Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008346

Physical Location & Seq

Genomic Coordinates Reverse (-)

3740691 .. 3742758

Gene Structure 2068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g06130.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGGAGGTCATCACAGTGAGGATGTAGGGTTTCAGCATAGAAATGATGGGAGCCTAAACTGTCCATCGTCCGGGATGAACACGAATCCGCTGCCCGAAAAGGTTTCGAGAATGGCGATGAGTTCTGTGTCCATGTTTAAGCCGTCAAATGGGGCTGACCCTTTCTTTGGTTCTGCTTGGGATCCAATTGTTTCATTGAGCCAGAGTGATAATTTTGGCAGTTCTACGGGTGTTTCCCACGGCGAATTTCCCAATCCACCTTACCCCTTTGCGATGGAGAATCAGGGAATGAGTAGCACCTCCCACCTTGTTCAATATCCATCTGATTCAAGCTATGCTGGGATGGTGCCAAAGCTTCCTCCATGTTTTGGAAGTGGGAGCTTCACAGAAATGGTTGGTTCTTTTGGTGTCTCTGAGTGTGGCCAGATTGCTAACCCTGGGTGTCCTCCGAACTATAACCGGAACAGGGAGGGGGGCACTTTAACAATCGGTGCCCAATCGCACGATGATCGCCAAATTTCTGAAGAGAGTGCTTTAGGATCTTCGCCGAATGGAAAGAGAAGGAAACGAGTTCCCGAATCCAACTCTGCATTCAGTCCAAATAAGAATGTTGATGGGGAACTTAACAAGGATATGTCTGGGGAGAGCTCTGATTATCTGAAAGAACAAGATGAGAAGAAACAGATGGGCAGACAGGCTAAAGAAAATTCTCAAAGCGGAGATCCAAAAGACAGTTACATTCATGTAAGAAGAGAAAAGATTAGCGAGCGGATGAGATTGCTTCAAGAACTTGTTCCAGGATGCAATAAGATTACTGGGAAGGCTGTAATGCTTGATGAGATCATCAATTATGTGCAGTCTCTGCAACAGCAAGTTGAGTTTTTATCAATGAAACTTGCGACGGTGAATCCAGAACTCAACATTGATATTGAACGGATTCTATCCAAAGACATTCTTAATTCACGGAGTGGCGGTGGAGCTAACTTCGGGTTTAGTCCTGGAATCGGCTCTCCTCACCCGTACCCTCCCGGTATGTTCCATGGAAACTTGCCAAGTTTGCTAACTTCAGCTCCACAATTTCCTTCCTTGCCTCAGAATGTATTAGACAATGAGCTCCAGGGTCTTTTCCATATGGGTTTTGATTCTAGTTCAGCTATTGACAATATGGGACAAAATGGCCGCTTGAAACCAGAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

400

Amino Acids

43.23

Weight (kDa)

5.51

Isoelectric Point (pI)

60.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10100 AT1G10120 AT1G10120
fragaria_vesca	FvH4_2g32580
malus_domestica	MD08G1077000.v1.1 MD15G1064500.v1.1
prunus_persica	Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1
pyrus_communis	pycom08g06400 pycom15g06130
rosa_chinensis	RchiOBHm_Chr6g0310101
rosa_laevigata	RLG00000010511
rosa_multiflora	Rmu_sc0000294.1_g000024
rosa_roxburghii	Rroxscaffold_7G00158870
rosa_rugosa	Rorug06G0377300 Rorug06G0377400
rosa_samantha	Rh6AG491400 Rh6BG500700 Rh6CG505800 Rh6DG491700
rosa_wichuraiana	Rw6G042750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	346, 491
AccB7I	CCANNNNNTGG	1 cut(s)	368
AccBSI	CCGCTC	1 cut(s)	769
AciI	CCGC	5 cut(s)	89, 717, 769, 972, 1180
AclWI	GGATC	4 cut(s)	176, 189, 547, 716
AcoI	YGGCCR	2 cut(s)	421, 1177
AcsI	RAATTY	3 cut(s)	245, 516, 706
AcuI	CTGAAG	2 cut(s)	543, 1050
AdeI	CACNNNGTG	1 cut(s)	968
AfaI	GTAC	1 cut(s)	1022
AfiI	CCNNNNNNNGG	6 cut(s)	71, 149, 167, 368, 466, 1004
AgsI	TTSAA	5 cut(s)	314, 330, 785, 932, 1186
AjnI	CCWGG	4 cut(s)	436, 796, 997, 1116
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	9 cut(s)	333, 355, 381, 648, 980, 1070, 1114, 1154, 1195
AluI	AGCT	9 cut(s)	333, 355, 381, 648, 980, 1070, 1114, 1154, 1195
Alw21I	GWGCWC	2 cut(s)	650, 1116
Alw26I	GTCTC	2 cut(s)	415, 864
AlwI	GGATC	4 cut(s)	176, 189, 547, 716
AlwNI	CAGNNNCTG	1 cut(s)	862
AoxI	GGCC	2 cut(s)	421, 1177
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	3 cut(s)	245, 516, 706
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Asp700I	GAANNNNTTC	2 cut(s)	792, 936
AsuC2I	CCSGG	2 cut(s)	73, 1029
AsuHPI	GGTGA	2 cut(s)	916, 1007
BaeGI	GKGCMC	2 cut(s)	479, 496
BalI	TGGCCA	1 cut(s)	423
BamHI	GGATCC	1 cut(s)	181
BanI	GGYRCC	2 cut(s)	346, 491
BanII	GRGCYC	2 cut(s)	650, 1116
Bbv12I	GWGCWC	2 cut(s)	650, 1116
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	7 cut(s)	41, 73, 268, 328, 337, 608, 679
BceAI	ACGGC	2 cut(s)	127, 256
BcgI	CGANNNNNNTGC	4 cut(s)	73, 107, 491, 525
BciT130I	CCWGG	4 cut(s)	438, 798, 999, 1118
BcnI	CCSGG	2 cut(s)	73, 1029
BcoDI	GTCTC	2 cut(s)	415, 864
BfaI	CTAG	1 cut(s)	1146
BisI	GCNGC	2 cut(s)	92, 1180
BlsI	GCNGC	2 cut(s)	93, 1181
Bme1390I	CCNGG	6 cut(s)	73, 438, 798, 999, 1029, 1118
BmiI	GGNNCC	4 cut(s)	53, 183, 348, 493
BmrFI	CCNGG	6 cut(s)	73, 438, 798, 999, 1029, 1118
BmrI	ACTGGG	1 cut(s)	825
BmsI	GCATC	1 cut(s)	791
BmuI	ACTGGG	1 cut(s)	825
BpmI	CTGGAG	1 cut(s)	1100
BpuMI	CCSGG	2 cut(s)	73, 1029
BsaJI	CCNNGG	5 cut(s)	238, 436, 437, 1039, 1117
BsaWI	WCCGGW	1 cut(s)	459
BsaXI	ACNNNNNCTCC	4 cut(s)	958, 988, 1054, 1084
Bsc4I	CCNNNNNNNGG	6 cut(s)	71, 149, 167, 368, 466, 1004
Bse1I	ACTGG	1 cut(s)	820
BseBI	CCWGG	4 cut(s)	438, 798, 999, 1118
BseDI	CCNNGG	5 cut(s)	238, 436, 437, 1039, 1117
BseGI	GGATG	5 cut(s)	28, 81, 348, 777, 806
BseLI	CCNNNNNNNGG	6 cut(s)	71, 149, 167, 368, 466, 1004
BseMII	CTCAG	2 cut(s)	405, 1106
BseNI	ACTGG	1 cut(s)	820
BseRI	GAGGAG	1 cut(s)	1002
BseSI	GKGCMC	2 cut(s)	479, 496
BseXI	GCAGC	1 cut(s)	78
BseYI	CCCAGC	1 cut(s)	338
BsgI	GTGCAG	1 cut(s)	875
BshFI	GGCC	2 cut(s)	423, 1179
BshNI	GGYRCC	2 cut(s)	346, 491
BsiHKAI	GWGCWC	2 cut(s)	650, 1116
BsiSI	CCGG	3 cut(s)	72, 460, 1029
BslFI	GGGAC	1 cut(s)	1182
BslI	CCNNNNNNNGG	6 cut(s)	71, 149, 167, 368, 466, 1004
BsmAI	GTCTC	2 cut(s)	415, 864
BsmFI	GGGAC	1 cut(s)	1182
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	2 cut(s)	423, 1179
Bsp1286I	GDGCHC	4 cut(s)	479, 496, 650, 1116
Bsp143I	GATC	5 cut(s)	181, 508, 539, 721, 840
Bsp19I	CCATGG	1 cut(s)	1039
BspACI	CCGC	5 cut(s)	89, 717, 769, 972, 1180
BspANI	GGCC	2 cut(s)	423, 1179
BspCNI	CTCAG	2 cut(s)	406, 1105
BspLI	GGNNCC	4 cut(s)	53, 183, 348, 493
BspPI	GGATC	4 cut(s)	176, 189, 547, 716
BspT107I	GGYRCC	2 cut(s)	346, 491
BsrBI	CCGCTC	1 cut(s)	769
BsrI	ACTGG	1 cut(s)	820
BssECI	CCNNGG	5 cut(s)	238, 436, 437, 1039, 1117
BssMI	GATC	5 cut(s)	181, 508, 539, 721, 840
BssT1I	CCWWGG	1 cut(s)	1039
Bst2UI	CCWGG	4 cut(s)	438, 798, 999, 1118
Bst4CI	ACNGT	4 cut(s)	17, 62, 734, 904
Bst6I	CTCTTC	2 cut(s)	519, 745
BstAPI	GCANNNNNTGC	1 cut(s)	862
BstC8I	GCNNGC	1 cut(s)	767
BstDEI	CTNAG	2 cut(s)	414, 1092
BstDSI	CCRYGG	2 cut(s)	238, 1039
BstF5I	GGATG	5 cut(s)	28, 81, 348, 777, 806
BstKTI	GATC	5 cut(s)	184, 511, 542, 724, 843
BstMAI	GTCTC	2 cut(s)	415, 864
BstMBI	GATC	5 cut(s)	181, 508, 539, 721, 840
BstMWI	GCNNNNNNNGC	2 cut(s)	862, 1057
BstNI	CCWGG	4 cut(s)	438, 798, 999, 1118
BstSCI	CCNGG	6 cut(s)	71, 436, 796, 997, 1027, 1116
BstSLI	GKGCMC	2 cut(s)	479, 496
BstV1I	GCAGC	1 cut(s)	78
BstX2I	RGATCY	3 cut(s)	181, 539, 721
BstYI	RGATCY	3 cut(s)	181, 539, 721
BsuRI	GGCC	2 cut(s)	423, 1179
BtgI	CCRYGG	2 cut(s)	238, 1039
BtgZI	GCGATG	2 cut(s)	131, 287
BtsCI	GGATG	5 cut(s)	28, 81, 348, 777, 806
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	767
CaiI	CAGNNNCTG	1 cut(s)	862
Csp6I	GTAC	1 cut(s)	1021
CviAII	CATG	4 cut(s)	133, 363, 743, 1040
CviQI	GTAC	1 cut(s)	1021
DdeI	CTNAG	2 cut(s)	414, 1092
DpnI	GATC	5 cut(s)	183, 510, 541, 723, 842
DpnII	GATC	5 cut(s)	181, 508, 539, 721, 840
DraIII	CACNNNGTG	1 cut(s)	968
EaeI	YGGCCR	2 cut(s)	421, 1177
Eam1104I	CTCTTC	2 cut(s)	519, 745
EarI	CTCTTC	2 cut(s)	519, 745
Ecl136II	GAGCTC	2 cut(s)	648, 1114
Eco130I	CCWWGG	1 cut(s)	1039
Eco24I	GRGCYC	2 cut(s)	650, 1116
Eco53kI	GAGCTC	2 cut(s)	648, 1114
Eco57I	CTGAAG	2 cut(s)	543, 1050
EcoICRI	GAGCTC	2 cut(s)	648, 1114
EcoRII	CCWGG	4 cut(s)	436, 796, 997, 1116
EcoT14I	CCWWGG	1 cut(s)	1039
EcoT38I	GRGCYC	2 cut(s)	650, 1116
ErhI	CCWWGG	1 cut(s)	1039
FaeI	CATG	4 cut(s)	136, 366, 746, 1043
FalI	AAGNNNNNCTT	2 cut(s)	939, 971
FaqI	GGGAC	1 cut(s)	1182
FatI	CATG	4 cut(s)	132, 362, 742, 1039
FauNDI	CATATG	1 cut(s)	1131
Fnu4HI	GCNGC	2 cut(s)	92, 1180
FokI	GGATG	5 cut(s)	35, 88, 355, 784, 813
FriOI	GRGCYC	2 cut(s)	650, 1116
Fsp4HI	GCNGC	2 cut(s)	92, 1180
FspBI	CTAG	1 cut(s)	1146
GluI	GCNGC	2 cut(s)	92, 1180
GsaI	CCCAGC	1 cut(s)	342
GsuI	CTGGAG	1 cut(s)	1100
HaeIII	GGCC	2 cut(s)	423, 1179
HapII	CCGG	3 cut(s)	72, 460, 1029
Hin1II	CATG	4 cut(s)	136, 366, 746, 1043
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	8 cut(s)	85, 280, 326, 578, 907, 937, 1002, 1142
HpaII	CCGG	3 cut(s)	72, 460, 1029
HphI	GGTGA	2 cut(s)	916, 1007
Hpy188I	TCNGA	7 cut(s)	325, 415, 450, 523, 652, 660, 1095
Hpy188III	TCNNGA	4 cut(s)	108, 575, 785, 911
Hpy99I	CGWCG	1 cut(s)	904
HpyAV	CCTTC	3 cut(s)	555, 814, 1092
HpyCH4III	ACNGT	4 cut(s)	17, 62, 734, 904
HpyCH4V	TGCA	4 cut(s)	590, 804, 856, 865
HpyF10VI	GCNNNNNNNGC	2 cut(s)	862, 1057
HpyF3I	CTNAG	2 cut(s)	414, 1092
Hsp92II	CATG	4 cut(s)	136, 366, 746, 1043
Kzo9I	GATC	5 cut(s)	181, 508, 539, 721, 840
LmnI	GCTCC	5 cut(s)	51, 378, 977, 1075, 1119
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	1 cut(s)	791
MaeI	CTAG	1 cut(s)	1146
MaeIII	GTNAC	1 cut(s)	734
MalI	GATC	5 cut(s)	183, 510, 541, 723, 842
MbiI	CCGCTC	1 cut(s)	769
MboI	GATC	5 cut(s)	181, 508, 539, 721, 840
MboII	GAAGA	4 cut(s)	534, 536, 688, 762
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	3 cut(s)	181, 539, 721
MhlI	GDGCHC	4 cut(s)	479, 496, 650, 1116
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	8 cut(s)	186, 211, 245, 516, 706, 847, 958, 1076
MluNI	TGGCCA	1 cut(s)	423
MmeI	TCCRAC	1 cut(s)	606
MnlI	CCTC	8 cut(s)	13, 310, 369, 456, 463, 1023, 1035, 1101
Mox20I	TGGCCA	1 cut(s)	423
MroXI	GAANNNNTTC	2 cut(s)	792, 936
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	4 cut(s)	138, 482, 624, 957
MslI	CAYNNNNRTG	3 cut(s)	15, 42, 389
Msp20I	TGGCCA	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	3 cut(s)	72, 460, 1029
MspR9I	CCNGG	6 cut(s)	73, 438, 798, 999, 1029, 1118
MunI	CAATTG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	590
MvaI	CCWGG	4 cut(s)	438, 798, 999, 1118
MwoI	GCNNNNNNNGC	2 cut(s)	862, 1057
NciI	CCSGG	2 cut(s)	73, 1029
NcoI	CCATGG	1 cut(s)	1039
NdeI	CATATG	1 cut(s)	1131
NdeII	GATC	5 cut(s)	181, 508, 539, 721, 840
NlaIII	CATG	4 cut(s)	136, 366, 746, 1043
NlaIV	GGNNCC	4 cut(s)	53, 183, 348, 493
PasI	CCCWGGG	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	1 cut(s)	113
PctI	GAATGC	1 cut(s)	590
PdmI	GAANNNNTTC	2 cut(s)	792, 936
PfeI	GAWTC	8 cut(s)	85, 280, 326, 578, 907, 937, 1002, 1142
PflMI	CCANNNNNTGG	1 cut(s)	368
PfoI	TCCNGGA	3 cut(s)	71, 796, 997
PkrI	GCNGC	2 cut(s)	93, 1181
Psp124BI	GAGCTC	2 cut(s)	650, 1116
Psp6I	CCWGG	4 cut(s)	436, 796, 997, 1116
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	4 cut(s)	436, 796, 997, 1116
PspN4I	GGNNCC	4 cut(s)	53, 183, 348, 493
PstNI	CAGNNNCTG	1 cut(s)	862
PsuI	RGATCY	3 cut(s)	181, 539, 721
RsaI	GTAC	1 cut(s)	1022
RsaNI	GTAC	1 cut(s)	1021
RseI	CAYNNNNRTG	3 cut(s)	15, 42, 389
SacI	GAGCTC	2 cut(s)	650, 1116
SaqAI	TTAA	4 cut(s)	138, 482, 624, 957
SatI	GCNGC	2 cut(s)	92, 1180
Sau3AI	GATC	5 cut(s)	181, 508, 539, 721, 840
ScrFI	CCNGG	6 cut(s)	73, 438, 798, 999, 1029, 1118
SduI	GDGCHC	4 cut(s)	479, 496, 650, 1116
SfaNI	GCATC	1 cut(s)	791
SmiMI	CAYNNNNRTG	3 cut(s)	15, 42, 389
Sse9I	AATT	8 cut(s)	186, 211, 245, 516, 706, 847, 958, 1076
SsiI	CCGC	5 cut(s)	89, 717, 769, 972, 1180
SspMI	CTAG	1 cut(s)	1146
SstI	GAGCTC	2 cut(s)	650, 1116
StyD4I	CCNGG	6 cut(s)	71, 436, 796, 997, 1027, 1116
StyI	CCWWGG	1 cut(s)	1039
TaaI	ACNGT	4 cut(s)	17, 62, 734, 904
TaqI	TCGA	1 cut(s)	107
TasI	AATT	8 cut(s)	186, 211, 245, 516, 706, 847, 958, 1076
TauI	GCSGC	1 cut(s)	1182
TfiI	GAWTC	8 cut(s)	85, 280, 326, 578, 907, 937, 1002, 1142
Tru1I	TTAA	4 cut(s)	138, 482, 624, 957
Tru9I	TTAA	4 cut(s)	138, 482, 624, 957
TscAI	CASTG	1 cut(s)	22
TseI	GCWGC	1 cut(s)	91
TspDTI	ATGAA	4 cut(s)	92, 183, 731, 905
TspGWI	ACGGA	2 cut(s)	949, 979
TspRI	CASTG	1 cut(s)	22
Van91I	CCANNNNNTGG	1 cut(s)	368
XapI	RAATTY	3 cut(s)	245, 516, 706
XmnI	GAANNNNTTC	2 cut(s)	792, 936
XspI	CTAG	1 cut(s)	1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.