transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G10100 AT1G10120 AT1G10120 |
| fragaria_vesca | FvH4_2g32580 |
| malus_domestica | MD08G1077000.v1.1 MD15G1064500.v1.1 |
| prunus_persica | Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 Prupe.1G418500_v2.0.a1 |
| pyrus_communis | pycom08g06400 pycom15g06130 |
| rosa_chinensis | RchiOBHm_Chr6g0310101 |
| rosa_laevigata | RLG00000010511 |
| rosa_multiflora | Rmu_sc0000294.1_g000024 |
| rosa_roxburghii | Rroxscaffold_7G00158870 |
| rosa_rugosa | Rorug06G0377300 Rorug06G0377400 |
| rosa_samantha | Rh6AG491400 Rh6BG500700 Rh6CG505800 Rh6DG491700 |
| rosa_wichuraiana | Rw6G042750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 491 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 368 |
| AccBSI | CCGCTC | 1 cut(s) | 862 |
| AccII | CGCG | 1 cut(s) | 717 |
| AciI | CCGC | 5 cut(s) | 89, 717, 759, 862, 1276 |
| AclWI | GGATC | 4 cut(s) | 176, 189, 547, 758 |
| AcoI | YGGCCR | 1 cut(s) | 421 |
| AcsI | RAATTY | 4 cut(s) | 245, 516, 748, 1169 |
| AcuI | CTGAAG | 3 cut(s) | 543, 1063, 1143 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 71, 149, 167, 368, 466, 1097 |
| AgsI | TTSAA | 6 cut(s) | 314, 330, 483, 878, 1025, 1282 |
| AjnI | CCWGG | 2 cut(s) | 804, 1090 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 575, 607 |
| Alw21I | GWGCWC | 2 cut(s) | 650, 1209 |
| Alw26I | GTCTC | 2 cut(s) | 415, 957 |
| AlwI | GGATC | 4 cut(s) | 176, 189, 547, 758 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 955 |
| Ama87I | CYCGRG | 1 cut(s) | 1054 |
| AoxI | GGCC | 3 cut(s) | 421, 802, 1273 |
| ApeKI | GCWGC | 3 cut(s) | 91, 701, 704 |
| ApoI | RAATTY | 4 cut(s) | 245, 516, 748, 1169 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 149, 181 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 885, 1029 |
| AspLEI | GCGC | 1 cut(s) | 717 |
| AspS9I | GGNCC | 1 cut(s) | 802 |
| AsuC2I | CCSGG | 3 cut(s) | 73, 891, 1122 |
| AsuHPI | GGTGA | 1 cut(s) | 1100 |
| AvaI | CYCGRG | 1 cut(s) | 1054 |
| BaeGI | GKGCMC | 2 cut(s) | 479, 496 |
| BalI | TGGCCA | 1 cut(s) | 423 |
| BamHI | GGATCC | 1 cut(s) | 181 |
| BanI | GGYRCC | 1 cut(s) | 491 |
| BanII | GRGCYC | 3 cut(s) | 650, 796, 1209 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1141, 1173 |
| BbsI | GAAGAC | 2 cut(s) | 1069, 1208 |
| Bbv12I | GWGCWC | 2 cut(s) | 650, 1209 |
| BbvI | GCAGC | 3 cut(s) | 78, 691, 713 |
| BccI | CCATC | 6 cut(s) | 73, 268, 328, 608, 721, 1125 |
| BceAI | ACGGC | 1 cut(s) | 127 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 73, 107, 491, 525 |
| BciT130I | CCWGG | 2 cut(s) | 806, 1092 |
| BclI | TGATCA | 1 cut(s) | 208 |
| BcnI | CCSGG | 3 cut(s) | 73, 891, 1122 |
| BcoDI | GTCTC | 2 cut(s) | 415, 957 |
| BfaI | CTAG | 1 cut(s) | 1239 |
| BisI | GCNGC | 4 cut(s) | 92, 702, 705, 1276 |
| BlsI | GCNGC | 4 cut(s) | 93, 703, 706, 1277 |
| Bme1390I | CCNGG | 5 cut(s) | 73, 806, 891, 1092, 1122 |
| BmeT110I | CYCGRG | 1 cut(s) | 1054 |
| BmgT120I | GGNCC | 1 cut(s) | 802 |
| BmiI | GGNNCC | 4 cut(s) | 53, 183, 493, 803 |
| BmrFI | CCNGG | 5 cut(s) | 73, 806, 891, 1092, 1122 |
| BmrI | ACTGGG | 1 cut(s) | 918 |
| BmsI | GCATC | 2 cut(s) | 336, 884 |
| BmuI | ACTGGG | 1 cut(s) | 918 |
| BpiI | GAAGAC | 2 cut(s) | 1069, 1208 |
| BpmI | CTGGAG | 1 cut(s) | 1149 |
| BpuMI | CCSGG | 3 cut(s) | 73, 891, 1122 |
| BsaJI | CCNNGG | 2 cut(s) | 1132, 1210 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1051, 1081, 1147, 1177 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 71, 149, 167, 368, 466, 1097 |
| Bse1I | ACTGG | 1 cut(s) | 913 |
| Bse3DI | GCAATG | 1 cut(s) | 267 |
| BseBI | CCWGG | 2 cut(s) | 806, 1092 |
| BseDI | CCNNGG | 2 cut(s) | 1132, 1210 |
| BseGI | GGATG | 6 cut(s) | 28, 81, 348, 870, 899, 1117 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 71, 149, 167, 368, 466, 1097 |
| BseMI | GCAATG | 1 cut(s) | 267 |
| BseMII | CTCAG | 3 cut(s) | 194, 405, 1199 |
| BseNI | ACTGG | 1 cut(s) | 913 |
| BseRI | GAGGAG | 2 cut(s) | 1072, 1095 |
| BseSI | GKGCMC | 2 cut(s) | 479, 496 |
| BseXI | GCAGC | 3 cut(s) | 78, 691, 713 |
| BseYI | CCCAGC | 1 cut(s) | 338 |
| BsgI | GTGCAG | 1 cut(s) | 968 |
| Bsh1236I | CGCG | 1 cut(s) | 717 |
| Bsh1285I | CGRYCG | 1 cut(s) | 996 |
| BshFI | GGCC | 3 cut(s) | 423, 804, 1275 |
| BshNI | GGYRCC | 1 cut(s) | 491 |
| BsiEI | CGRYCG | 1 cut(s) | 996 |
| BsiHKAI | GWGCWC | 2 cut(s) | 650, 1209 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1054 |
| BsiSI | CCGG | 3 cut(s) | 72, 890, 1122 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 71, 149, 167, 368, 466, 1097 |
| BsmAI | GTCTC | 2 cut(s) | 415, 957 |
| BsmI | GAATGC | 2 cut(s) | 590, 613 |
| BsnI | GGCC | 3 cut(s) | 423, 804, 1275 |
| BsoBI | CYCGRG | 1 cut(s) | 1054 |
| Bsp1286I | GDGCHC | 5 cut(s) | 479, 496, 650, 796, 1209 |
| Bsp143I | GATC | 7 cut(s) | 181, 208, 508, 539, 763, 869, 933 |
| Bsp19I | CCATGG | 1 cut(s) | 1132 |
| BspACI | CCGC | 5 cut(s) | 89, 717, 759, 862, 1276 |
| BspANI | GGCC | 3 cut(s) | 423, 804, 1275 |
| BspCNI | CTCAG | 3 cut(s) | 195, 406, 1198 |
| BspFNI | CGCG | 1 cut(s) | 717 |
| BspHI | TCATGA | 1 cut(s) | 10 |
| BspLI | GGNNCC | 4 cut(s) | 53, 183, 493, 803 |
| BspPI | GGATC | 4 cut(s) | 176, 189, 547, 758 |
| BspT107I | GGYRCC | 1 cut(s) | 491 |
| BsrBI | CCGCTC | 1 cut(s) | 862 |
| BsrDI | GCAATG | 1 cut(s) | 267 |
| BsrI | ACTGG | 1 cut(s) | 913 |
| BssECI | CCNNGG | 2 cut(s) | 1132, 1210 |
| BssMI | GATC | 7 cut(s) | 181, 208, 508, 539, 763, 869, 933 |
| BssT1I | CCWWGG | 2 cut(s) | 1132, 1210 |
| Bst2UI | CCWGG | 2 cut(s) | 806, 1092 |
| Bst4CI | ACNGT | 3 cut(s) | 17, 776, 997 |
| Bst6I | CTCTTC | 2 cut(s) | 519, 838 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 955, 1268 |
| BstC8I | GCNNGC | 2 cut(s) | 860, 1273 |
| BstDEI | CTNAG | 3 cut(s) | 203, 414, 1185 |
| BstDSI | CCRYGG | 1 cut(s) | 1132 |
| BstF5I | GGATG | 6 cut(s) | 28, 81, 348, 870, 899, 1117 |
| BstFNI | CGCG | 1 cut(s) | 717 |
| BstHHI | GCGC | 1 cut(s) | 717 |
| BstKTI | GATC | 7 cut(s) | 184, 211, 511, 542, 766, 872, 936 |
| BstMAI | GTCTC | 2 cut(s) | 415, 957 |
| BstMBI | GATC | 7 cut(s) | 181, 208, 508, 539, 763, 869, 933 |
| BstMCI | CGRYCG | 1 cut(s) | 996 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 721, 955, 1150, 1268 |
| BstNI | CCWGG | 2 cut(s) | 806, 1092 |
| BstSCI | CCNGG | 5 cut(s) | 71, 804, 889, 1090, 1120 |
| BstSLI | GKGCMC | 2 cut(s) | 479, 496 |
| BstUI | CGCG | 1 cut(s) | 717 |
| BstV1I | GCAGC | 3 cut(s) | 78, 691, 713 |
| BstV2I | GAAGAC | 2 cut(s) | 1069, 1208 |
| BstX2I | RGATCY | 3 cut(s) | 181, 539, 763 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 274 |
| BstYI | RGATCY | 3 cut(s) | 181, 539, 763 |
| BsuRI | GGCC | 3 cut(s) | 423, 804, 1275 |
| BtgI | CCRYGG | 1 cut(s) | 1132 |
| BtgZI | GCGATG | 2 cut(s) | 131, 287 |
| BtsCI | GGATG | 6 cut(s) | 28, 81, 348, 870, 899, 1117 |
| BtsIMutI | CAGTG | 1 cut(s) | 22 |
| Cac8I | GCNNGC | 2 cut(s) | 860, 1273 |
| CaiI | CAGNNNCTG | 1 cut(s) | 955 |
| CciI | TCATGA | 1 cut(s) | 10 |
| CfoI | GCGC | 1 cut(s) | 717 |
| Cfr13I | GGNCC | 1 cut(s) | 802 |
| CviAII | CATG | 5 cut(s) | 11, 133, 363, 785, 1133 |
| DdeI | CTNAG | 3 cut(s) | 203, 414, 1185 |
| DpnI | GATC | 7 cut(s) | 183, 210, 510, 541, 765, 871, 935 |
| DpnII | GATC | 7 cut(s) | 181, 208, 508, 539, 763, 869, 933 |
| EaeI | YGGCCR | 1 cut(s) | 421 |
| Eam1104I | CTCTTC | 2 cut(s) | 519, 838 |
| EarI | CTCTTC | 2 cut(s) | 519, 838 |
| Ecl136II | GAGCTC | 2 cut(s) | 648, 1207 |
| Eco130I | CCWWGG | 2 cut(s) | 1132, 1210 |
| Eco24I | GRGCYC | 3 cut(s) | 650, 796, 1209 |
| Eco53kI | GAGCTC | 2 cut(s) | 648, 1207 |
| Eco57I | CTGAAG | 3 cut(s) | 543, 1063, 1143 |
| Eco88I | CYCGRG | 1 cut(s) | 1054 |
| EcoICRI | GAGCTC | 2 cut(s) | 648, 1207 |
| EcoRII | CCWGG | 2 cut(s) | 804, 1090 |
| EcoT14I | CCWWGG | 2 cut(s) | 1132, 1210 |
| EcoT38I | GRGCYC | 3 cut(s) | 650, 796, 1209 |
| ErhI | CCWWGG | 2 cut(s) | 1132, 1210 |
| FaeI | CATG | 5 cut(s) | 14, 136, 366, 788, 1136 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1032, 1064 |
| FatI | CATG | 5 cut(s) | 10, 132, 362, 784, 1132 |
| FauNDI | CATATG | 1 cut(s) | 1224 |
| FbaI | TGATCA | 1 cut(s) | 208 |
| Fnu4HI | GCNGC | 4 cut(s) | 92, 702, 705, 1276 |
| FokI | GGATG | 6 cut(s) | 35, 88, 355, 877, 906, 1104 |
| FriOI | GRGCYC | 3 cut(s) | 650, 796, 1209 |
| Fsp4HI | GCNGC | 4 cut(s) | 92, 702, 705, 1276 |
| FspBI | CTAG | 1 cut(s) | 1239 |
| GlaI | GCGC | 1 cut(s) | 716 |
| GluI | GCNGC | 4 cut(s) | 92, 702, 705, 1276 |
| GsaI | CCCAGC | 1 cut(s) | 342 |
| GsuI | CTGGAG | 1 cut(s) | 1149 |
| HaeIII | GGCC | 3 cut(s) | 423, 804, 1275 |
| HapII | CCGG | 3 cut(s) | 72, 890, 1122 |
| HhaI | GCGC | 1 cut(s) | 717 |
| Hin1II | CATG | 5 cut(s) | 14, 136, 366, 788, 1136 |
| Hin6I | GCGC | 1 cut(s) | 715 |
| HinP1I | GCGC | 1 cut(s) | 715 |
| HindIII | AAGCTT | 1 cut(s) | 353 |
| HinfI | GANTC | 9 cut(s) | 85, 199, 280, 326, 578, 1000, 1030, 1095, 1235 |
| HpaII | CCGG | 3 cut(s) | 72, 890, 1122 |
| HphI | GGTGA | 1 cut(s) | 1100 |
| Hpy188I | TCNGA | 8 cut(s) | 204, 325, 415, 450, 523, 652, 660, 1188 |
| Hpy188III | TCNNGA | 6 cut(s) | 11, 108, 575, 878, 1004, 1166 |
| HpyAV | CCTTC | 4 cut(s) | 555, 792, 907, 1185 |
| HpyCH4III | ACNGT | 3 cut(s) | 17, 776, 997 |
| HpyCH4V | TGCA | 6 cut(s) | 590, 707, 897, 949, 958, 1271 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 721, 955, 1150, 1268 |
| HpyF3I | CTNAG | 3 cut(s) | 203, 414, 1185 |
| Hsp92II | CATG | 5 cut(s) | 14, 136, 366, 788, 1136 |
| HspAI | GCGC | 1 cut(s) | 715 |
| Ksp22I | TGATCA | 1 cut(s) | 208 |
| Kzo9I | GATC | 7 cut(s) | 181, 208, 508, 539, 763, 869, 933 |
| LmnI | GCTCC | 5 cut(s) | 51, 378, 1070, 1168, 1212 |
| Lsp1109I | GCAGC | 3 cut(s) | 78, 691, 713 |
| LweI | GCATC | 2 cut(s) | 336, 884 |
| MaeI | CTAG | 1 cut(s) | 1239 |
| MaeIII | GTNAC | 1 cut(s) | 776 |
| MalI | GATC | 7 cut(s) | 183, 210, 510, 541, 765, 871, 935 |
| MbiI | CCGCTC | 1 cut(s) | 862 |
| MboI | GATC | 7 cut(s) | 181, 208, 508, 539, 763, 869, 933 |
| MboII | GAAGA | 7 cut(s) | 60, 534, 536, 688, 855, 1069, 1208 |
| MfeI | CAATTG | 1 cut(s) | 186 |
| MflI | RGATCY | 3 cut(s) | 181, 539, 763 |
| MhlI | GDGCHC | 5 cut(s) | 479, 496, 650, 796, 1209 |
| MlsI | TGGCCA | 1 cut(s) | 423 |
| MluCI | AATT | 6 cut(s) | 186, 245, 516, 748, 940, 1169 |
| MluNI | TGGCCA | 1 cut(s) | 423 |
| MlyI | GAGTC | 1 cut(s) | 208 |
| MmeI | TCCRAC | 1 cut(s) | 606 |
| MnlI | CCTC | 9 cut(s) | 13, 310, 369, 456, 463, 836, 1050, 1116, 1194 |
| Mox20I | TGGCCA | 1 cut(s) | 423 |
| MroXI | GAANNNNTTC | 2 cut(s) | 885, 1029 |
| MscI | TGGCCA | 1 cut(s) | 423 |
| MseI | TTAA | 4 cut(s) | 138, 624, 1011, 1050 |
| MslI | CAYNNNNRTG | 3 cut(s) | 15, 272, 389 |
| Msp20I | TGGCCA | 1 cut(s) | 423 |
| MspA1I | CMGCKG | 2 cut(s) | 91, 704 |
| MspI | CCGG | 3 cut(s) | 72, 890, 1122 |
| MspR9I | CCNGG | 5 cut(s) | 73, 806, 891, 1092, 1122 |
| MunI | CAATTG | 1 cut(s) | 186 |
| Mva1269I | GAATGC | 2 cut(s) | 590, 613 |
| MvaI | CCWGG | 2 cut(s) | 806, 1092 |
| MvnI | CGCG | 1 cut(s) | 717 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 721, 955, 1150, 1268 |
| NciI | CCSGG | 3 cut(s) | 73, 891, 1122 |
| NcoI | CCATGG | 1 cut(s) | 1132 |
| NdeI | CATATG | 1 cut(s) | 1224 |
| NdeII | GATC | 7 cut(s) | 181, 208, 508, 539, 763, 869, 933 |
| NlaIII | CATG | 5 cut(s) | 14, 136, 366, 788, 1136 |
| NlaIV | GGNNCC | 4 cut(s) | 53, 183, 493, 803 |
| PaeR7I | CTCGAG | 1 cut(s) | 1054 |
| PagI | TCATGA | 1 cut(s) | 10 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 113 |
| PctI | GAATGC | 2 cut(s) | 590, 613 |
| PdmI | GAANNNNTTC | 2 cut(s) | 885, 1029 |
| PfeI | GAWTC | 8 cut(s) | 85, 280, 326, 578, 1000, 1030, 1095, 1235 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 368 |
| PfoI | TCCNGGA | 3 cut(s) | 71, 889, 1090 |
| PkrI | GCNGC | 4 cut(s) | 93, 703, 706, 1277 |
| PleI | GAGTC | 1 cut(s) | 207 |
| PpsI | GAGTC | 1 cut(s) | 207 |
| Psp124BI | GAGCTC | 2 cut(s) | 650, 1209 |
| Psp6I | CCWGG | 2 cut(s) | 804, 1090 |
| PspFI | CCCAGC | 1 cut(s) | 338 |
| PspGI | CCWGG | 2 cut(s) | 804, 1090 |
| PspN4I | GGNNCC | 4 cut(s) | 53, 183, 493, 803 |
| PspPI | GGNCC | 1 cut(s) | 802 |
| PspXI | VCTCGAGB | 1 cut(s) | 1054 |
| PstNI | CAGNNNCTG | 1 cut(s) | 955 |
| PsuI | RGATCY | 3 cut(s) | 181, 539, 763 |
| PvuII | CAGCTG | 1 cut(s) | 704 |
| RseI | CAYNNNNRTG | 3 cut(s) | 15, 272, 389 |
| SacI | GAGCTC | 2 cut(s) | 650, 1209 |
| SaqAI | TTAA | 4 cut(s) | 138, 624, 1011, 1050 |
| SatI | GCNGC | 4 cut(s) | 92, 702, 705, 1276 |
| Sau3AI | GATC | 7 cut(s) | 181, 208, 508, 539, 763, 869, 933 |
| Sau96I | GGNCC | 1 cut(s) | 802 |
| SchI | GAGTC | 1 cut(s) | 208 |
| ScrFI | CCNGG | 5 cut(s) | 73, 806, 891, 1092, 1122 |
| SduI | GDGCHC | 5 cut(s) | 479, 496, 650, 796, 1209 |
| SfaNI | GCATC | 2 cut(s) | 336, 884 |
| Sfr274I | CTCGAG | 1 cut(s) | 1054 |
| SlaI | CTCGAG | 1 cut(s) | 1054 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 15, 272, 389 |
| SmlI | CTYRAG | 1 cut(s) | 1054 |
| SmoI | CTYRAG | 1 cut(s) | 1054 |
| Sse9I | AATT | 6 cut(s) | 186, 245, 516, 748, 940, 1169 |
| SsiI | CCGC | 5 cut(s) | 89, 717, 759, 862, 1276 |
| SspMI | CTAG | 1 cut(s) | 1239 |
| SstI | GAGCTC | 2 cut(s) | 650, 1209 |
| StyD4I | CCNGG | 5 cut(s) | 71, 804, 889, 1090, 1120 |
| StyI | CCWWGG | 2 cut(s) | 1132, 1210 |
| TaaI | ACNGT | 3 cut(s) | 17, 776, 997 |
| TaqI | TCGA | 2 cut(s) | 107, 1055 |
| TasI | AATT | 6 cut(s) | 186, 245, 516, 748, 940, 1169 |
| TauI | GCSGC | 1 cut(s) | 1278 |
| TfiI | GAWTC | 8 cut(s) | 85, 280, 326, 578, 1000, 1030, 1095, 1235 |
| Tru1I | TTAA | 4 cut(s) | 138, 624, 1011, 1050 |
| Tru9I | TTAA | 4 cut(s) | 138, 624, 1011, 1050 |
| TscAI | CASTG | 1 cut(s) | 22 |
| TseI | GCWGC | 3 cut(s) | 91, 701, 704 |
| TspDTI | ATGAA | 4 cut(s) | 92, 183, 773, 998 |
| TspGWI | ACGGA | 1 cut(s) | 1042 |
| TspRI | CASTG | 1 cut(s) | 22 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 368 |
| XapI | RAATTY | 4 cut(s) | 245, 516, 748, 1169 |
| XhoI | CTCGAG | 1 cut(s) | 1054 |
| XmnI | GAANNNNTTC | 2 cut(s) | 885, 1029 |
| XspI | CTAG | 1 cut(s) | 1239 |