transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G10100 AT1G10120 AT1G10120 |
| fragaria_vesca | FvH4_2g32580 |
| malus_domestica | MD08G1077000.v1.1 MD15G1064500.v1.1 |
| prunus_persica | Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 |
| pyrus_communis | pycom08g06400 pycom15g06130 |
| rosa_chinensis | RchiOBHm_Chr6g0310101 |
| rosa_laevigata | RLG00000010511 |
| rosa_multiflora | Rmu_sc0000294.1_g000024 |
| rosa_roxburghii | Rroxscaffold_7G00158870 |
| rosa_rugosa | Rorug06G0377300 Rorug06G0377400 |
| rosa_samantha | Rh6AG491400 Rh6BG500700 Rh6CG505800 Rh6DG491700 |
| rosa_wichuraiana | Rw6G042750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 346, 497 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 365 |
| AccBSI | CCGCTC | 2 cut(s) | 765, 868 |
| AccII | CGCG | 2 cut(s) | 723, 998 |
| AciI | CCGC | 4 cut(s) | 723, 765, 868, 1282 |
| AclWI | GGATC | 4 cut(s) | 176, 189, 553, 645 |
| AcsI | RAATTY | 3 cut(s) | 245, 522, 715 |
| AcuI | CTGAAG | 3 cut(s) | 54, 210, 639 |
| AcyI | GRCGYC | 1 cut(s) | 498 |
| AdeI | CACNNNGTG | 2 cut(s) | 557, 1067 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 71, 149, 167, 365, 463, 480, 526 |
| AgsI | TTSAA | 8 cut(s) | 35, 147, 314, 330, 489, 698, 884, 1288 |
| AjnI | CCWGG | 4 cut(s) | 433, 895, 1096, 1138 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 581, 613 |
| Alw21I | GWGCWC | 5 cut(s) | 83, 125, 421, 656, 1215 |
| AlwI | GGATC | 4 cut(s) | 176, 189, 553, 645 |
| AoxI | GGCC | 3 cut(s) | 403, 471, 1279 |
| ApaI | GGGCCC | 1 cut(s) | 475 |
| ApeKI | GCWGC | 2 cut(s) | 443, 710 |
| ApoI | RAATTY | 3 cut(s) | 245, 522, 715 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 149, 181 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 891, 1035 |
| AspLEI | GCGC | 2 cut(s) | 500, 723 |
| AspS9I | GGNCC | 2 cut(s) | 471, 472 |
| AsuC2I | CCSGG | 1 cut(s) | 285 |
| AsuHPI | GGTGA | 3 cut(s) | 296, 543, 1106 |
| BaeGI | GKGCMC | 1 cut(s) | 475 |
| BamHI | GGATCC | 1 cut(s) | 181 |
| BanI | GGYRCC | 2 cut(s) | 346, 497 |
| BanII | GRGCYC | 4 cut(s) | 125, 475, 656, 1215 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 767, 799 |
| BbsI | GAAGAC | 1 cut(s) | 705 |
| Bbv12I | GWGCWC | 5 cut(s) | 83, 125, 421, 656, 1215 |
| BbvI | GCAGC | 2 cut(s) | 430, 697 |
| BccI | CCATC | 3 cut(s) | 17, 73, 328 |
| BciT130I | CCWGG | 4 cut(s) | 435, 897, 1098, 1140 |
| BciVI | GTATCC | 1 cut(s) | 139 |
| BcnI | CCSGG | 1 cut(s) | 285 |
| BfaI | CTAG | 1 cut(s) | 1245 |
| BfoI | RGCGCY | 1 cut(s) | 501 |
| BfuI | GTATCC | 1 cut(s) | 139 |
| BisI | GCNGC | 3 cut(s) | 444, 711, 1282 |
| BlsI | GCNGC | 3 cut(s) | 445, 712, 1283 |
| Bme1390I | CCNGG | 5 cut(s) | 285, 435, 897, 1098, 1140 |
| BmgT120I | GGNCC | 2 cut(s) | 471, 472 |
| BmiI | GGNNCC | 6 cut(s) | 183, 348, 472, 473, 474, 499 |
| BmrFI | CCNGG | 5 cut(s) | 285, 435, 897, 1098, 1140 |
| BmrI | ACTGGG | 2 cut(s) | 549, 924 |
| BmsI | GCATC | 2 cut(s) | 760, 890 |
| BmuI | ACTGGG | 2 cut(s) | 549, 924 |
| BpiI | GAAGAC | 1 cut(s) | 705 |
| BpuMI | CCSGG | 1 cut(s) | 285 |
| Bsa29I | ATCGAT | 1 cut(s) | 1023 |
| BsaHI | GRCGYC | 1 cut(s) | 498 |
| BsaJI | CCNNGG | 4 cut(s) | 433, 434, 1138, 1216 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 71, 149, 167, 365, 463, 480, 526 |
| Bse1I | ACTGG | 2 cut(s) | 555, 919 |
| BseBI | CCWGG | 4 cut(s) | 435, 897, 1098, 1140 |
| BseCI | ATCGAT | 1 cut(s) | 1023 |
| BseDI | CCNNGG | 4 cut(s) | 433, 434, 1138, 1216 |
| BseGI | GGATG | 4 cut(s) | 28, 81, 876, 905 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 71, 149, 167, 365, 463, 480, 526 |
| BseMII | CTCAG | 6 cut(s) | 396, 402, 434, 468, 773, 1205 |
| BseNI | ACTGG | 2 cut(s) | 555, 919 |
| BseSI | GKGCMC | 1 cut(s) | 475 |
| BseXI | GCAGC | 2 cut(s) | 430, 697 |
| Bsh1236I | CGCG | 2 cut(s) | 723, 998 |
| BshFI | GGCC | 3 cut(s) | 405, 473, 1281 |
| BshNI | GGYRCC | 2 cut(s) | 346, 497 |
| BshVI | ATCGAT | 1 cut(s) | 1023 |
| BsiHKAI | GWGCWC | 5 cut(s) | 83, 125, 421, 656, 1215 |
| BsiSI | CCGG | 1 cut(s) | 284 |
| BslFI | GGGAC | 1 cut(s) | 1281 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 71, 149, 167, 365, 463, 480, 526 |
| BsmFI | GGGAC | 1 cut(s) | 1281 |
| BsmI | GAATGC | 2 cut(s) | 596, 619 |
| BsnI | GGCC | 3 cut(s) | 405, 473, 1281 |
| Bsp120I | GGGCCC | 1 cut(s) | 471 |
| Bsp1286I | GDGCHC | 6 cut(s) | 83, 125, 421, 475, 656, 1215 |
| Bsp143I | GATC | 5 cut(s) | 181, 514, 545, 637, 939 |
| Bsp68I | TCGCGA | 1 cut(s) | 998 |
| BspACI | CCGC | 4 cut(s) | 723, 765, 868, 1282 |
| BspANI | GGCC | 3 cut(s) | 405, 473, 1281 |
| BspCNI | CTCAG | 6 cut(s) | 395, 403, 433, 469, 772, 1204 |
| BspDI | ATCGAT | 1 cut(s) | 1023 |
| BspFNI | CGCG | 2 cut(s) | 723, 998 |
| BspHI | TCATGA | 2 cut(s) | 10, 508 |
| BspLI | GGNNCC | 6 cut(s) | 183, 348, 472, 473, 474, 499 |
| BspPI | GGATC | 4 cut(s) | 176, 189, 553, 645 |
| BspQI | GCTCTTC | 1 cut(s) | 1114 |
| BspT107I | GGYRCC | 2 cut(s) | 346, 497 |
| BsrBI | CCGCTC | 2 cut(s) | 765, 868 |
| BsrI | ACTGG | 2 cut(s) | 555, 919 |
| BssECI | CCNNGG | 4 cut(s) | 433, 434, 1138, 1216 |
| BssMI | GATC | 5 cut(s) | 181, 514, 545, 637, 939 |
| BssNI | GRCGYC | 1 cut(s) | 498 |
| BssT1I | CCWWGG | 1 cut(s) | 1216 |
| Bst2UI | CCWGG | 4 cut(s) | 435, 897, 1098, 1140 |
| Bst4CI | ACNGT | 5 cut(s) | 17, 782, 1003, 1198, 1208 |
| Bst6I | CTCTTC | 3 cut(s) | 525, 844, 1114 |
| BstACI | GRCGYC | 1 cut(s) | 498 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 961 |
| BstC8I | GCNNGC | 1 cut(s) | 1279 |
| BstDEI | CTNAG | 6 cut(s) | 382, 411, 420, 477, 759, 1191 |
| BstF5I | GGATG | 4 cut(s) | 28, 81, 876, 905 |
| BstFNI | CGCG | 2 cut(s) | 723, 998 |
| BstH2I | RGCGCY | 1 cut(s) | 501 |
| BstHHI | GCGC | 2 cut(s) | 500, 723 |
| BstKTI | GATC | 5 cut(s) | 184, 517, 548, 640, 942 |
| BstMBI | GATC | 5 cut(s) | 181, 514, 545, 637, 939 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 425, 727, 961, 1156 |
| BstNI | CCWGG | 4 cut(s) | 435, 897, 1098, 1140 |
| BstSCI | CCNGG | 5 cut(s) | 283, 433, 895, 1096, 1138 |
| BstSLI | GKGCMC | 1 cut(s) | 475 |
| BstUI | CGCG | 2 cut(s) | 723, 998 |
| BstV1I | GCAGC | 2 cut(s) | 430, 697 |
| BstV2I | GAAGAC | 1 cut(s) | 705 |
| BstX2I | RGATCY | 3 cut(s) | 181, 545, 637 |
| BstYI | RGATCY | 3 cut(s) | 181, 545, 637 |
| Bsu15I | ATCGAT | 1 cut(s) | 1023 |
| BsuI | GTATCC | 1 cut(s) | 139 |
| BsuRI | GGCC | 3 cut(s) | 405, 473, 1281 |
| BsuTUI | ATCGAT | 1 cut(s) | 1023 |
| BtsCI | GGATG | 4 cut(s) | 28, 81, 876, 905 |
| BtsI | GCAGTG | 2 cut(s) | 89, 1078 |
| BtsIMutI | CAGTG | 5 cut(s) | 22, 89, 562, 1078, 1213 |
| BtuMI | TCGCGA | 1 cut(s) | 998 |
| Cac8I | GCNNGC | 1 cut(s) | 1279 |
| CciI | TCATGA | 2 cut(s) | 10, 508 |
| CfoI | GCGC | 2 cut(s) | 500, 723 |
| Cfr13I | GGNCC | 2 cut(s) | 471, 472 |
| ClaI | ATCGAT | 1 cut(s) | 1023 |
| CviAII | CATG | 6 cut(s) | 11, 133, 360, 509, 791, 1127 |
| DdeI | CTNAG | 6 cut(s) | 382, 411, 420, 477, 759, 1191 |
| DinI | GGCGCC | 1 cut(s) | 499 |
| DpnI | GATC | 5 cut(s) | 183, 516, 547, 639, 941 |
| DpnII | GATC | 5 cut(s) | 181, 514, 545, 637, 939 |
| DraIII | CACNNNGTG | 2 cut(s) | 557, 1067 |
| Eam1104I | CTCTTC | 3 cut(s) | 525, 844, 1114 |
| EarI | CTCTTC | 3 cut(s) | 525, 844, 1114 |
| Ecl136II | GAGCTC | 3 cut(s) | 123, 654, 1213 |
| Eco130I | CCWWGG | 1 cut(s) | 1216 |
| Eco24I | GRGCYC | 4 cut(s) | 125, 475, 656, 1215 |
| Eco53kI | GAGCTC | 3 cut(s) | 123, 654, 1213 |
| Eco57I | CTGAAG | 3 cut(s) | 54, 210, 639 |
| EcoICRI | GAGCTC | 3 cut(s) | 123, 654, 1213 |
| EcoO109I | RGGNCCY | 2 cut(s) | 471, 472 |
| EcoRII | CCWGG | 4 cut(s) | 433, 895, 1096, 1138 |
| EcoT14I | CCWWGG | 1 cut(s) | 1216 |
| EcoT38I | GRGCYC | 4 cut(s) | 125, 475, 656, 1215 |
| EgeI | GGCGCC | 1 cut(s) | 499 |
| EheI | GGCGCC | 1 cut(s) | 499 |
| ErhI | CCWWGG | 1 cut(s) | 1216 |
| FaeI | CATG | 6 cut(s) | 14, 136, 363, 512, 794, 1130 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1038, 1070 |
| FaqI | GGGAC | 1 cut(s) | 1281 |
| FatI | CATG | 6 cut(s) | 10, 132, 359, 508, 790, 1126 |
| FauNDI | CATATG | 1 cut(s) | 1230 |
| Fnu4HI | GCNGC | 3 cut(s) | 444, 711, 1282 |
| FokI | GGATG | 4 cut(s) | 35, 88, 883, 912 |
| FriOI | GRGCYC | 4 cut(s) | 125, 475, 656, 1215 |
| Fsp4HI | GCNGC | 3 cut(s) | 444, 711, 1282 |
| FspBI | CTAG | 1 cut(s) | 1245 |
| GlaI | GCGC | 2 cut(s) | 499, 722 |
| GluI | GCNGC | 3 cut(s) | 444, 711, 1282 |
| HaeII | RGCGCY | 1 cut(s) | 501 |
| HaeIII | GGCC | 3 cut(s) | 405, 473, 1281 |
| HapII | CCGG | 1 cut(s) | 284 |
| HhaI | GCGC | 2 cut(s) | 500, 723 |
| Hin1I | GRCGYC | 1 cut(s) | 498 |
| Hin1II | CATG | 6 cut(s) | 14, 136, 363, 512, 794, 1130 |
| Hin6I | GCGC | 2 cut(s) | 498, 721 |
| HinP1I | GCGC | 2 cut(s) | 498, 721 |
| HindIII | AAGCTT | 1 cut(s) | 353 |
| HinfI | GANTC | 6 cut(s) | 199, 326, 584, 1036, 1101, 1241 |
| HpaII | CCGG | 1 cut(s) | 284 |
| HphI | GGTGA | 3 cut(s) | 296, 543, 1106 |
| Hpy188III | TCNNGA | 7 cut(s) | 11, 509, 581, 884, 997, 1010, 1062 |
| HpyAV | CCTTC | 7 cut(s) | 153, 561, 614, 769, 798, 913, 1191 |
| HpyCH4III | ACNGT | 5 cut(s) | 17, 782, 1003, 1198, 1208 |
| HpyCH4V | TGCA | 7 cut(s) | 428, 596, 713, 903, 955, 964, 1277 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 425, 727, 961, 1156 |
| HpyF3I | CTNAG | 6 cut(s) | 382, 411, 420, 477, 759, 1191 |
| Hsp92I | GRCGYC | 1 cut(s) | 498 |
| Hsp92II | CATG | 6 cut(s) | 14, 136, 363, 512, 794, 1130 |
| HspAI | GCGC | 2 cut(s) | 498, 721 |
| KasI | GGCGCC | 1 cut(s) | 497 |
| Kzo9I | GATC | 5 cut(s) | 181, 514, 545, 637, 939 |
| LguI | GCTCTTC | 1 cut(s) | 1114 |
| LmnI | GCTCC | 5 cut(s) | 152, 375, 1076, 1174, 1218 |
| Lsp1109I | GCAGC | 2 cut(s) | 430, 697 |
| LweI | GCATC | 2 cut(s) | 760, 890 |
| MaeI | CTAG | 1 cut(s) | 1245 |
| MaeIII | GTNAC | 1 cut(s) | 782 |
| MalI | GATC | 5 cut(s) | 183, 516, 547, 639, 941 |
| MbiI | CCGCTC | 2 cut(s) | 765, 868 |
| MboI | GATC | 5 cut(s) | 181, 514, 545, 637, 939 |
| MboII | GAAGA | 8 cut(s) | 60, 216, 540, 542, 710, 861, 1075, 1101 |
| MfeI | CAATTG | 2 cut(s) | 186, 492 |
| MflI | RGATCY | 3 cut(s) | 181, 545, 637 |
| MhlI | GDGCHC | 6 cut(s) | 83, 125, 421, 475, 656, 1215 |
| Mly113I | GGCGCC | 1 cut(s) | 498 |
| MlyI | GAGTC | 1 cut(s) | 208 |
| MmeI | TCCRAC | 1 cut(s) | 255 |
| MroXI | GAANNNNTTC | 2 cut(s) | 891, 1035 |
| MseI | TTAA | 3 cut(s) | 138, 630, 1056 |
| MslI | CAYNNNNRTG | 2 cut(s) | 15, 42 |
| MspA1I | CMGCKG | 1 cut(s) | 710 |
| MspI | CCGG | 1 cut(s) | 284 |
| MspR9I | CCNGG | 5 cut(s) | 285, 435, 897, 1098, 1140 |
| MunI | CAATTG | 2 cut(s) | 186, 492 |
| Mva1269I | GAATGC | 2 cut(s) | 596, 619 |
| MvaI | CCWGG | 4 cut(s) | 435, 897, 1098, 1140 |
| MvnI | CGCG | 2 cut(s) | 723, 998 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 425, 727, 961, 1156 |
| NarI | GGCGCC | 1 cut(s) | 498 |
| NciI | CCSGG | 1 cut(s) | 285 |
| NdeI | CATATG | 1 cut(s) | 1230 |
| NdeII | GATC | 5 cut(s) | 181, 514, 545, 637, 939 |
| NlaIII | CATG | 6 cut(s) | 14, 136, 363, 512, 794, 1130 |
| NlaIV | GGNNCC | 6 cut(s) | 183, 348, 472, 473, 474, 499 |
| NruI | TCGCGA | 1 cut(s) | 998 |
| PagI | TCATGA | 2 cut(s) | 10, 508 |
| PasI | CCCWGGG | 1 cut(s) | 434 |
| PciSI | GCTCTTC | 1 cut(s) | 1114 |
| PctI | GAATGC | 2 cut(s) | 596, 619 |
| PdmI | GAANNNNTTC | 2 cut(s) | 891, 1035 |
| PfeI | GAWTC | 5 cut(s) | 326, 584, 1036, 1101, 1241 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 365 |
| PfoI | TCCNGGA | 3 cut(s) | 283, 895, 1096 |
| PkrI | GCNGC | 3 cut(s) | 445, 712, 1283 |
| PleI | GAGTC | 1 cut(s) | 207 |
| PluTI | GGCGCC | 1 cut(s) | 501 |
| PpsI | GAGTC | 1 cut(s) | 207 |
| Psp124BI | GAGCTC | 3 cut(s) | 125, 656, 1215 |
| Psp6I | CCWGG | 4 cut(s) | 433, 895, 1096, 1138 |
| PspGI | CCWGG | 4 cut(s) | 433, 895, 1096, 1138 |
| PspN4I | GGNNCC | 6 cut(s) | 183, 348, 472, 473, 474, 499 |
| PspOMI | GGGCCC | 1 cut(s) | 471 |
| PspPI | GGNCC | 2 cut(s) | 471, 472 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1147, 1179 |
| PsuI | RGATCY | 3 cut(s) | 181, 545, 637 |
| PvuII | CAGCTG | 1 cut(s) | 710 |
| RruI | TCGCGA | 1 cut(s) | 998 |
| RseI | CAYNNNNRTG | 2 cut(s) | 15, 42 |
| SacI | GAGCTC | 3 cut(s) | 125, 656, 1215 |
| SapI | GCTCTTC | 1 cut(s) | 1114 |
| SaqAI | TTAA | 3 cut(s) | 138, 630, 1056 |
| SatI | GCNGC | 3 cut(s) | 444, 711, 1282 |
| Sau3AI | GATC | 5 cut(s) | 181, 514, 545, 637, 939 |
| Sau96I | GGNCC | 2 cut(s) | 471, 472 |
| SchI | GAGTC | 1 cut(s) | 208 |
| ScrFI | CCNGG | 5 cut(s) | 285, 435, 897, 1098, 1140 |
| SduI | GDGCHC | 6 cut(s) | 83, 125, 421, 475, 656, 1215 |
| SfaNI | GCATC | 2 cut(s) | 760, 890 |
| SfoI | GGCGCC | 1 cut(s) | 499 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 15, 42 |
| SsiI | CCGC | 4 cut(s) | 723, 765, 868, 1282 |
| SspDI | GGCGCC | 1 cut(s) | 497 |
| SspMI | CTAG | 1 cut(s) | 1245 |
| SstI | GAGCTC | 3 cut(s) | 125, 656, 1215 |
| StyD4I | CCNGG | 5 cut(s) | 283, 433, 895, 1096, 1138 |
| StyI | CCWWGG | 1 cut(s) | 1216 |
| TaaI | ACNGT | 5 cut(s) | 17, 782, 1003, 1198, 1208 |
| TaqI | TCGA | 2 cut(s) | 339, 1023 |
| TauI | GCSGC | 1 cut(s) | 1284 |
| TfiI | GAWTC | 5 cut(s) | 326, 584, 1036, 1101, 1241 |
| Tru1I | TTAA | 3 cut(s) | 138, 630, 1056 |
| Tru9I | TTAA | 3 cut(s) | 138, 630, 1056 |
| TscAI | CASTG | 5 cut(s) | 22, 96, 562, 1078, 1213 |
| TseI | GCWGC | 2 cut(s) | 443, 710 |
| TspDTI | ATGAA | 3 cut(s) | 183, 779, 1004 |
| TspGWI | ACGGA | 1 cut(s) | 1048 |
| TspRI | CASTG | 5 cut(s) | 22, 96, 562, 1078, 1213 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 365 |
| XapI | RAATTY | 3 cut(s) | 245, 522, 715 |
| XmnI | GAANNNNTTC | 2 cut(s) | 891, 1035 |
| XspI | CTAG | 1 cut(s) | 1245 |