Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0015052

Physical Location & Seq

Genomic Coordinates Forward (+)

6027922 .. 6029376

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1086800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGCTGGGCAACTGCAGCTCCGCTTCTATCACTGCCTCCTCCCAAGCTTCACTCTTCCCCTTCCTTCCTCTCTTCTTCTTCGTCTTCGATTTCGAGTGTTAGGGTTTCAAAAACCAGTAGTATACATTTTTCTTCTGCTTCGCCATTTTTGTCCTCAGAAAAGCACCAGATATGCAGAGCAGCGGGCGAATACAAATTTCCCGACCCAATTCCTGATTTCGCTGATGCCGAGACAGAAAAGTTCAGGACCCATCTGCTGAACAAGCTCTCGAAGAAAGAAATGTATGAAGACTCTGTCGAAGAAATCGTAGGCATCTGCACTGAGATATTCAGTACTTTCTTGCATACCGAGTATGGTGGTCCTGGGACACTCTTGGTGGTTCCATTCATTGACATGGCTGATACTCTAAATGAACGGGGATTACCTGGAGGCCCCCAAGCAGCTCGTGCGGCAATCAAATGGGCGCAAAATCATGTCGACAAGGACTGGAACGAATGGACTGGTGGTGATGAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009295 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009642 GO:0010468 GO:0019222 GO:0030880 GO:0032991 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050896 GO:0060255 GO:0061695 GO:0065007 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

18.9

Weight (kDa)

5.31

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10522 AT1G10522
fragaria_vesca	FvH4_4g35001
malus_domestica	MD13G1086700.v1.1 MD16G1086800.v1.1 MD16G1087000.v1.1
prunus_persica	Prupe.1G259800_v2.0.a1
pyrus_communis	pycom16g07480
rosa_chinensis	RchiOBHm_Chr4g0444531
rosa_laevigata	RLG00000005826
rosa_multiflora	Rmu_sc0003839.1_g000006 Rmu_sc0012648.1_g000008
rosa_rugosa	Rorug04G0353400
rosa_samantha	Rh4CG439800 Rh4DG420700
rosa_wichuraiana	Rw4G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	124, 480
AciI	CCGC	3 cut(s)	23, 185, 452
AcsI	RAATTY	1 cut(s)	197
AfaI	GTAC	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	111
AjnI	CCWGG	2 cut(s)	364, 427
AluBI	AGCT	4 cut(s)	20, 49, 268, 446
AluI	AGCT	4 cut(s)	20, 49, 268, 446
Alw26I	GTCTC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	433
ApeKI	GCWGC	3 cut(s)	17, 182, 443
ApoI	RAATTY	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	3 cut(s)	249, 362, 434
AsuHPI	GGTGA	1 cut(s)	521
AvaII	GGWCC	2 cut(s)	249, 362
BauI	CACGAG	1 cut(s)	447
BbsI	GAAGAC	2 cut(s)	78, 297
BbvI	GCAGC	3 cut(s)	29, 194, 455
BccI	CCATC	1 cut(s)	261
BciT130I	CCWGG	2 cut(s)	366, 429
BcoDI	GTCTC	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	4 cut(s)	18, 183, 444, 453
BlsI	GCNGC	4 cut(s)	19, 184, 445, 454
BmcAI	AGTACT	1 cut(s)	337
Bme1390I	CCNGG	2 cut(s)	366, 429
Bme18I	GGWCC	2 cut(s)	249, 362
BmgT120I	GGNCC	3 cut(s)	249, 362, 434
BmiI	GGNNCC	3 cut(s)	251, 384, 436
BmrFI	CCNGG	2 cut(s)	366, 429
BmsI	GCATC	2 cut(s)	217, 324
BpiI	GAAGAC	2 cut(s)	78, 297
BpmI	CTGGAG	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	365
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bse1I	ACTGG	3 cut(s)	117, 494, 508
BseBI	CCWGG	2 cut(s)	366, 429
BseDI	CCNNGG	1 cut(s)	365
BseMII	CTCAG	2 cut(s)	171, 315
BseNI	ACTGG	3 cut(s)	117, 494, 508
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	3 cut(s)	29, 194, 455
BseYI	CCCAGC	1 cut(s)	6
BsgI	GTGCAG	1 cut(s)	304
BshFI	GGCC	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	382
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	435
BspACI	CCGC	3 cut(s)	23, 185, 452
BspANI	GGCC	1 cut(s)	435
BspCNI	CTCAG	2 cut(s)	170, 316
BspLI	GGNNCC	3 cut(s)	251, 384, 436
BspMAI	CTGCAG	1 cut(s)	19
BsrI	ACTGG	3 cut(s)	117, 494, 508
BssECI	CCNNGG	1 cut(s)	365
BssNAI	GTATAC	1 cut(s)	125
BssSI	CACGAG	1 cut(s)	447
Bst1107I	GTATAC	1 cut(s)	125
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	2 cut(s)	366, 429
Bst6I	CTCTTC	2 cut(s)	61, 79
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	2 cut(s)	157, 324
BstHHI	GCGC	1 cut(s)	469
BstMAI	GTCTC	1 cut(s)	227
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 265, 449, 452
BstNI	CCWGG	2 cut(s)	366, 429
BstSCI	CCNGG	2 cut(s)	364, 427
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	3 cut(s)	29, 194, 455
BstV2I	GAAGAC	2 cut(s)	78, 297
BstZ17I	GTATAC	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	435
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	2 cut(s)	32, 321
Cac8I	GCNNGC	1 cut(s)	187
CfoI	GCGC	1 cut(s)	469
Cfr13I	GGNCC	3 cut(s)	249, 362, 434
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	2 cut(s)	397, 476
CviJI	RGCY	7 cut(s)	6, 20, 49, 268, 401, 435, 446
CviKI_1	RGCY	7 cut(s)	6, 20, 49, 268, 401, 435, 446
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	2 cut(s)	157, 324
Eam1104I	CTCTTC	2 cut(s)	61, 79
EarI	CTCTTC	2 cut(s)	61, 79
Eco47I	GGWCC	2 cut(s)	249, 362
EcoO109I	RGGNCCY	2 cut(s)	249, 434
EcoRII	CCWGG	2 cut(s)	364, 427
FaeI	CATG	2 cut(s)	400, 479
FaiI	YATR	7 cut(s)	125, 175, 288, 348, 357, 398, 477
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	2 cut(s)	396, 475
FauI	CCCGC	1 cut(s)	178
FblI	GTMKAC	2 cut(s)	124, 480
Fnu4HI	GCNGC	4 cut(s)	18, 183, 444, 453
Fsp4HI	GCNGC	4 cut(s)	18, 183, 444, 453
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	4 cut(s)	18, 183, 444, 453
GsaI	CCCAGC	1 cut(s)	10
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	435
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	2 cut(s)	400, 479
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	1 cut(s)	293
HphI	GGTGA	1 cut(s)	521
Hpy166II	GTNNAC	2 cut(s)	125, 481
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	4 cut(s)	203, 215, 247, 271
Hpy8I	GTNNAC	2 cut(s)	125, 481
HpyAV	CCTTC	2 cut(s)	72, 76
HpyCH4V	TGCA	4 cut(s)	17, 177, 321, 346
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 265, 449, 452
HpyF3I	CTNAG	2 cut(s)	157, 324
Hsp92II	CATG	2 cut(s)	400, 479
HspAI	GCGC	1 cut(s)	467
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	3 cut(s)	29, 194, 455
LweI	GCATC	2 cut(s)	217, 324
MboII	GAAGA	9 cut(s)	48, 66, 69, 72, 78, 126, 286, 302, 314
MluCI	AATT	2 cut(s)	197, 210
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	5 cut(s)	48, 51, 80, 166, 425
MseI	TTAA	1 cut(s)	520
MslI	CAYNNNNRTG	1 cut(s)	395
MspA1I	CMGCKG	1 cut(s)	185
MspR9I	CCNGG	2 cut(s)	366, 429
MvaI	CCWGG	2 cut(s)	366, 429
MwoI	GCNNNNNNNGC	4 cut(s)	17, 265, 449, 452
NlaIII	CATG	2 cut(s)	400, 479
NlaIV	GGNNCC	3 cut(s)	251, 384, 436
NmeAIII	GCCGAG	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 306
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	4 cut(s)	19, 184, 445, 454
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PpuMI	RGGWCCY	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	249
Psp6I	CCWGG	2 cut(s)	364, 427
PspFI	CCCAGC	1 cut(s)	6
PspGI	CCWGG	2 cut(s)	364, 427
PspN4I	GGNNCC	3 cut(s)	251, 384, 436
PspPI	GGNCC	3 cut(s)	249, 362, 434
PspPPI	RGGWCCY	1 cut(s)	249
PsrI	GAACNNNNNNTAC	2 cut(s)	408, 440
PstI	CTGCAG	1 cut(s)	19
PsyI	GACNNNGTC	1 cut(s)	296
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	395
SalI	GTCGAC	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	520
SatI	GCNGC	4 cut(s)	18, 183, 444, 453
Sau96I	GGNCC	3 cut(s)	249, 362, 434
ScaI	AGTACT	1 cut(s)	337
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	2 cut(s)	366, 429
SetI	ASST	5 cut(s)	22, 51, 270, 430, 448
SfaNI	GCATC	2 cut(s)	217, 324
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	2 cut(s)	249, 362
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	2 cut(s)	197, 210
SsiI	CCGC	3 cut(s)	23, 185, 452
StyD4I	CCNGG	2 cut(s)	364, 427
TaqI	TCGA	5 cut(s)	89, 95, 272, 300, 480
TasI	AATT	2 cut(s)	197, 210
TatI	WGTACW	1 cut(s)	335
TauI	GCSGC	1 cut(s)	455
Tru1I	TTAA	1 cut(s)	520
Tru9I	TTAA	1 cut(s)	520
TscAI	CASTG	2 cut(s)	39, 328
TseI	GCWGC	3 cut(s)	17, 182, 443
TspDTI	ATGAA	3 cut(s)	303, 379, 429
TspRI	CASTG	2 cut(s)	39, 328
Tth111I	GACNNNGTC	1 cut(s)	296
VpaK11BI	GGWCC	2 cut(s)	249, 362
XapI	RAATTY	1 cut(s)	197
XmiI	GTMKAC	2 cut(s)	124, 480
ZrmI	AGTACT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.