Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015052

Physical Location & Seq

Genomic Coordinates Forward (+)

2184623 .. 2185814

Gene Structure 1192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005826

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAGTTGGACTGGTGTAACTCCCCTTGTATCAGCAACTCCTCCAAAGCTTCACCAATCCTCTCCCTTCTATGCTTCTCCTTCTTATTCTTCTTCTTCTTCTTCATACTCTTCATTCCCAACTGTTAAGGTTTCATCAAGCTTGTCACATAGATTTAGTATTAGGTACCTTTCTTCAAAGAGACAGATATGCAGAGCAGCAGCCGAGTACAGATTTCCGGACCCAATTCCAGATTTTGCTGATGCTGAGACTGAGAAGTTCAGGACCCATCTCCTGAATAAGCTATCCAAGAAAGAGGTGTATGACGACTCTGTTGAAGAGGTCGTAGGGATCTGCACTGAGATATTTGGTACTTTCTTGCACACCGAGTATGGTGGTCCTGGGACGCTCTTGGTAGTTCCCTTCATTGATATGGCTGATACTCTAAACGAGCAGGGATTACCTGGAGGACCGCAAGCTGCGCGTGCTGCCATCAAATGGGCACAGAGACATGTTGACAAGGACTGGAAGGAATGGACTGGTGATGACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009295 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009642 GO:0010468 GO:0019222 GO:0030880 GO:0032991 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050896 GO:0060255 GO:0061695 GO:0065007 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.67

Weight (kDa)

5.94

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10522 AT1G10522
fragaria_vesca	FvH4_4g35001
malus_domestica	MD13G1086700.v1.1 MD16G1086800.v1.1 MD16G1087000.v1.1
prunus_persica	Prupe.1G259800_v2.0.a1
pyrus_communis	pycom16g07480
rosa_chinensis	RchiOBHm_Chr4g0444531
rosa_laevigata	RLG00000005826
rosa_multiflora	Rmu_sc0003839.1_g000006 Rmu_sc0012648.1_g000008
rosa_rugosa	Rorug04G0353400
rosa_samantha	Rh4CG439800 Rh4DG420700
rosa_wichuraiana	Rw4G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	165
AccB1I	GGYRCC	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	477
AccII	CGCG	1 cut(s)	463
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	1 cut(s)	452
AclWI	GGATC	1 cut(s)	338
AfaI	GTAC	3 cut(s)	167, 209, 352
AfiI	CCNNNNNNNGG	1 cut(s)	477
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	2 cut(s)	177, 317
AjnI	CCWGG	2 cut(s)	379, 442
AluBI	AGCT	4 cut(s)	49, 141, 283, 458
AluI	AGCT	4 cut(s)	49, 141, 283, 458
Alw26I	GTCTC	3 cut(s)	175, 242, 481
AlwI	GGATC	1 cut(s)	338
Aor13HI	TCCGGA	1 cut(s)	217
ApeKI	GCWGC	4 cut(s)	197, 200, 458, 467
Asp718I	GGTACC	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	4 cut(s)	220, 264, 377, 449
AsuHPI	GGTGA	2 cut(s)	44, 533
AvaII	GGWCC	4 cut(s)	220, 264, 377, 449
BaeGI	GKGCMC	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	165
BbvI	GCAGC	4 cut(s)	209, 212, 445, 454
BccI	CCATC	2 cut(s)	276, 479
BciT130I	CCWGG	2 cut(s)	381, 444
BcoDI	GTCTC	3 cut(s)	175, 242, 481
BisI	GCNGC	4 cut(s)	198, 201, 459, 468
BlsI	GCNGC	4 cut(s)	199, 202, 460, 469
Bme1390I	CCNGG	2 cut(s)	381, 444
Bme18I	GGWCC	4 cut(s)	220, 264, 377, 449
BmgT120I	GGNCC	4 cut(s)	220, 264, 377, 449
BmiI	GGNNCC	3 cut(s)	167, 222, 266
BmrFI	CCNGG	2 cut(s)	381, 444
BmsI	GCATC	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	380
BsaWI	WCCGGW	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse1I	ACTGG	3 cut(s)	16, 509, 523
BseAI	TCCGGA	1 cut(s)	217
BseBI	CCWGG	2 cut(s)	381, 444
BseDI	CCNNGG	1 cut(s)	380
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseMII	CTCAG	3 cut(s)	237, 243, 330
BseNI	ACTGG	3 cut(s)	16, 509, 523
BseRI	GAGGAG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	484
BseXI	GCAGC	4 cut(s)	209, 212, 445, 454
BsgI	GTGCAG	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	463
BshNI	GGYRCC	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	477
BsmAI	GTCTC	3 cut(s)	175, 242, 481
BsmFI	GGGAC	1 cut(s)	397
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	330
BspACI	CCGC	1 cut(s)	452
BspCNI	CTCAG	3 cut(s)	238, 244, 331
BspEI	TCCGGA	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	463
BspLI	GGNNCC	3 cut(s)	167, 222, 266
BspPI	GGATC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	165
BsrI	ACTGG	3 cut(s)	16, 509, 523
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	1 cut(s)	330
Bst2UI	CCWGG	2 cut(s)	381, 444
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	2 cut(s)	115, 312
BstC8I	GCNNGC	2 cut(s)	456, 465
BstDEI	CTNAG	3 cut(s)	246, 252, 339
BstFNI	CGCG	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	1 cut(s)	333
BstMAI	GTCTC	3 cut(s)	175, 242, 481
BstMBI	GATC	1 cut(s)	330
BstMWI	GCNNNNNNNGC	3 cut(s)	460, 464, 467
BstNI	CCWGG	2 cut(s)	381, 444
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	2 cut(s)	379, 442
BstSLI	GKGCMC	1 cut(s)	484
BstUI	CGCG	1 cut(s)	463
BstV1I	GCAGC	4 cut(s)	209, 212, 445, 454
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	2 cut(s)	456, 465
CfoI	GCGC	1 cut(s)	463
Cfr13I	GGNCC	4 cut(s)	220, 264, 377, 449
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	3 cut(s)	166, 208, 351
CviAII	CATG	1 cut(s)	491
CviJI	RGCY	6 cut(s)	49, 141, 203, 283, 416, 458
CviKI_1	RGCY	6 cut(s)	49, 141, 203, 283, 416, 458
CviQI	GTAC	3 cut(s)	166, 208, 351
DdeI	CTNAG	3 cut(s)	246, 252, 339
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
Eam1104I	CTCTTC	2 cut(s)	115, 312
EarI	CTCTTC	2 cut(s)	115, 312
Eco47I	GGWCC	4 cut(s)	220, 264, 377, 449
EcoO109I	RGGNCCY	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	379, 442
FaeI	CATG	1 cut(s)	494
FaiI	YATR	8 cut(s)	72, 106, 150, 190, 303, 372, 413, 492
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	1 cut(s)	490
Fnu4HI	GCNGC	4 cut(s)	198, 201, 459, 468
Fsp4HI	GCNGC	4 cut(s)	198, 201, 459, 468
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	4 cut(s)	198, 201, 459, 468
GsuI	CTGGAG	1 cut(s)	465
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	394
HhaI	GCGC	1 cut(s)	463
Hin1II	CATG	1 cut(s)	494
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	2 cut(s)	47, 139
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	2 cut(s)	44, 533
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188III	TCNNGA	4 cut(s)	218, 230, 262, 274
Hpy8I	GTNNAC	1 cut(s)	496
HpyAV	CCTTC	4 cut(s)	76, 90, 412, 502
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	192, 336, 361
HpyF10VI	GCNNNNNNNGC	3 cut(s)	460, 464, 467
HpyF3I	CTNAG	3 cut(s)	246, 252, 339
Hsp92II	CATG	1 cut(s)	494
HspAI	GCGC	1 cut(s)	461
Kpn2I	TCCGGA	1 cut(s)	217
KpnI	GGTACC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	330
Lsp1109I	GCAGC	4 cut(s)	209, 212, 445, 454
LweI	GCATC	1 cut(s)	232
MaeIII	GTNAC	2 cut(s)	16, 144
MalI	GATC	1 cut(s)	332
MboI	GATC	1 cut(s)	330
MboII	GAAGA	8 cut(s)	81, 84, 87, 90, 93, 102, 165, 329
MflI	RGATCY	1 cut(s)	330
MhlI	GDGCHC	1 cut(s)	484
MluCI	AATT	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	5 cut(s)	51, 70, 289, 313, 440
MroI	TCCGGA	1 cut(s)	217
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	410
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	2 cut(s)	381, 444
MvaI	CCWGG	2 cut(s)	381, 444
MvnI	CGCG	1 cut(s)	463
MwoI	GCNNNNNNNGC	3 cut(s)	460, 464, 467
NdeII	GATC	1 cut(s)	330
NlaIII	CATG	1 cut(s)	494
NlaIV	GGNNCC	3 cut(s)	167, 222, 266
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	144
NspI	RCATGY	1 cut(s)	494
PciI	ACATGT	1 cut(s)	490
PflMI	CCANNNNNTGG	1 cut(s)	477
PkrI	GCNGC	4 cut(s)	199, 202, 460, 469
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
PpuMI	RGGWCCY	1 cut(s)	264
PscI	ACATGT	1 cut(s)	490
Psp5II	RGGWCCY	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	379, 442
PspGI	CCWGG	2 cut(s)	379, 442
PspN4I	GGNNCC	3 cut(s)	167, 222, 266
PspPI	GGNCC	4 cut(s)	220, 264, 377, 449
PspPPI	RGGWCCY	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	330
RsaI	GTAC	3 cut(s)	167, 209, 352
RsaNI	GTAC	3 cut(s)	166, 208, 351
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	4 cut(s)	198, 201, 459, 468
Sau3AI	GATC	1 cut(s)	330
Sau96I	GGNCC	4 cut(s)	220, 264, 377, 449
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	2 cut(s)	381, 444
SduI	GDGCHC	1 cut(s)	484
SfaNI	GCATC	1 cut(s)	232
SinI	GGWCC	4 cut(s)	220, 264, 377, 449
SmiMI	CAYNNNNRTG	1 cut(s)	410
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	1 cut(s)	452
StyD4I	CCNGG	2 cut(s)	379, 442
TaaI	ACNGT	1 cut(s)	124
TasI	AATT	1 cut(s)	225
TatI	WGTACW	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	1 cut(s)	144
TseI	GCWGC	4 cut(s)	197, 200, 458, 467
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	4 cut(s)	93, 102, 123, 394
TspRI	CASTG	1 cut(s)	343
Van91I	CCANNNNNTGG	1 cut(s)	477
VpaK11BI	GGWCC	4 cut(s)	220, 264, 377, 449
XceI	RCATGY	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.