MD15G1064500.v1.1

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
4480460 .. 4483553
3094 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1064500.v1.1.491

Sequence Viewer

Length: 1296 bp
ATGGGAGGTCATGACAGTGAGGATGTAGGGTTTCAGCATAGAAATAATGGGAGCCTGAACTATCCATCTTCCGGGATGAACACGAATCCGCTGCCCGAAAAGGTTTCGAGAATGGCGATGAGTTCTGTGTCCATGTTTAAGCCGTCAAATGGGGCTGACCCTTTCTTTGGTTCTGGTTGGGATCCAATTGTTTCATTGAGTCTGAGTGATCATTTTGGCAGTTCTACGGGTATTTCCCACAGCGAATTTCCCAATCCACCTTACCCCATTGCGATGGAGAATCAGGGAATGAGTAGCACCTCCCACCTTGTTCAATATCCATCTGATTCAAGCTATGCTGGGATGATGCCAAAGCTTCCTCCATGTTTTGGAAGTGGGAGCTTCACAGAAATGGTTGGTTCTTTTGGTGTCTCTGAGTGTGGCCAGATTGCTAACTCTGGGTGTCCTCCGAACTATAACCCGAACAGGGAGGGGGGCACTTCAACAATCGGTGCCCAATCGCACGATGATCGCCAAATTTCTGAAGAGAGTGCTTTAGGATCTTCGCCGAATGGAAAGAGAAGGAAACGAGTTCCCGAATCCAACTCTGCATTCAGTCCAAATAAGAATGCTGATGGGGAACTTAACAAGGATATGTCTGGGGAGAGCTCTGATTATCTGAAAGAACAAGATGAGAAGAAAGCAAAAACTGACGAAAACGCAGCTGCAAATCTGCGCGGTAAGCAGATGGGCAAACAGACTAAAGAAAATTCTCAAAGCGGAGATCCAAAAGACAGTTACATTCATGTTAGAGCCCGAAGGGGCCAGGCTACGAATAGTCATAGCCTCGCAGAAAGGGTAAGAAGAGAAAAGATTAGCGAGCGGATGAGATCGCTTCAAGAACTTGTTCCGGGATGCAATAAGATTACTGGGAAGGCTGTAATGCTTGATGAGATCATCAATTATGTGCAGTCTCTGCAACAGCAAGTTGAGTTTTTATCAATGAAACTTGCGACCGTGAATCCAGAACTTAACATTGATATTGAACGGATTCTATCCAAAGACATTCTTAACTCGAGGAGTGGTGGTGGAGCTGTCTTCAGGTTTAGTCCTGGAATCGGCTCTCCTCACCCATACCATCCCGGTATGTTCCATGGAAACTTGCCAAGTATGCTAACTTCAGCTCCAGAATTTCCTTCCTTGCCTCAGAATGTATTAGACAACGAGCTCCAAGGTCTTCTCCATATGGGTTTTGATTCTAGTTCAGCTATTGACAATATGGCACAAAATGCAGGCCGCTTGAAACCAGAGCTATAA

Protein Analysis

432

Amino Acids

46.68

Weight (kDa)

5.97

Isoelectric Point (pI)

58.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 272 - 320 3.8e-07 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 278 - 323 3.3e-06 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 491
AccB7I CCANNNNNTGG 1 cut(s) 368
AccBSI CCGCTC 1 cut(s) 862
AccII CGCG 1 cut(s) 717
AciI CCGC 5 cut(s) 89, 717, 759, 862, 1276
AclWI GGATC 4 cut(s) 176, 189, 547, 758
AcoI YGGCCR 1 cut(s) 421
AcsI RAATTY 4 cut(s) 245, 516, 748, 1169
AcuI CTGAAG 3 cut(s) 543, 1063, 1143
AfiI CCNNNNNNNGG 6 cut(s) 71, 149, 167, 368, 466, 1097
AgsI TTSAA 6 cut(s) 314, 330, 483, 878, 1025, 1282
AjnI CCWGG 2 cut(s) 804, 1090
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
Alw21I GWGCWC 2 cut(s) 650, 1209
Alw26I GTCTC 2 cut(s) 415, 957
AlwI GGATC 4 cut(s) 176, 189, 547, 758
AlwNI CAGNNNCTG 1 cut(s) 955
Ama87I CYCGRG 1 cut(s) 1054
AoxI GGCC 3 cut(s) 421, 802, 1273
ApeKI GCWGC 3 cut(s) 91, 701, 704
ApoI RAATTY 4 cut(s) 245, 516, 748, 1169
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
Asp700I GAANNNNTTC 2 cut(s) 885, 1029
AspLEI GCGC 1 cut(s) 717
AspS9I GGNCC 1 cut(s) 802
AsuC2I CCSGG 3 cut(s) 73, 891, 1122
AsuHPI GGTGA 1 cut(s) 1100
AvaI CYCGRG 1 cut(s) 1054
BaeGI GKGCMC 2 cut(s) 479, 496
BalI TGGCCA 1 cut(s) 423
BamHI GGATCC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 491
BanII GRGCYC 3 cut(s) 650, 796, 1209
BarI GAAGNNNNNNTAC 2 cut(s) 1141, 1173
BbsI GAAGAC 2 cut(s) 1069, 1208
Bbv12I GWGCWC 2 cut(s) 650, 1209
BbvI GCAGC 3 cut(s) 78, 691, 713
BccI CCATC 6 cut(s) 73, 268, 328, 608, 721, 1125
BceAI ACGGC 1 cut(s) 127
BcgI CGANNNNNNTGC 4 cut(s) 73, 107, 491, 525
BciT130I CCWGG 2 cut(s) 806, 1092
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 3 cut(s) 73, 891, 1122
BcoDI GTCTC 2 cut(s) 415, 957
BfaI CTAG 1 cut(s) 1239
BisI GCNGC 4 cut(s) 92, 702, 705, 1276
BlsI GCNGC 4 cut(s) 93, 703, 706, 1277
Bme1390I CCNGG 5 cut(s) 73, 806, 891, 1092, 1122
BmeT110I CYCGRG 1 cut(s) 1054
BmgT120I GGNCC 1 cut(s) 802
BmiI GGNNCC 4 cut(s) 53, 183, 493, 803
BmrFI CCNGG 5 cut(s) 73, 806, 891, 1092, 1122
BmrI ACTGGG 1 cut(s) 918
BmsI GCATC 2 cut(s) 336, 884
BmuI ACTGGG 1 cut(s) 918
BpiI GAAGAC 2 cut(s) 1069, 1208
BpmI CTGGAG 1 cut(s) 1149
BpuMI CCSGG 3 cut(s) 73, 891, 1122
BsaJI CCNNGG 2 cut(s) 1132, 1210
BsaXI ACNNNNNCTCC 4 cut(s) 1051, 1081, 1147, 1177
Bsc4I CCNNNNNNNGG 6 cut(s) 71, 149, 167, 368, 466, 1097
Bse1I ACTGG 1 cut(s) 913
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 2 cut(s) 806, 1092
BseDI CCNNGG 2 cut(s) 1132, 1210
BseGI GGATG 6 cut(s) 28, 81, 348, 870, 899, 1117
BseLI CCNNNNNNNGG 6 cut(s) 71, 149, 167, 368, 466, 1097
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 3 cut(s) 194, 405, 1199
BseNI ACTGG 1 cut(s) 913
BseRI GAGGAG 2 cut(s) 1072, 1095
BseSI GKGCMC 2 cut(s) 479, 496
BseXI GCAGC 3 cut(s) 78, 691, 713
BseYI CCCAGC 1 cut(s) 338
BsgI GTGCAG 1 cut(s) 968
Bsh1236I CGCG 1 cut(s) 717
Bsh1285I CGRYCG 1 cut(s) 996
BshFI GGCC 3 cut(s) 423, 804, 1275
BshNI GGYRCC 1 cut(s) 491
BsiEI CGRYCG 1 cut(s) 996
BsiHKAI GWGCWC 2 cut(s) 650, 1209
BsiHKCI CYCGRG 1 cut(s) 1054
BsiSI CCGG 3 cut(s) 72, 890, 1122
BslI CCNNNNNNNGG 6 cut(s) 71, 149, 167, 368, 466, 1097
BsmAI GTCTC 2 cut(s) 415, 957
BsmI GAATGC 2 cut(s) 590, 613
BsnI GGCC 3 cut(s) 423, 804, 1275
BsoBI CYCGRG 1 cut(s) 1054
Bsp1286I GDGCHC 5 cut(s) 479, 496, 650, 796, 1209
Bsp143I GATC 7 cut(s) 181, 208, 508, 539, 763, 869, 933
Bsp19I CCATGG 1 cut(s) 1132
BspACI CCGC 5 cut(s) 89, 717, 759, 862, 1276
BspANI GGCC 3 cut(s) 423, 804, 1275
BspCNI CTCAG 3 cut(s) 195, 406, 1198
BspFNI CGCG 1 cut(s) 717
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 4 cut(s) 53, 183, 493, 803
BspPI GGATC 4 cut(s) 176, 189, 547, 758
BspT107I GGYRCC 1 cut(s) 491
BsrBI CCGCTC 1 cut(s) 862
BsrDI GCAATG 1 cut(s) 267
BsrI ACTGG 1 cut(s) 913
BssECI CCNNGG 2 cut(s) 1132, 1210
BssMI GATC 7 cut(s) 181, 208, 508, 539, 763, 869, 933
BssT1I CCWWGG 2 cut(s) 1132, 1210
Bst2UI CCWGG 2 cut(s) 806, 1092
Bst4CI ACNGT 3 cut(s) 17, 776, 997
Bst6I CTCTTC 2 cut(s) 519, 838
BstAPI GCANNNNNTGC 2 cut(s) 955, 1268
BstC8I GCNNGC 2 cut(s) 860, 1273
BstDEI CTNAG 3 cut(s) 203, 414, 1185
BstDSI CCRYGG 1 cut(s) 1132
BstF5I GGATG 6 cut(s) 28, 81, 348, 870, 899, 1117
BstFNI CGCG 1 cut(s) 717
BstHHI GCGC 1 cut(s) 717
BstKTI GATC 7 cut(s) 184, 211, 511, 542, 766, 872, 936
BstMAI GTCTC 2 cut(s) 415, 957
BstMBI GATC 7 cut(s) 181, 208, 508, 539, 763, 869, 933
BstMCI CGRYCG 1 cut(s) 996
BstMWI GCNNNNNNNGC 4 cut(s) 721, 955, 1150, 1268
BstNI CCWGG 2 cut(s) 806, 1092
BstSCI CCNGG 5 cut(s) 71, 804, 889, 1090, 1120
BstSLI GKGCMC 2 cut(s) 479, 496
BstUI CGCG 1 cut(s) 717
BstV1I GCAGC 3 cut(s) 78, 691, 713
BstV2I GAAGAC 2 cut(s) 1069, 1208
BstX2I RGATCY 3 cut(s) 181, 539, 763
BstXI CCANNNNNNTGG 1 cut(s) 274
BstYI RGATCY 3 cut(s) 181, 539, 763
BsuRI GGCC 3 cut(s) 423, 804, 1275
BtgI CCRYGG 1 cut(s) 1132
BtgZI GCGATG 2 cut(s) 131, 287
BtsCI GGATG 6 cut(s) 28, 81, 348, 870, 899, 1117
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 860, 1273
CaiI CAGNNNCTG 1 cut(s) 955
CciI TCATGA 1 cut(s) 10
CfoI GCGC 1 cut(s) 717
Cfr13I GGNCC 1 cut(s) 802
CviAII CATG 5 cut(s) 11, 133, 363, 785, 1133
DdeI CTNAG 3 cut(s) 203, 414, 1185
DpnI GATC 7 cut(s) 183, 210, 510, 541, 765, 871, 935
DpnII GATC 7 cut(s) 181, 208, 508, 539, 763, 869, 933
EaeI YGGCCR 1 cut(s) 421
Eam1104I CTCTTC 2 cut(s) 519, 838
EarI CTCTTC 2 cut(s) 519, 838
Ecl136II GAGCTC 2 cut(s) 648, 1207
Eco130I CCWWGG 2 cut(s) 1132, 1210
Eco24I GRGCYC 3 cut(s) 650, 796, 1209
Eco53kI GAGCTC 2 cut(s) 648, 1207
Eco57I CTGAAG 3 cut(s) 543, 1063, 1143
Eco88I CYCGRG 1 cut(s) 1054
EcoICRI GAGCTC 2 cut(s) 648, 1207
EcoRII CCWGG 2 cut(s) 804, 1090
EcoT14I CCWWGG 2 cut(s) 1132, 1210
EcoT38I GRGCYC 3 cut(s) 650, 796, 1209
ErhI CCWWGG 2 cut(s) 1132, 1210
FaeI CATG 5 cut(s) 14, 136, 366, 788, 1136
FalI AAGNNNNNCTT 2 cut(s) 1032, 1064
FatI CATG 5 cut(s) 10, 132, 362, 784, 1132
FauNDI CATATG 1 cut(s) 1224
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 4 cut(s) 92, 702, 705, 1276
FokI GGATG 6 cut(s) 35, 88, 355, 877, 906, 1104
FriOI GRGCYC 3 cut(s) 650, 796, 1209
Fsp4HI GCNGC 4 cut(s) 92, 702, 705, 1276
FspBI CTAG 1 cut(s) 1239
GlaI GCGC 1 cut(s) 716
GluI GCNGC 4 cut(s) 92, 702, 705, 1276
GsaI CCCAGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 1149
HaeIII GGCC 3 cut(s) 423, 804, 1275
HapII CCGG 3 cut(s) 72, 890, 1122
HhaI GCGC 1 cut(s) 717
Hin1II CATG 5 cut(s) 14, 136, 366, 788, 1136
Hin6I GCGC 1 cut(s) 715
HinP1I GCGC 1 cut(s) 715
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 9 cut(s) 85, 199, 280, 326, 578, 1000, 1030, 1095, 1235
HpaII CCGG 3 cut(s) 72, 890, 1122
HphI GGTGA 1 cut(s) 1100
Hpy188I TCNGA 8 cut(s) 204, 325, 415, 450, 523, 652, 660, 1188
Hpy188III TCNNGA 6 cut(s) 11, 108, 575, 878, 1004, 1166
HpyAV CCTTC 4 cut(s) 555, 792, 907, 1185
HpyCH4III ACNGT 3 cut(s) 17, 776, 997
HpyCH4V TGCA 6 cut(s) 590, 707, 897, 949, 958, 1271
HpyF10VI GCNNNNNNNGC 4 cut(s) 721, 955, 1150, 1268
HpyF3I CTNAG 3 cut(s) 203, 414, 1185
Hsp92II CATG 5 cut(s) 14, 136, 366, 788, 1136
HspAI GCGC 1 cut(s) 715
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 7 cut(s) 181, 208, 508, 539, 763, 869, 933
LmnI GCTCC 5 cut(s) 51, 378, 1070, 1168, 1212
Lsp1109I GCAGC 3 cut(s) 78, 691, 713
LweI GCATC 2 cut(s) 336, 884
MaeI CTAG 1 cut(s) 1239
MaeIII GTNAC 1 cut(s) 776
MalI GATC 7 cut(s) 183, 210, 510, 541, 765, 871, 935
MbiI CCGCTC 1 cut(s) 862
MboI GATC 7 cut(s) 181, 208, 508, 539, 763, 869, 933
MboII GAAGA 7 cut(s) 60, 534, 536, 688, 855, 1069, 1208
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 3 cut(s) 181, 539, 763
MhlI GDGCHC 5 cut(s) 479, 496, 650, 796, 1209
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 6 cut(s) 186, 245, 516, 748, 940, 1169
MluNI TGGCCA 1 cut(s) 423
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 606
MnlI CCTC 9 cut(s) 13, 310, 369, 456, 463, 836, 1050, 1116, 1194
Mox20I TGGCCA 1 cut(s) 423
MroXI GAANNNNTTC 2 cut(s) 885, 1029
MscI TGGCCA 1 cut(s) 423
MseI TTAA 4 cut(s) 138, 624, 1011, 1050
MslI CAYNNNNRTG 3 cut(s) 15, 272, 389
Msp20I TGGCCA 1 cut(s) 423
MspA1I CMGCKG 2 cut(s) 91, 704
MspI CCGG 3 cut(s) 72, 890, 1122
MspR9I CCNGG 5 cut(s) 73, 806, 891, 1092, 1122
MunI CAATTG 1 cut(s) 186
Mva1269I GAATGC 2 cut(s) 590, 613
MvaI CCWGG 2 cut(s) 806, 1092
MvnI CGCG 1 cut(s) 717
MwoI GCNNNNNNNGC 4 cut(s) 721, 955, 1150, 1268
NciI CCSGG 3 cut(s) 73, 891, 1122
NcoI CCATGG 1 cut(s) 1132
NdeI CATATG 1 cut(s) 1224
NdeII GATC 7 cut(s) 181, 208, 508, 539, 763, 869, 933
NlaIII CATG 5 cut(s) 14, 136, 366, 788, 1136
NlaIV GGNNCC 4 cut(s) 53, 183, 493, 803
PaeR7I CTCGAG 1 cut(s) 1054
PagI TCATGA 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PctI GAATGC 2 cut(s) 590, 613
PdmI GAANNNNTTC 2 cut(s) 885, 1029
PfeI GAWTC 8 cut(s) 85, 280, 326, 578, 1000, 1030, 1095, 1235
PflMI CCANNNNNTGG 1 cut(s) 368
PfoI TCCNGGA 3 cut(s) 71, 889, 1090
PkrI GCNGC 4 cut(s) 93, 703, 706, 1277
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
Psp124BI GAGCTC 2 cut(s) 650, 1209
Psp6I CCWGG 2 cut(s) 804, 1090
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 2 cut(s) 804, 1090
PspN4I GGNNCC 4 cut(s) 53, 183, 493, 803
PspPI GGNCC 1 cut(s) 802
PspXI VCTCGAGB 1 cut(s) 1054
PstNI CAGNNNCTG 1 cut(s) 955
PsuI RGATCY 3 cut(s) 181, 539, 763
PvuII CAGCTG 1 cut(s) 704
RseI CAYNNNNRTG 3 cut(s) 15, 272, 389
SacI GAGCTC 2 cut(s) 650, 1209
SaqAI TTAA 4 cut(s) 138, 624, 1011, 1050
SatI GCNGC 4 cut(s) 92, 702, 705, 1276
Sau3AI GATC 7 cut(s) 181, 208, 508, 539, 763, 869, 933
Sau96I GGNCC 1 cut(s) 802
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 5 cut(s) 73, 806, 891, 1092, 1122
SduI GDGCHC 5 cut(s) 479, 496, 650, 796, 1209
SfaNI GCATC 2 cut(s) 336, 884
Sfr274I CTCGAG 1 cut(s) 1054
SlaI CTCGAG 1 cut(s) 1054
SmiMI CAYNNNNRTG 3 cut(s) 15, 272, 389
SmlI CTYRAG 1 cut(s) 1054
SmoI CTYRAG 1 cut(s) 1054
Sse9I AATT 6 cut(s) 186, 245, 516, 748, 940, 1169
SsiI CCGC 5 cut(s) 89, 717, 759, 862, 1276
SspMI CTAG 1 cut(s) 1239
SstI GAGCTC 2 cut(s) 650, 1209
StyD4I CCNGG 5 cut(s) 71, 804, 889, 1090, 1120
StyI CCWWGG 2 cut(s) 1132, 1210
TaaI ACNGT 3 cut(s) 17, 776, 997
TaqI TCGA 2 cut(s) 107, 1055
TasI AATT 6 cut(s) 186, 245, 516, 748, 940, 1169
TauI GCSGC 1 cut(s) 1278
TfiI GAWTC 8 cut(s) 85, 280, 326, 578, 1000, 1030, 1095, 1235
Tru1I TTAA 4 cut(s) 138, 624, 1011, 1050
Tru9I TTAA 4 cut(s) 138, 624, 1011, 1050
TscAI CASTG 1 cut(s) 22
TseI GCWGC 3 cut(s) 91, 701, 704
TspDTI ATGAA 4 cut(s) 92, 183, 773, 998
TspGWI ACGGA 1 cut(s) 1042
TspRI CASTG 1 cut(s) 22
Van91I CCANNNNNTGG 1 cut(s) 368
XapI RAATTY 4 cut(s) 245, 516, 748, 1169
XhoI CTCGAG 1 cut(s) 1054
XmnI GAANNNNTTC 2 cut(s) 885, 1029
XspI CTAG 1 cut(s) 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.