Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008346

Physical Location & Seq

Genomic Coordinates Reverse (-)

4954673 .. 4955717

Gene Structure 1045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGGAGGTCATGACAGTGAGGATGTAGGGTTTCAGCATAGAATTGATGGGAGCCTGAACTGTCCATCTTCCGGGATGAGCATGAATCCGCTGCCCGAAAAGGTTTCCAGAACGGCAATGAGTTCTGTGTCCATGTTTAAGCCTTCAAATGGGGCTGACCCTTTCTTTGGTTCTGGTTGGGATCCAATTGTTTCATTGAGTCAGAATGATAATTTTGGCGGTCCTTCGGGTGTTTCCCATGGCGAATTTCCCAATCCACCTTACCCCGTTGCGATGGAGAATCAGGGAATGAGTAGCACCTCCCACCTTGTTCAATATCCATCTGATTCAAGCTATGTTGGGATGGTGCCAAAGCTTCCTCAATGTTTTGGAAGTGGAAGCTTCTCAGAAATGGTTGGTTCTTTTGGTCTCTCTGAGTGTGGCCAGATTGCTAACCCTGGGTGTCCTCCGAACTATAACCCCAACAGGGAGGGGGGCACTGAGAGGACTTCAACAATCGGTGCCCAATCTCACGATGATCGCCAAATTTCTGAAGAGGGTGCTTTAGGATCTTCGCCGAATGGAAAGAGAAGGAAACGAGTTTCCAAATCCAACTCTGCATTCAGTCCAAATAAGAATGCTGATGGGGAACTTAACAAGGATATGTCTGGGGAGAGCTCTGATTATCTGAAAGAGCAAGATGAGAAGAAAGCAAAAACTGAAGAAAATGCAGCTGCAAATTTGCGTGGCAAGCAGATGGGCAAACAGACTAAAGAAAATTCTCAAAGCGGATCGATCCAAAAGACAGTTACATTCATATTAGAGCCCGAAGGGGCCAGGCTACAAATAGTCATAGCCTCGCAGAAAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

284

Amino Acids

30.11

Weight (kDa)

5.62

Isoelectric Point (pI)

55.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10100 AT1G10120 AT1G10120
fragaria_vesca	FvH4_2g32580
malus_domestica	MD08G1077000.v1.1 MD15G1064500.v1.1
prunus_persica	Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1
pyrus_communis	pycom08g06400 pycom15g06130
rosa_chinensis	RchiOBHm_Chr6g0310101
rosa_laevigata	RLG00000010511
rosa_multiflora	Rmu_sc0000294.1_g000024
rosa_roxburghii	Rroxscaffold_7G00158870
rosa_rugosa	Rorug06G0377300 Rorug06G0377400
rosa_samantha	Rh6AG491400 Rh6BG500700 Rh6CG505800 Rh6DG491700
rosa_wichuraiana	Rw6G042750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	346, 500
AciI	CCGC	3 cut(s)	89, 219, 768
AclWI	GGATC	5 cut(s)	176, 189, 556, 769, 778
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	4 cut(s)	245, 525, 718, 757
AcuI	CTGAAG	2 cut(s)	552, 720
AfiI	CCNNNNNNNGG	4 cut(s)	71, 149, 167, 466
AgsI	TTSAA	4 cut(s)	147, 314, 330, 492
AjnI	CCWGG	2 cut(s)	436, 815
AjuI	GAANNNNNNNTTGG	2 cut(s)	584, 616
AluBI	AGCT	5 cut(s)	333, 355, 381, 657, 713
AluI	AGCT	5 cut(s)	333, 355, 381, 657, 713
Alw21I	GWGCWC	1 cut(s)	659
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	5 cut(s)	176, 189, 556, 769, 778
AoxI	GGCC	2 cut(s)	421, 813
ApeKI	GCWGC	3 cut(s)	91, 710, 713
ApoI	RAATTY	4 cut(s)	245, 525, 718, 757
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AspS9I	GGNCC	2 cut(s)	221, 813
AsuC2I	CCSGG	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	221
BaeGI	GKGCMC	2 cut(s)	479, 505
BalI	TGGCCA	1 cut(s)	423
BamHI	GGATCC	1 cut(s)	181
BanI	GGYRCC	2 cut(s)	346, 500
BanII	GRGCYC	2 cut(s)	659, 807
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	3 cut(s)	78, 700, 722
BccI	CCATC	7 cut(s)	41, 73, 268, 328, 337, 617, 730
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	2 cut(s)	438, 817
BcnI	CCSGG	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	413
BisI	GCNGC	3 cut(s)	92, 711, 714
BlsI	GCNGC	3 cut(s)	93, 712, 715
Bme1390I	CCNGG	3 cut(s)	73, 438, 817
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	221, 813
BmiI	GGNNCC	5 cut(s)	53, 183, 348, 502, 814
BmrFI	CCNGG	3 cut(s)	73, 438, 817
BpuMI	CCSGG	1 cut(s)	73
Bsa29I	ATCGAT	1 cut(s)	773
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	3 cut(s)	238, 436, 437
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 149, 167, 466
Bse3DI	GCAATG	1 cut(s)	123
BseBI	CCWGG	2 cut(s)	438, 817
BseCI	ATCGAT	1 cut(s)	773
BseDI	CCNNGG	3 cut(s)	238, 436, 437
BseGI	GGATG	3 cut(s)	28, 81, 348
BseLI	CCNNNNNNNGG	4 cut(s)	71, 149, 167, 466
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	3 cut(s)	399, 405, 471
BseSI	GKGCMC	2 cut(s)	479, 505
BseXI	GCAGC	3 cut(s)	78, 700, 722
BshFI	GGCC	2 cut(s)	423, 815
BshNI	GGYRCC	2 cut(s)	346, 500
BshVI	ATCGAT	1 cut(s)	773
BsiHKAI	GWGCWC	1 cut(s)	659
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	4 cut(s)	71, 149, 167, 466
BsmAI	GTCTC	1 cut(s)	413
BsmI	GAATGC	2 cut(s)	599, 622
BsnI	GGCC	2 cut(s)	423, 815
Bso31I	GGTCTC	1 cut(s)	413
Bsp1286I	GDGCHC	4 cut(s)	479, 505, 659, 807
Bsp143I	GATC	5 cut(s)	181, 517, 548, 770, 774
Bsp19I	CCATGG	1 cut(s)	238
BspACI	CCGC	3 cut(s)	89, 219, 768
BspANI	GGCC	2 cut(s)	423, 815
BspCNI	CTCAG	3 cut(s)	398, 406, 472
BspDI	ATCGAT	1 cut(s)	773
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	5 cut(s)	53, 183, 348, 502, 814
BspPI	GGATC	5 cut(s)	176, 189, 556, 769, 778
BspT107I	GGYRCC	2 cut(s)	346, 500
BspTNI	GGTCTC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	123
BssECI	CCNNGG	3 cut(s)	238, 436, 437
BssMI	GATC	5 cut(s)	181, 517, 548, 770, 774
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	2 cut(s)	438, 817
Bst4CI	ACNGT	3 cut(s)	17, 62, 787
Bst6I	CTCTTC	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	731
BstDEI	CTNAG	3 cut(s)	385, 414, 480
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	3 cut(s)	28, 81, 348
BstKTI	GATC	5 cut(s)	184, 520, 551, 773, 777
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	5 cut(s)	181, 517, 548, 770, 774
BstMWI	GCNNNNNNNGC	1 cut(s)	730
BstNI	CCWGG	2 cut(s)	438, 817
BstSCI	CCNGG	3 cut(s)	71, 436, 815
BstSLI	GKGCMC	2 cut(s)	479, 505
BstV1I	GCAGC	3 cut(s)	78, 700, 722
BstX2I	RGATCY	2 cut(s)	181, 548
BstYI	RGATCY	2 cut(s)	181, 548
Bsu15I	ATCGAT	1 cut(s)	773
BsuRI	GGCC	2 cut(s)	423, 815
BsuTUI	ATCGAT	1 cut(s)	773
BtgI	CCRYGG	1 cut(s)	238
BtgZI	GCGATG	1 cut(s)	287
BtsCI	GGATG	3 cut(s)	28, 81, 348
BtsIMutI	CAGTG	2 cut(s)	22, 477
Cac8I	GCNNGC	1 cut(s)	731
CciI	TCATGA	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	221, 813
ClaI	ATCGAT	1 cut(s)	773
CviAII	CATG	4 cut(s)	11, 82, 133, 239
DdeI	CTNAG	3 cut(s)	385, 414, 480
DpnI	GATC	5 cut(s)	183, 519, 550, 772, 776
DpnII	GATC	5 cut(s)	181, 517, 548, 770, 774
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Ecl136II	GAGCTC	1 cut(s)	657
Eco130I	CCWWGG	1 cut(s)	238
Eco24I	GRGCYC	2 cut(s)	659, 807
Eco31I	GGTCTC	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	657
Eco57I	CTGAAG	2 cut(s)	552, 720
EcoICRI	GAGCTC	1 cut(s)	657
EcoRII	CCWGG	2 cut(s)	436, 815
EcoT14I	CCWWGG	1 cut(s)	238
EcoT38I	GRGCYC	2 cut(s)	659, 807
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	4 cut(s)	14, 85, 136, 242
FatI	CATG	4 cut(s)	10, 81, 132, 238
Fnu4HI	GCNGC	3 cut(s)	92, 711, 714
FokI	GGATG	3 cut(s)	35, 88, 355
FriOI	GRGCYC	2 cut(s)	659, 807
Fsp4HI	GCNGC	3 cut(s)	92, 711, 714
GluI	GCNGC	3 cut(s)	92, 711, 714
HaeIII	GGCC	2 cut(s)	423, 815
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	4 cut(s)	14, 85, 136, 242
HindIII	AAGCTT	2 cut(s)	353, 379
HinfI	GANTC	4 cut(s)	85, 199, 280, 326
HpaII	CCGG	1 cut(s)	72
Hpy188I	TCNGA	8 cut(s)	204, 325, 388, 415, 450, 532, 661, 669
Hpy188III	TCNNGA	3 cut(s)	11, 108, 512
HpyAV	CCTTC	4 cut(s)	153, 234, 564, 803
HpyCH4III	ACNGT	3 cut(s)	17, 62, 787
HpyCH4V	TGCA	3 cut(s)	599, 710, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	730
HpyF3I	CTNAG	3 cut(s)	385, 414, 480
Hsp92II	CATG	4 cut(s)	14, 85, 136, 242
Kzo9I	GATC	5 cut(s)	181, 517, 548, 770, 774
LmnI	GCTCC	1 cut(s)	51
Lsp1109I	GCAGC	3 cut(s)	78, 700, 722
MaeIII	GTNAC	1 cut(s)	787
MalI	GATC	5 cut(s)	183, 519, 550, 772, 776
MboI	GATC	5 cut(s)	181, 517, 548, 770, 774
MboII	GAAGA	5 cut(s)	60, 543, 545, 697, 713
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	2 cut(s)	181, 548
MhlI	GDGCHC	4 cut(s)	479, 505, 659, 807
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	7 cut(s)	42, 186, 211, 245, 525, 718, 757
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	1 cut(s)	615
MnlI	CCTC	8 cut(s)	13, 310, 369, 456, 463, 477, 529, 847
Mox20I	TGGCCA	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	2 cut(s)	138, 633
MslI	CAYNNNNRTG	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	423
MspA1I	CMGCKG	2 cut(s)	91, 713
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	3 cut(s)	73, 438, 817
MunI	CAATTG	1 cut(s)	186
Mva1269I	GAATGC	2 cut(s)	599, 622
MvaI	CCWGG	2 cut(s)	438, 817
MwoI	GCNNNNNNNGC	1 cut(s)	730
NciI	CCSGG	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	238
NdeII	GATC	5 cut(s)	181, 517, 548, 770, 774
NlaIII	CATG	4 cut(s)	14, 85, 136, 242
NlaIV	GGNNCC	5 cut(s)	53, 183, 348, 502, 814
PagI	TCATGA	1 cut(s)	10
PasI	CCCWGGG	1 cut(s)	437
PctI	GAATGC	2 cut(s)	599, 622
PfeI	GAWTC	3 cut(s)	85, 280, 326
PfoI	TCCNGGA	1 cut(s)	71
PkrI	GCNGC	3 cut(s)	93, 712, 715
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	659
Psp6I	CCWGG	2 cut(s)	436, 815
PspGI	CCWGG	2 cut(s)	436, 815
PspN4I	GGNNCC	5 cut(s)	53, 183, 348, 502, 814
PspPI	GGNCC	2 cut(s)	221, 813
PsuI	RGATCY	2 cut(s)	181, 548
PvuII	CAGCTG	1 cut(s)	713
RseI	CAYNNNNRTG	1 cut(s)	15
SacI	GAGCTC	1 cut(s)	659
SaqAI	TTAA	2 cut(s)	138, 633
SatI	GCNGC	3 cut(s)	92, 711, 714
Sau3AI	GATC	5 cut(s)	181, 517, 548, 770, 774
Sau96I	GGNCC	2 cut(s)	221, 813
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	3 cut(s)	73, 438, 817
SduI	GDGCHC	4 cut(s)	479, 505, 659, 807
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	15
Sse9I	AATT	7 cut(s)	42, 186, 211, 245, 525, 718, 757
SsiI	CCGC	3 cut(s)	89, 219, 768
SstI	GAGCTC	1 cut(s)	659
StyD4I	CCNGG	3 cut(s)	71, 436, 815
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	3 cut(s)	17, 62, 787
TaqI	TCGA	1 cut(s)	773
TasI	AATT	7 cut(s)	42, 186, 211, 245, 525, 718, 757
TfiI	GAWTC	3 cut(s)	85, 280, 326
Tru1I	TTAA	2 cut(s)	138, 633
Tru9I	TTAA	2 cut(s)	138, 633
TscAI	CASTG	2 cut(s)	22, 484
TseI	GCWGC	3 cut(s)	91, 710, 713
TspDTI	ATGAA	3 cut(s)	98, 183, 784
TspRI	CASTG	2 cut(s)	22, 484
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	4 cut(s)	245, 525, 718, 757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.