AT1G10522

response to light intensity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015052
Physical Location & Seq
Forward (+)
3469512 .. 3471488
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10522.1

Sequence Viewer

Length: 540 bp
ATGGCTTCAATGCACGAAGCTCTGTTCTCTTCTCGGCTTCTTCAAGTCAATTCTTCTTTTTCCTTCCGTTGCGCTCTTCCAATTATCTCTTCACCAGCTGCAGTATCTTGCGCAATCAAATCGACCCAGTTTTTTAAACAGCGTTGTAGAACCAAAGTGAGGGACTTTTCTCTATCTTCACTGTCCCGGAGAGGGTTCGTTTGCAGAGCTGCTGAGTACAAGTTTCCGGATCCCATACCTGAATTCGCCGAAGCTGAGACTGAGAAATTTAGGGACCATATGTTAAACAAACTATCAAAAAGAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCTGCACTGAGATCTTCGAGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTGGTGATACCTTTCATTGACATGGCAGATACTCTCAACGAAAGGGAATTGCCTGGAGGTCCACAAGCCGCCCGAGCAGCTATTAAATGGGCTCAGGATCATGTAGACAAGGACTGGAAGGAATGGACCGGCACTGATTAG

Protein Analysis

179

Amino Acids

20.25

Weight (kDa)

5.7

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10522 AT1G10522
fragaria_vesca FvH4_4g35001
malus_domestica MD13G1086700.v1.1 MD16G1086800.v1.1 MD16G1087000.v1.1
prunus_persica Prupe.1G259800_v2.0.a1
pyrus_communis pycom16g07480
rosa_chinensis RchiOBHm_Chr4g0444531
rosa_laevigata RLG00000005826
rosa_multiflora Rmu_sc0003839.1_g000006 Rmu_sc0012648.1_g000008
rosa_rugosa Rorug04G0353400
rosa_samantha Rh4CG439800 Rh4DG420700
rosa_wichuraiana Rw4G035530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 112, 371
AccI GTMKAC 1 cut(s) 504
AccIII TCCGGA 1 cut(s) 226
AciI CCGC 1 cut(s) 468
AclWI GGATC 3 cut(s) 224, 237, 504
AcsI RAATTY 2 cut(s) 242, 266
AfaI GTAC 2 cut(s) 218, 394
AfiI CCNNNNNNNGG 2 cut(s) 159, 192
AgsI TTSAA 3 cut(s) 9, 44, 314
AjnI CCWGG 2 cut(s) 388, 451
AjuI GAANNNNNNNTTGG 2 cut(s) 73, 105
AluBI AGCT 5 cut(s) 20, 98, 209, 254, 479
AluI AGCT 5 cut(s) 20, 98, 209, 254, 479
Alw26I GTCTC 2 cut(s) 251, 353
AlwI GGATC 3 cut(s) 224, 237, 504
Ama87I CYCGRG 1 cut(s) 471
Aor13HI TCCGGA 1 cut(s) 226
ApeKI GCWGC 3 cut(s) 98, 209, 476
ApoI RAATTY 2 cut(s) 242, 266
AspLEI GCGC 3 cut(s) 74, 113, 372
AspS9I GGNCC 4 cut(s) 274, 386, 458, 525
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 2 cut(s) 84, 415
AvaI CYCGRG 1 cut(s) 471
AvaII GGWCC 4 cut(s) 274, 386, 458, 525
BamHI GGATCC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 493
BbsI GAAGAC 1 cut(s) 321
BbvI GCAGC 3 cut(s) 85, 196, 488
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BciT130I CCWGG 2 cut(s) 390, 453
BcnI CCSGG 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 251, 353
BfmI CTRYAG 1 cut(s) 99
BglII AGATCT 2 cut(s) 304, 351
BisI GCNGC 4 cut(s) 99, 210, 468, 477
BlsI GCNGC 4 cut(s) 100, 211, 469, 478
Bme1390I CCNGG 3 cut(s) 187, 390, 453
Bme18I GGWCC 4 cut(s) 274, 386, 458, 525
BmeT110I CYCGRG 1 cut(s) 471
BmgT120I GGNCC 4 cut(s) 274, 386, 458, 525
BmiI GGNNCC 2 cut(s) 231, 275
BmrFI CCNGG 3 cut(s) 187, 390, 453
BmrI ACTGGG 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 474
Bpu10I CCTNAGC 1 cut(s) 492
BpuMI CCSGG 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 192
Bse118I RCCGGY 1 cut(s) 527
Bse1I ACTGG 2 cut(s) 127, 518
BseAI TCCGGA 1 cut(s) 226
BseBI CCWGG 2 cut(s) 390, 453
BseLI CCNNNNNNNGG 2 cut(s) 159, 192
BseMII CTCAG 5 cut(s) 204, 246, 252, 339, 506
BseNI ACTGG 2 cut(s) 127, 518
BseXI GCAGC 3 cut(s) 85, 196, 488
BsgI GTGCAG 1 cut(s) 328
BsiHKCI CYCGRG 1 cut(s) 471
BsiSI CCGG 3 cut(s) 187, 227, 528
BslFI GGGAC 3 cut(s) 169, 176, 287
BslI CCNNNNNNNGG 2 cut(s) 159, 192
BsmAI GTCTC 2 cut(s) 251, 353
BsmBI CGTCTC 1 cut(s) 353
BsmFI GGGAC 3 cut(s) 169, 176, 287
BsoBI CYCGRG 1 cut(s) 471
Bsp1286I GDGCHC 1 cut(s) 493
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 4 cut(s) 229, 304, 351, 496
BspACI CCGC 1 cut(s) 468
BspCNI CTCAG 5 cut(s) 205, 247, 253, 340, 505
BspEI TCCGGA 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 231, 275
BspMAI CTGCAG 1 cut(s) 103
BspPI GGATC 3 cut(s) 224, 237, 504
BspQI GCTCTTC 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 527
BsrI ACTGG 2 cut(s) 127, 518
BssAI RCCGGY 1 cut(s) 527
BssMI GATC 4 cut(s) 229, 304, 351, 496
Bst2UI CCWGG 2 cut(s) 390, 453
Bst4CI ACNGT 1 cut(s) 183
Bst6I CTCTTC 3 cut(s) 34, 81, 94
BstDEI CTNAG 5 cut(s) 213, 255, 261, 348, 492
BstHHI GCGC 3 cut(s) 74, 113, 372
BstKTI GATC 4 cut(s) 232, 307, 354, 499
BstMAI GTCTC 2 cut(s) 251, 353
BstMBI GATC 4 cut(s) 229, 304, 351, 496
BstMWI GCNNNNNNNGC 2 cut(s) 473, 476
BstNI CCWGG 2 cut(s) 390, 453
BstSCI CCNGG 3 cut(s) 185, 388, 451
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 3 cut(s) 85, 196, 488
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 3 cut(s) 229, 304, 351
BstYI RGATCY 3 cut(s) 229, 304, 351
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 4 cut(s) 179, 345, 379, 531
CfoI GCGC 3 cut(s) 74, 113, 372
Cfr10I RCCGGY 1 cut(s) 527
Cfr13I GGNCC 4 cut(s) 274, 386, 458, 525
CsiI ACCWGGT 1 cut(s) 388
Csp6I GTAC 2 cut(s) 217, 393
CviAII CATG 2 cut(s) 421, 500
CviJI RGCY 9 cut(s) 5, 20, 37, 98, 209, 254, 467, 479, 491
CviKI_1 RGCY 9 cut(s) 5, 20, 37, 98, 209, 254, 467, 479, 491
CviQI GTAC 2 cut(s) 217, 393
DdeI CTNAG 5 cut(s) 213, 255, 261, 348, 492
DpnI GATC 4 cut(s) 231, 306, 353, 498
DpnII GATC 4 cut(s) 229, 304, 351, 496
DraI TTTAAA 1 cut(s) 136
Eam1104I CTCTTC 3 cut(s) 34, 81, 94
EarI CTCTTC 3 cut(s) 34, 81, 94
Eco24I GRGCYC 1 cut(s) 493
Eco47I GGWCC 4 cut(s) 274, 386, 458, 525
Eco88I CYCGRG 1 cut(s) 471
EcoO109I RGGNCCY 1 cut(s) 386
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 388, 451
EcoT38I GRGCYC 1 cut(s) 493
Esp3I CGTCTC 1 cut(s) 353
FaeI CATG 2 cut(s) 424, 503
FaiI YATR 6 cut(s) 236, 279, 281, 381, 422, 501
FaqI GGGAC 3 cut(s) 169, 176, 287
FatI CATG 2 cut(s) 420, 499
FauNDI CATATG 1 cut(s) 279
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 4 cut(s) 99, 210, 468, 477
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 4 cut(s) 99, 210, 468, 477
FspI TGCGCA 2 cut(s) 112, 371
GlaI GCGC 3 cut(s) 73, 112, 371
GluI GCNGC 4 cut(s) 99, 210, 468, 477
GsuI CTGGAG 1 cut(s) 474
HapII CCGG 3 cut(s) 187, 227, 528
HhaI GCGC 3 cut(s) 74, 113, 372
Hin1II CATG 2 cut(s) 424, 503
Hin6I GCGC 3 cut(s) 72, 111, 370
HinP1I GCGC 3 cut(s) 72, 111, 370
HinfI GANTC 2 cut(s) 317, 339
HpaII CCGG 3 cut(s) 187, 227, 528
HphI GGTGA 2 cut(s) 84, 415
Hpy166II GTNNAC 3 cut(s) 395, 461, 505
Hpy188III TCNNGA 3 cut(s) 227, 358, 494
Hpy8I GTNNAC 3 cut(s) 395, 461, 505
HpyAV CCTTC 2 cut(s) 73, 511
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 4 cut(s) 13, 101, 204, 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 473, 476
HpyF3I CTNAG 5 cut(s) 213, 255, 261, 348, 492
HpySE526I ACGT 1 cut(s) 362
Hsp92II CATG 2 cut(s) 424, 503
HspAI GCGC 3 cut(s) 72, 111, 370
Kpn2I TCCGGA 1 cut(s) 226
Kzo9I GATC 4 cut(s) 229, 304, 351, 496
LguI GCTCTTC 1 cut(s) 81
Lsp1109I GCAGC 3 cut(s) 85, 196, 488
MabI ACCWGGT 1 cut(s) 388
MaeII ACGT 1 cut(s) 362
MalI GATC 4 cut(s) 231, 306, 353, 498
MboI GATC 4 cut(s) 229, 304, 351, 496
MboII GAAGA 8 cut(s) 21, 32, 45, 68, 81, 168, 326, 346
MflI RGATCY 3 cut(s) 229, 304, 351
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 6 cut(s) 49, 81, 242, 266, 330, 446
MlyI GAGTC 2 cut(s) 311, 348
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 4 cut(s) 153, 185, 377, 449
MroI TCCGGA 1 cut(s) 226
MseI TTAA 3 cut(s) 135, 284, 483
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 3 cut(s) 187, 227, 528
MspR9I CCNGG 3 cut(s) 187, 390, 453
MvaI CCWGG 2 cut(s) 390, 453
MwoI GCNNNNNNNGC 2 cut(s) 473, 476
NciI CCSGG 1 cut(s) 187
NdeI CATATG 1 cut(s) 279
NdeII GATC 4 cut(s) 229, 304, 351, 496
NlaIII CATG 2 cut(s) 424, 503
NlaIV GGNNCC 2 cut(s) 231, 275
NmeAIII GCCGAG 1 cut(s) 13
NsbI TGCGCA 2 cut(s) 112, 371
PciSI GCTCTTC 1 cut(s) 81
PfoI TCCNGGA 1 cut(s) 185
PkrI GCNGC 4 cut(s) 100, 211, 469, 478
PleI GAGTC 2 cut(s) 311, 347
PpsI GAGTC 2 cut(s) 311, 347
PpuMI RGGWCCY 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 386
Psp6I CCWGG 2 cut(s) 388, 451
PspGI CCWGG 2 cut(s) 388, 451
PspN4I GGNNCC 2 cut(s) 231, 275
PspPI GGNCC 4 cut(s) 274, 386, 458, 525
PspPPI RGGWCCY 1 cut(s) 386
PstI CTGCAG 1 cut(s) 103
PsuI RGATCY 3 cut(s) 229, 304, 351
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 2 cut(s) 218, 394
RsaNI GTAC 2 cut(s) 217, 393
RseI CAYNNNNRTG 1 cut(s) 419
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 3 cut(s) 135, 284, 483
SatI GCNGC 4 cut(s) 99, 210, 468, 477
Sau3AI GATC 4 cut(s) 229, 304, 351, 496
Sau96I GGNCC 4 cut(s) 274, 386, 458, 525
SchI GAGTC 2 cut(s) 311, 348
ScrFI CCNGG 3 cut(s) 187, 390, 453
SduI GDGCHC 1 cut(s) 493
SexAI ACCWGGT 1 cut(s) 388
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 4 cut(s) 274, 386, 458, 525
SmiMI CAYNNNNRTG 1 cut(s) 419
Sse9I AATT 6 cut(s) 49, 81, 242, 266, 330, 446
SsiI CCGC 1 cut(s) 468
StyD4I CCNGG 3 cut(s) 185, 388, 451
TaaI ACNGT 1 cut(s) 183
TaiI ACGT 1 cut(s) 365
TaqI TCGA 2 cut(s) 122, 357
TasI AATT 6 cut(s) 49, 81, 242, 266, 330, 446
TatI WGTACW 1 cut(s) 216
TauI GCSGC 1 cut(s) 470
Tru1I TTAA 3 cut(s) 135, 284, 483
Tru9I TTAA 3 cut(s) 135, 284, 483
TscAI CASTG 4 cut(s) 186, 352, 379, 538
TseI GCWGC 3 cut(s) 98, 209, 476
TspDTI ATGAA 2 cut(s) 342, 403
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 4 cut(s) 186, 352, 379, 538
VpaK11BI GGWCC 4 cut(s) 274, 386, 458, 525
XapI RAATTY 2 cut(s) 242, 266
XmiI GTMKAC 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.