Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000294.1

Orthogroup ID

OG0008346

Physical Location & Seq

Genomic Coordinates Forward (+)

130550 .. 132640

Gene Structure 2091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000294.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

atgggtagtcatgacaatgaggatatggggttccaacataggaatgagggtactctgaattgtccctcttcagggatgagcaccaatccactgcctgaaaaggtttcaagaatggcaatgagttcaggctctatttttaagccttcaaatgcacctgaccctttctttggttctggttgggatccacttgtttcattgagtcaaagtgataactttggaggttcctcagttgcttctcagagtgaatttaccaatcctccttaccctatagcgatcgaaactcagggaatgagtagcacatcccaccttgttcaatatccatctgattcgagttatgttgagatggttccaaagcttccatgttttggaagtgggagcttctcagaaatggtgggttcttttggcctgcctgagtgtgctgggatttctaaccctgggtgtgttgcaaactataacccaaacagggatggaggcattgataggacttcaacaatgggcacacaatcgcttgatgatcgccaagtatccgaagagggtgctttaggatcttcacctaatggcaggagaaggaagcgagttcctgaatccagtccaaataagaatgctgaaggggagcttaacaaggatatgtctggggaaagctctgattacctgaaagaacaagatgagaaaaaaaccaagctggaagaaaacacagctgcaaatttgcgtggtaagcaggcgggcaaacagactaaagagaattctcaaagtggagatgctgcaaaagatagttacattcatgtgagagctagaaggggccaggctacaaatagtcatagccttgcagaaagggtaagaagagaaaagatcagtgagaggatgagattgcttcaagaacttgttccagggtgcaataagataactgggaaggctgtaatgcttgatgagatcatcaactatgtgcaatctctgcaacagcaagttgagtttttatcaatgaaactcgcaacagtaaatccagaagtgaacattgatatagaacggattctatcgaaagatattatgaatccacggaatggcagtggagctattttcgggtttagtcctggaatgaactcttctcacccataccctcatggtattttccagggaaactcgcaaaatatgccaatcacagctcctcaatttccttccttgcctcagactgtattggacaatgagctccaaggtctatttcatatgggttttgattcgagttcgaatattgattgcttgggacaaaatgcaagccgcatgaaaccagagcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

430

Amino Acids

46.75

Weight (kDa)

5.51

Isoelectric Point (pI)

60.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10100 AT1G10120 AT1G10120
fragaria_vesca	FvH4_2g32580
malus_domestica	MD08G1077000.v1.1 MD15G1064500.v1.1
prunus_persica	Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1
pyrus_communis	pycom08g06400 pycom15g06130
rosa_chinensis	RchiOBHm_Chr6g0310101
rosa_laevigata	RLG00000010511
rosa_multiflora	Rmu_sc0000294.1_g000024
rosa_roxburghii	Rroxscaffold_7G00158870
rosa_rugosa	Rorug06G0377300 Rorug06G0377400
rosa_samantha	Rh6AG491400 Rh6BG500700 Rh6CG505800 Rh6DG491700
rosa_wichuraiana	Rw6G042750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	365, 1058
AciI	CCGC	2 cut(s)	722, 1273
AclWI	GGATC	3 cut(s)	176, 189, 553
AcsI	RAATTY	3 cut(s)	245, 703, 742
AcuI	CTGAAG	2 cut(s)	54, 627
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	6 cut(s)	71, 72, 167, 365, 463, 1058
AgsI	TTSAA	5 cut(s)	108, 147, 314, 489, 875
AjnI	CCWGG	5 cut(s)	433, 801, 886, 1087, 1128
AjuI	GAANNNNNNNTTGG	2 cut(s)	1200, 1232
AloI	GAACNNNNNNTCC	2 cut(s)	14, 46
Alw21I	GWGCWC	2 cut(s)	83, 1206
AlwI	GGATC	3 cut(s)	176, 189, 553
AoxI	GGCC	2 cut(s)	403, 799
ApeKI	GCWGC	2 cut(s)	698, 761
ApoI	RAATTY	3 cut(s)	245, 703, 742
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Asp700I	GAANNNNTTC	2 cut(s)	882, 1026
AspS9I	GGNCC	1 cut(s)	799
AsuHPI	GGTGA	2 cut(s)	543, 1097
AsuII	TTCGAA	1 cut(s)	1241
BaeGI	GKGCMC	1 cut(s)	500
BamHI	GGATCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	1206
Bbv12I	GWGCWC	2 cut(s)	83, 1206
BbvI	GCAGC	2 cut(s)	685, 748
BccI	CCATC	3 cut(s)	328, 337, 461
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BciT130I	CCWGG	5 cut(s)	435, 803, 888, 1089, 1130
BciVI	GTATCC	1 cut(s)	535
BfaI	CTAG	1 cut(s)	792
BfmI	CTRYAG	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	535
BisI	GCNGC	3 cut(s)	699, 762, 1273
BlsI	GCNGC	3 cut(s)	700, 763, 1274
Bme1390I	CCNGG	5 cut(s)	435, 803, 888, 1089, 1130
BmgT120I	GGNCC	1 cut(s)	799
BmiI	GGNNCC	5 cut(s)	32, 183, 223, 348, 800
BmrFI	CCNGG	5 cut(s)	435, 803, 888, 1089, 1130
BmrI	ACTGGG	1 cut(s)	915
BmsI	GCATC	1 cut(s)	748
BmuI	ACTGGG	1 cut(s)	915
Bpu14I	TTCGAA	1 cut(s)	1241
BsaJI	CCNNGG	6 cut(s)	433, 434, 887, 1052, 1129, 1207
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	6 cut(s)	71, 72, 167, 365, 463, 1058
Bse1I	ACTGG	2 cut(s)	588, 910
Bse3DI	GCAATG	1 cut(s)	123
BseBI	CCWGG	5 cut(s)	435, 803, 888, 1089, 1130
BseDI	CCNNGG	6 cut(s)	433, 434, 887, 1052, 1129, 1207
BseGI	GGATG	4 cut(s)	81, 299, 472, 867
BseLI	CCNNNNNNNGG	6 cut(s)	71, 72, 167, 365, 463, 1058
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	6 cut(s)	240, 251, 296, 396, 402, 1196
BseNI	ACTGG	2 cut(s)	588, 910
BseRI	GAGGAG	1 cut(s)	1152
BseSI	GKGCMC	1 cut(s)	500
BseXI	GCAGC	2 cut(s)	685, 748
BseYI	CCCAGC	1 cut(s)	419
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	405, 801
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	2 cut(s)	83, 1206
BslFI	GGGAC	2 cut(s)	48, 1272
BslI	CCNNNNNNNGG	6 cut(s)	71, 72, 167, 365, 463, 1058
BsmFI	GGGAC	2 cut(s)	48, 1272
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	2 cut(s)	405, 801
Bsp119I	TTCGAA	1 cut(s)	1241
Bsp1286I	GDGCHC	3 cut(s)	83, 500, 1206
Bsp143I	GATC	6 cut(s)	181, 273, 514, 545, 849, 930
BspACI	CCGC	2 cut(s)	722, 1273
BspANI	GGCC	2 cut(s)	405, 801
BspCNI	CTCAG	6 cut(s)	239, 250, 295, 395, 403, 1195
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	5 cut(s)	32, 183, 223, 348, 800
BspPI	GGATC	3 cut(s)	176, 189, 553
BspT104I	TTCGAA	1 cut(s)	1241
BsrDI	GCAATG	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	588, 910
BssECI	CCNNGG	6 cut(s)	433, 434, 887, 1052, 1129, 1207
BssMI	GATC	6 cut(s)	181, 273, 514, 545, 849, 930
BssT1I	CCWWGG	1 cut(s)	1207
Bst2UI	CCWGG	5 cut(s)	435, 803, 888, 1089, 1130
Bst4CI	ACNGT	2 cut(s)	994, 1189
Bst6I	CTCTTC	4 cut(s)	73, 525, 835, 1105
BstAPI	GCANNNNNTGC	2 cut(s)	952, 1147
BstBI	TTCGAA	1 cut(s)	1241
BstC8I	GCNNGC	4 cut(s)	407, 720, 724, 1270
BstDEI	CTNAG	6 cut(s)	226, 237, 282, 382, 411, 1182
BstDSI	CCRYGG	1 cut(s)	1052
BstF5I	GGATG	4 cut(s)	81, 299, 472, 867
BstKTI	GATC	6 cut(s)	184, 276, 517, 548, 852, 933
BstMBI	GATC	6 cut(s)	181, 273, 514, 545, 849, 930
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	3 cut(s)	715, 952, 1147
BstNI	CCWGG	5 cut(s)	435, 803, 888, 1089, 1130
BstSCI	CCNGG	5 cut(s)	433, 801, 886, 1087, 1128
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	500
BstV1I	GCAGC	2 cut(s)	685, 748
BstX2I	RGATCY	2 cut(s)	181, 545
BstYI	RGATCY	2 cut(s)	181, 545
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	2 cut(s)	405, 801
BtgI	CCRYGG	1 cut(s)	1052
BtsCI	GGATG	4 cut(s)	81, 299, 472, 867
BtsI	GCAGTG	2 cut(s)	89, 1069
BtsIMutI	CAGTG	3 cut(s)	89, 859, 1069
Cac8I	GCNNGC	4 cut(s)	407, 720, 724, 1270
CciI	TCATGA	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	799
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	5 cut(s)	11, 360, 782, 1118, 1276
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	6 cut(s)	226, 237, 282, 382, 411, 1182
DpnI	GATC	6 cut(s)	183, 275, 516, 547, 851, 932
DpnII	GATC	6 cut(s)	181, 273, 514, 545, 849, 930
Eam1104I	CTCTTC	4 cut(s)	73, 525, 835, 1105
EarI	CTCTTC	4 cut(s)	73, 525, 835, 1105
Ecl136II	GAGCTC	1 cut(s)	1204
Eco130I	CCWWGG	1 cut(s)	1207
Eco24I	GRGCYC	1 cut(s)	1206
Eco53kI	GAGCTC	1 cut(s)	1204
Eco57I	CTGAAG	2 cut(s)	54, 627
EcoICRI	GAGCTC	1 cut(s)	1204
EcoRI	GAATTC	1 cut(s)	742
EcoRII	CCWGG	5 cut(s)	433, 801, 886, 1087, 1128
EcoT14I	CCWWGG	1 cut(s)	1207
EcoT38I	GRGCYC	1 cut(s)	1206
ErhI	CCWWGG	1 cut(s)	1207
FaeI	CATG	5 cut(s)	14, 363, 785, 1121, 1279
FalI	AAGNNNNNCTT	2 cut(s)	600, 632
FaqI	GGGAC	2 cut(s)	48, 1272
FatI	CATG	5 cut(s)	10, 359, 781, 1117, 1275
FauI	CCCGC	1 cut(s)	715
FauNDI	CATATG	1 cut(s)	1221
Fnu4HI	GCNGC	3 cut(s)	699, 762, 1273
FokI	GGATG	4 cut(s)	88, 286, 479, 874
FriOI	GRGCYC	1 cut(s)	1206
Fsp4HI	GCNGC	3 cut(s)	699, 762, 1273
FspBI	CTAG	1 cut(s)	792
GluI	GCNGC	3 cut(s)	699, 762, 1273
GsaI	CCCAGC	1 cut(s)	423
HaeIII	GGCC	2 cut(s)	405, 801
Hin1II	CATG	5 cut(s)	14, 363, 785, 1121, 1279
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	6 cut(s)	199, 326, 584, 1027, 1048, 1232
HphI	GGTGA	2 cut(s)	543, 1097
Hpy166II	GTNNAC	1 cut(s)	1009
Hpy188I	TCNGA	7 cut(s)	57, 240, 325, 385, 529, 646, 1185
Hpy188III	TCNNGA	5 cut(s)	11, 108, 581, 875, 1001
Hpy8I	GTNNAC	1 cut(s)	1009
HpyAV	CCTTC	6 cut(s)	153, 561, 602, 789, 904, 1182
HpyCH4III	ACNGT	2 cut(s)	994, 1189
HpyCH4V	TGCA	9 cut(s)	152, 446, 701, 764, 827, 894, 946, 955, 1268
HpyF10VI	GCNNNNNNNGC	3 cut(s)	715, 952, 1147
HpyF3I	CTNAG	6 cut(s)	226, 237, 282, 382, 411, 1182
Hsp92II	CATG	5 cut(s)	14, 363, 785, 1121, 1279
Kzo9I	GATC	6 cut(s)	181, 273, 514, 545, 849, 930
LmnI	GCTCC	5 cut(s)	375, 613, 1067, 1165, 1209
Lsp1109I	GCAGC	2 cut(s)	685, 748
LweI	GCATC	1 cut(s)	748
MaeI	CTAG	1 cut(s)	792
MaeIII	GTNAC	1 cut(s)	773
MalI	GATC	6 cut(s)	183, 275, 516, 547, 851, 932
MboI	GATC	6 cut(s)	181, 273, 514, 545, 849, 930
MboII	GAAGA	6 cut(s)	60, 540, 542, 698, 852, 1092
MflI	RGATCY	2 cut(s)	181, 545
MhlI	GDGCHC	3 cut(s)	83, 500, 1206
MluCI	AATT	5 cut(s)	58, 245, 703, 742, 1166
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	1 cut(s)	58
MroXI	GAANNNNTTC	2 cut(s)	882, 1026
MseI	TTAA	2 cut(s)	138, 618
MslI	CAYNNNNRTG	3 cut(s)	15, 42, 782
MspA1I	CMGCKG	1 cut(s)	698
MspR9I	CCNGG	5 cut(s)	435, 803, 888, 1089, 1130
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	5 cut(s)	435, 803, 888, 1089, 1130
MwoI	GCNNNNNNNGC	3 cut(s)	715, 952, 1147
NdeI	CATATG	1 cut(s)	1221
NdeII	GATC	6 cut(s)	181, 273, 514, 545, 849, 930
NlaIII	CATG	5 cut(s)	14, 363, 785, 1121, 1279
NlaIV	GGNNCC	5 cut(s)	32, 183, 223, 348, 800
NspV	TTCGAA	1 cut(s)	1241
PagI	TCATGA	1 cut(s)	10
PasI	CCCWGGG	1 cut(s)	434
PctI	GAATGC	1 cut(s)	607
PdmI	GAANNNNTTC	2 cut(s)	882, 1026
PfeI	GAWTC	5 cut(s)	326, 584, 1027, 1048, 1232
PflMI	CCANNNNNTGG	2 cut(s)	365, 1058
PfoI	TCCNGGA	1 cut(s)	1087
PkrI	GCNGC	3 cut(s)	700, 763, 1274
Ple19I	CGATCG	1 cut(s)	276
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	1206
Psp6I	CCWGG	5 cut(s)	433, 801, 886, 1087, 1128
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	5 cut(s)	433, 801, 886, 1087, 1128
PspN4I	GGNNCC	5 cut(s)	32, 183, 223, 348, 800
PspPI	GGNCC	1 cut(s)	799
PsuI	RGATCY	2 cut(s)	181, 545
PvuI	CGATCG	1 cut(s)	276
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
RseI	CAYNNNNRTG	3 cut(s)	15, 42, 782
SacI	GAGCTC	1 cut(s)	1206
SaqAI	TTAA	2 cut(s)	138, 618
SatI	GCNGC	3 cut(s)	699, 762, 1273
Sau3AI	GATC	6 cut(s)	181, 273, 514, 545, 849, 930
Sau96I	GGNCC	1 cut(s)	799
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	5 cut(s)	435, 803, 888, 1089, 1130
SduI	GDGCHC	3 cut(s)	83, 500, 1206
SfaNI	GCATC	1 cut(s)	748
SfcI	CTRYAG	1 cut(s)	267
SfuI	TTCGAA	1 cut(s)	1241
SmiMI	CAYNNNNRTG	3 cut(s)	15, 42, 782
Sse9I	AATT	5 cut(s)	58, 245, 703, 742, 1166
SsiI	CCGC	2 cut(s)	722, 1273
SspI	AATATT	1 cut(s)	1246
SspMI	CTAG	1 cut(s)	792
SstI	GAGCTC	1 cut(s)	1206
StyD4I	CCNGG	5 cut(s)	433, 801, 886, 1087, 1128
StyI	CCWWGG	1 cut(s)	1207
TaaI	ACNGT	2 cut(s)	994, 1189
TaqI	TCGA	5 cut(s)	276, 329, 1034, 1235, 1241
TasI	AATT	5 cut(s)	58, 245, 703, 742, 1166
TauI	GCSGC	1 cut(s)	1275
TfiI	GAWTC	5 cut(s)	326, 584, 1027, 1048, 1232
Tru1I	TTAA	2 cut(s)	138, 618
Tru9I	TTAA	2 cut(s)	138, 618
TscAI	CASTG	3 cut(s)	96, 859, 1069
TseI	GCWGC	2 cut(s)	698, 761
TspDTI	ATGAA	7 cut(s)	183, 770, 995, 1061, 1109, 1208, 1292
TspGWI	ACGGA	2 cut(s)	1039, 1069
TspRI	CASTG	3 cut(s)	96, 859, 1069
Van91I	CCANNNNNTGG	2 cut(s)	365, 1058
XapI	RAATTY	3 cut(s)	245, 703, 742
XmnI	GAANNNNTTC	2 cut(s)	882, 1026
XspI	CTAG	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.