Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008346

Physical Location & Seq

Genomic Coordinates Reverse (-)

3304039 .. 3306956

Gene Structure 2918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G10120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGTGGTGAGAGTAATGAAGGAGGAGAGATGGGCTTTAAGCATGGAGATGATGAGAGTGGTGGGATCTCTAGAGTTGGAATTACATCAATGCCCTTGTATGCAAAGGCAGATCCTTTCTTCTCTTCTGCAGATTGGGATCCAGTTGTCAATGCTGCTGCTGCTGGCTTCTCCAGCTCTCATTACCATCCTTCCATGGCGATGGATAATCCAGGGATGAGTTGCTTCTCTCATTACCAACCCGGTTCTGTTTCCGGTTTTGCAGCAGACATGCCTGCTAGTCTTCTTCCGTTTGGTGATTGTGGTGGTGGTCAAATTGGTCATTTTCTTGGTTCAGACAAGAAAGGGGAAAGATTGATCAGAGCTGGAGAATCATCTCATGAGGATCATCATCAGGTTTCAGATGATGCTGTTCTTGGTGCTTCCCCAGTTGGGAAAAGAAGGCTACCTGAAGCCGAATCACAATGGAACAAGAAAGCTGTGGAGGAATTTCAAGAAGACCCTCAAAGGGGAAATGATCAGAGCCAGAAGAAGCATAAAAATGATCAGAGTAAAGAGACGGTGAACAAGGAGAGCTCACAAAGTGAAGAAGCACCGAAAGAAAACTACATTCATATGAGGGCAAGAAGAGGTCAAGCCACTAATAGTCACAGTCTTGCAGAGCGGGTTAGAAGAGAAAAGATCAGTGAAAGGATGAGATTGCTTCAAGAACTTGTTCCCGGATGCAACAAGATCACCGGAAAAGCGGTTATGCTCGATGAAATAATCAACTATGTTCAGTCATTGCAACAGCAAGTTGAGTTTTTGTCTATGAAACTTGCGACGGTGAATCCAGAGATCAATATTGATATAGACAGGATTCTCGCCAAAGATCTTCTGCAGTCAAGAGACAGAAACACTCCTACACTCGGGCTGAATCCTTTTGCCGGTTTTCAAGGGAACATACCAAACCTTTCTGCCACCACAAATCCACAATACAACCCACTACCTCAGACAACACTAGAGAGTGAACTACAAAACCTTTACCAGATGGGATTCGTCTCAAATCCATCGACTATGTCCAGTTTCTCACCTAATGGTCGATTGAAACCTGAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

366

Amino Acids

40.15

Weight (kDa)

5.61

Isoelectric Point (pI)

61.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	215 - 263	1e-06	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	221 - 266	5.3e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10100 AT1G10120 AT1G10120
fragaria_vesca	FvH4_2g32580
malus_domestica	MD08G1077000.v1.1 MD15G1064500.v1.1
prunus_persica	Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1
pyrus_communis	pycom08g06400 pycom15g06130
rosa_chinensis	RchiOBHm_Chr6g0310101
rosa_laevigata	RLG00000010511
rosa_multiflora	Rmu_sc0000294.1_g000024
rosa_roxburghii	Rroxscaffold_7G00158870
rosa_rugosa	Rorug06G0377300 Rorug06G0377400
rosa_samantha	Rh6AG491400 Rh6BG500700 Rh6CG505800 Rh6DG491700
rosa_wichuraiana	Rw6G042750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	664
AciI	CCGC	2 cut(s)	664, 746
AclWI	GGATC	5 cut(s)	74, 107, 134, 147, 393
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	471
AdeI	CACNNNGTG	1 cut(s)	584
AfiI	CCNNNNNNNGG	5 cut(s)	432, 508, 509, 908, 926
AgsI	TTSAA	4 cut(s)	494, 707, 935, 1087
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	5 cut(s)	177, 365, 479, 576, 1096
AluI	AGCT	5 cut(s)	177, 365, 479, 576, 1096
Alw21I	GWGCWC	2 cut(s)	578, 1098
Alw26I	GTCTC	3 cut(s)	551, 882, 1045
AlwI	GGATC	5 cut(s)	74, 107, 134, 147, 393
Ama87I	CYCGRG	1 cut(s)	908
ApeKI	GCWGC	4 cut(s)	155, 158, 161, 263
ApoI	RAATTY	1 cut(s)	488
Asp700I	GAANNNNTTC	1 cut(s)	714
AsuC2I	CCSGG	2 cut(s)	243, 720
AsuHPI	GGTGA	6 cut(s)	20, 308, 574, 727, 838, 1062
AvaI	CYCGRG	1 cut(s)	908
BamHI	GGATCC	1 cut(s)	139
BanII	GRGCYC	2 cut(s)	578, 1098
BbsI	GAAGAC	2 cut(s)	275, 504
Bbv12I	GWGCWC	2 cut(s)	578, 1098
BbvI	GCAGC	4 cut(s)	142, 145, 148, 275
BccI	CCATC	5 cut(s)	25, 195, 196, 1024, 1057
BciT130I	CCWGG	1 cut(s)	213
BclI	TGATCA	3 cut(s)	357, 517, 544
BcnI	CCSGG	2 cut(s)	243, 720
BcoDI	GTCTC	3 cut(s)	551, 882, 1045
BfaI	CTAG	4 cut(s)	72, 279, 1001, 1099
BfmI	CTRYAG	2 cut(s)	129, 878
BglII	AGATCT	1 cut(s)	871
BisI	GCNGC	4 cut(s)	156, 159, 162, 264
BlsI	GCNGC	4 cut(s)	157, 160, 163, 265
Bme1390I	CCNGG	3 cut(s)	213, 243, 720
BmeT110I	CYCGRG	1 cut(s)	908
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	3 cut(s)	213, 243, 720
BmrI	ACTGGG	1 cut(s)	422
BmsI	GCATC	2 cut(s)	397, 713
BmuI	ACTGGG	1 cut(s)	422
BpiI	GAAGAC	2 cut(s)	275, 504
BpmI	CTGGAG	2 cut(s)	157, 387
Bpu10I	CCTNAGC	1 cut(s)	1092
BpuMI	CCSGG	2 cut(s)	243, 720
BsaBI	GATNNNNATC	2 cut(s)	138, 390
BsaJI	CCNNGG	2 cut(s)	195, 212
BsaWI	WCCGGW	2 cut(s)	254, 737
Bsc4I	CCNNNNNNNGG	5 cut(s)	432, 508, 509, 908, 926
Bse118I	RCCGGY	1 cut(s)	926
Bse1I	ACTGG	3 cut(s)	143, 428, 1062
Bse3DI	GCAATG	1 cut(s)	782
Bse8I	GATNNNNATC	2 cut(s)	138, 390
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	2 cut(s)	195, 212
BseGI	GGATG	4 cut(s)	187, 222, 699, 728
BseJI	GATNNNNATC	2 cut(s)	138, 390
BseLI	CCNNNNNNNGG	5 cut(s)	432, 508, 509, 908, 926
BseMI	GCAATG	1 cut(s)	782
BseMII	CTCAG	2 cut(s)	1004, 1083
BseNI	ACTGG	3 cut(s)	143, 428, 1062
BseRI	GAGGAG	1 cut(s)	39
BseXI	GCAGC	4 cut(s)	142, 145, 148, 275
BsiHKAI	GWGCWC	2 cut(s)	578, 1098
BsiHKCI	CYCGRG	1 cut(s)	908
BsiSI	CCGG	5 cut(s)	243, 255, 720, 738, 927
BslI	CCNNNNNNNGG	5 cut(s)	432, 508, 509, 908, 926
BsmAI	GTCTC	3 cut(s)	551, 882, 1045
BsmBI	CGTCTC	2 cut(s)	551, 1045
BsoBI	CYCGRG	1 cut(s)	908
Bsp1286I	GDGCHC	2 cut(s)	578, 1098
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	2 cut(s)	664, 746
BspCNI	CTCAG	2 cut(s)	1003, 1084
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	141
BspMAI	CTGCAG	2 cut(s)	133, 882
BspPI	GGATC	5 cut(s)	74, 107, 134, 147, 393
BsrBI	CCGCTC	1 cut(s)	664
BsrDI	GCAATG	1 cut(s)	782
BsrFI	RCCGGY	1 cut(s)	926
BsrI	ACTGG	3 cut(s)	143, 428, 1062
BssAI	RCCGGY	1 cut(s)	926
BssECI	CCNNGG	2 cut(s)	195, 212
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	3 cut(s)	562, 653, 826
Bst6I	CTCTTC	3 cut(s)	130, 622, 667
BstC8I	GCNNGC	2 cut(s)	166, 276
BstDEI	CTNAG	2 cut(s)	990, 1092
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	4 cut(s)	187, 222, 699, 728
BstMAI	GTCTC	3 cut(s)	551, 882, 1045
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 174
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	3 cut(s)	211, 241, 718
BstSFI	CTRYAG	2 cut(s)	129, 878
BstV1I	GCAGC	4 cut(s)	142, 145, 148, 275
BstV2I	GAAGAC	2 cut(s)	275, 504
BstX2I	RGATCY	4 cut(s)	66, 112, 139, 871
BstXI	CCANNNNNNTGG	1 cut(s)	202
BstYI	RGATCY	4 cut(s)	66, 112, 139, 871
BtgI	CCRYGG	1 cut(s)	195
BtgZI	GCGATG	1 cut(s)	215
BtsCI	GGATG	4 cut(s)	187, 222, 699, 728
BtsIMutI	CAGTG	1 cut(s)	691
Cac8I	GCNNGC	2 cut(s)	166, 276
CciI	TCATGA	1 cut(s)	379
Cfr10I	RCCGGY	1 cut(s)	926
CviAII	CATG	4 cut(s)	44, 196, 271, 380
DdeI	CTNAG	2 cut(s)	990, 1092
DraIII	CACNNNGTG	1 cut(s)	584
Eam1104I	CTCTTC	3 cut(s)	130, 622, 667
EarI	CTCTTC	3 cut(s)	130, 622, 667
Ecl136II	GAGCTC	2 cut(s)	576, 1096
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	2 cut(s)	578, 1098
Eco53kI	GAGCTC	2 cut(s)	576, 1096
Eco57I	CTGAAG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	908
EcoICRI	GAGCTC	2 cut(s)	576, 1096
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	2 cut(s)	578, 1098
ErhI	CCWWGG	1 cut(s)	195
Esp3I	CGTCTC	2 cut(s)	551, 1045
FaeI	CATG	4 cut(s)	47, 199, 274, 383
FatI	CATG	4 cut(s)	43, 195, 270, 379
FauI	CCCGC	1 cut(s)	657
FauNDI	CATATG	1 cut(s)	615
FbaI	TGATCA	3 cut(s)	357, 517, 544
Fnu4HI	GCNGC	4 cut(s)	156, 159, 162, 264
FokI	GGATG	4 cut(s)	174, 229, 706, 735
FriOI	GRGCYC	2 cut(s)	578, 1098
Fsp4HI	GCNGC	4 cut(s)	156, 159, 162, 264
FspBI	CTAG	4 cut(s)	72, 279, 1001, 1099
GluI	GCNGC	4 cut(s)	156, 159, 162, 264
GsuI	CTGGAG	2 cut(s)	157, 387
HapII	CCGG	5 cut(s)	243, 255, 720, 738, 927
Hin1II	CATG	4 cut(s)	47, 199, 274, 383
HinfI	GANTC	6 cut(s)	371, 458, 829, 859, 916, 1035
HpaII	CCGG	5 cut(s)	243, 255, 720, 738, 927
HphI	GGTGA	6 cut(s)	20, 308, 574, 727, 838, 1062
Hpy166II	GTNNAC	2 cut(s)	565, 1010
Hpy188I	TCNGA	6 cut(s)	337, 362, 403, 522, 549, 993
Hpy188III	TCNNGA	6 cut(s)	72, 380, 494, 707, 833, 885
Hpy8I	GTNNAC	2 cut(s)	565, 1010
Hpy99I	CGWCG	1 cut(s)	826
HpyAV	CCTTC	3 cut(s)	14, 201, 435
HpyCH4III	ACNGT	3 cut(s)	562, 653, 826
HpyCH4V	TGCA	7 cut(s)	104, 131, 263, 659, 726, 787, 880
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 174
HpyF3I	CTNAG	2 cut(s)	990, 1092
Hsp92II	CATG	4 cut(s)	47, 199, 274, 383
Ksp22I	TGATCA	3 cut(s)	357, 517, 544
Lsp1109I	GCAGC	4 cut(s)	142, 145, 148, 275
LweI	GCATC	2 cut(s)	397, 713
MaeI	CTAG	4 cut(s)	72, 279, 1001, 1099
MaeIII	GTNAC	1 cut(s)	647
MbiI	CCGCTC	1 cut(s)	664
MflI	RGATCY	4 cut(s)	66, 112, 139, 871
MhlI	GDGCHC	2 cut(s)	578, 1098
MluCI	AATT	3 cut(s)	81, 315, 488
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	7 cut(s)	17, 376, 478, 513, 612, 623, 999
MroXI	GAANNNNTTC	1 cut(s)	714
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	4 cut(s)	48, 200, 540, 614
MspI	CCGG	5 cut(s)	243, 255, 720, 738, 927
MspR9I	CCNGG	3 cut(s)	213, 243, 720
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	161, 174
NciI	CCSGG	2 cut(s)	243, 720
NcoI	CCATGG	1 cut(s)	195
NdeI	CATATG	1 cut(s)	615
NlaIII	CATG	4 cut(s)	47, 199, 274, 383
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	647
NspI	RCATGY	1 cut(s)	274
PagI	TCATGA	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	714
PfeI	GAWTC	6 cut(s)	371, 458, 829, 859, 916, 1035
PflFI	GACNNNGTC	1 cut(s)	1057
PfoI	TCCNGGA	1 cut(s)	718
PkrI	GCNGC	4 cut(s)	157, 160, 163, 265
Psp124BI	GAGCTC	2 cut(s)	578, 1098
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	141
PstI	CTGCAG	2 cut(s)	133, 882
PsuI	RGATCY	4 cut(s)	66, 112, 139, 871
PsyI	GACNNNGTC	1 cut(s)	1057
RseI	CAYNNNNRTG	4 cut(s)	48, 200, 540, 614
SacI	GAGCTC	2 cut(s)	578, 1098
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	4 cut(s)	156, 159, 162, 264
ScrFI	CCNGG	3 cut(s)	213, 243, 720
SduI	GDGCHC	2 cut(s)	578, 1098
SfaNI	GCATC	2 cut(s)	397, 713
SfcI	CTRYAG	2 cut(s)	129, 878
SmiMI	CAYNNNNRTG	4 cut(s)	48, 200, 540, 614
Sse9I	AATT	3 cut(s)	81, 315, 488
SsiI	CCGC	2 cut(s)	664, 746
SspI	AATATT	1 cut(s)	844
SspMI	CTAG	4 cut(s)	72, 279, 1001, 1099
SstI	GAGCTC	2 cut(s)	578, 1098
StyD4I	CCNGG	3 cut(s)	211, 241, 718
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	3 cut(s)	562, 653, 826
TaqI	TCGA	3 cut(s)	756, 1052, 1081
TasI	AATT	3 cut(s)	81, 315, 488
TfiI	GAWTC	6 cut(s)	371, 458, 829, 859, 916, 1035
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	1 cut(s)	691
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	4 cut(s)	155, 158, 161, 263
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	4 cut(s)	33, 602, 774, 827
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	691
Tth111I	GACNNNGTC	1 cut(s)	1057
XapI	RAATTY	1 cut(s)	488
XbaI	TCTAGA	1 cut(s)	71
XceI	RCATGY	1 cut(s)	274
XmnI	GAANNNNTTC	1 cut(s)	714
XspI	CTAG	4 cut(s)	72, 279, 1001, 1099

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.