 cut(s)	385, 414, 480, 1194
Hsp92II	CATG	4 cut(s)	14, 136, 242, 797
Kzo9I	GATC	3 cut(s)	181, 517, 772
LguI	GCTCTTC	1 cut(s)	1117
LmnI	GCTCC	4 cut(s)	51, 1079, 1177, 1221
Lsp1109I	GCAGC	3 cut(s)	78, 700, 722
LweI	GCATC	2 cut(s)	557, 893
MaeI	CTAG	1 cut(s)	1248
MaeIII	GTNAC	1 cut(s)	785
MalI	GATC	3 cut(s)	183, 519, 774
MbiI	CCGCTC	1 cut(s)	871
MboI	GATC	3 cut(s)	181, 517, 772
MboII	GAAGA	9 cut(s)	60, 496, 543, 545, 697, 713, 864, 1078, 1104
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	2 cut(s)	181, 772
MhlI	GDGCHC	6 cut(s)	83, 479, 505, 659, 805, 1218
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	7 cut(s)	186, 211, 245, 525, 718, 949, 1178
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	1 cut(s)	615
MnlI	CCTC	9 cut(s)	13, 310, 369, 456, 463, 529, 845, 1137, 1203
Mox20I	TGGCCA	1 cut(s)	423
MroXI	GAANNNNTTC	2 cut(s)	894, 1038
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	3 cut(s)	138, 633, 1059
MslI	CAYNNNNRTG	2 cut(s)	15, 42
Msp20I	TGGCCA	1 cut(s)	423
MspA1I	CMGCKG	2 cut(s)	91, 713
MspI	CCGG	4 cut(s)	72, 899, 1131, 1292
MspR9I	CCNGG	7 cut(s)	73, 438, 815, 900, 1101, 1131, 1143
MunI	CAATTG	1 cut(s)	186
Mva1269I	GAATGC	2 cut(s)	599, 622
MvaI	CCWGG	4 cut(s)	438, 815, 1101, 1143
MvnI	CGCG	1 cut(s)	1066
MwoI	GCNNNNNNNGC	3 cut(s)	730, 964, 1159
NciI	CCSGG	3 cut(s)	73, 900, 1131
NcoI	CCATGG	1 cut(s)	238
NdeI	CATATG	1 cut(s)	1233
NdeII	GATC	3 cut(s)	181, 517, 772
NlaIII	CATG	4 cut(s)	14, 136, 242, 797
NlaIV	GGNNCC	5 cut(s)	53, 183, 348, 502, 812
PagI	TCATGA	1 cut(s)	10
PasI	CCCWGGG	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	1117
PctI	GAATGC	2 cut(s)	599, 622
PdmI	GAANNNNTTC	2 cut(s)	894, 1038
PfeI	GAWTC	7 cut(s)	85, 280, 326, 587, 1039, 1104, 1244
PfoI	TCCNGGA	3 cut(s)	71, 898, 1099
PkrI	GCNGC	4 cut(s)	93, 712, 715, 1283
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
PsiI	TTATAA	1 cut(s)	1300
Psp124BI	GAGCTC	2 cut(s)	659, 1218
Psp6I	CCWGG	4 cut(s)	436, 813, 1099, 1141
PspGI	CCWGG	4 cut(s)	436, 813, 1099, 1141
PspN4I	GGNNCC	5 cut(s)	53, 183, 348, 502, 812
PspPI	GGNCC	2 cut(s)	221, 811
PstNI	CAGNNNCTG	1 cut(s)	964
PsuI	RGATCY	2 cut(s)	181, 772
PvuII	CAGCTG	1 cut(s)	713
RseI	CAYNNNNRTG	2 cut(s)	15, 42
SacI	GAGCTC	2 cut(s)	659, 1218
SapI	GCTCTTC	1 cut(s)	1117
SaqAI	TTAA	3 cut(s)	138, 633, 1059
SatI	GCNGC	4 cut(s)	92, 711, 714, 1282
Sau3AI	GATC	3 cut(s)	181, 517, 772
Sau96I	GGNCC	2 cut(s)	221, 811
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	7 cut(s)	73, 438, 815, 900, 1101, 1131, 1143
SduI	GDGCHC	6 cut(s)	83, 479, 505, 659, 805, 1218
SfaNI	GCATC	2 cut(s)	557, 893
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	15, 42
Sse9I	AATT	7 cut(s)	186, 211, 245, 525, 718, 949, 1178
SsiI	CCGC	8 cut(s)	89, 219, 257, 768, 871, 1066, 1074, 1282
SspMI	CTAG	1 cut(s)	1248
SstI	GAGCTC	2 cut(s)	659, 1218
StyD4I	CCNGG	7 cut(s)	71, 436, 813, 898, 1099, 1129, 1141
StyI	CCWWGG	2 cut(s)	238, 1219
TaaI	ACNGT	4 cut(s)	17, 62, 785, 1006
TasI	AATT	7 cut(s)	186, 211, 245, 525, 718, 949, 1178
TauI	GCSGC	1 cut(s)	1284
TfiI	GAWTC	7 cut(s)	85, 280, 326, 587, 1039, 1104, 1244
Tru1I	TTAA	3 cut(s)	138, 633, 1059
Tru9I	TTAA	3 cut(s)	138, 633, 1059
TscAI	CASTG	2 cut(s)	22, 484
TseI	GCWGC	3 cut(s)	91, 710, 713
TspDTI	ATGAA	3 cut(s)	183, 782, 1007
TspGWI	ACGGA	1 cut(s)	1051
TspRI	CASTG	2 cut(s)	22, 484
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	3 cut(s)	245, 525, 718
XmnI	GAANNNNTTC	2 cut(s)	894, 1038
XspI	CTAG	1 cut(s)	1248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.