Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0015052

Physical Location & Seq

Genomic Coordinates Reverse (-)

67689638 .. 67691259

Gene Structure 1622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG439800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGTTGGACTGGTGTAACTCCCCTTGTATCAGCAACTCCTCCAAAGCTTCACCAATCCTCTCCCTTCTATGCTTCTCCTTCTTCTTCTTCTTACCCTTCATTCCCAACTGTTAAGGTTTCATCAAGCTTGTCACATAGATTTAGTATTAGCTACCTTTCTTCAAAGAGACAGATATGCAGAGCAGCAGCCGAGTACAGATTTCCGGACCCAATTCCAGATTTTGCTGATGCTGAGACTGAGAAGTTCAGGACCCATCTCCTGAATAAGCTATCCAAGAAAGAGGTGTATGACGACTCTGTCGATGAGGTCGTAGGGATCTGCACTGAGATATTTGGTACTTTCTTGCACACCGAGTATGGTGGTCCTGGGACGCTTTTGGTAGTTCCCTTCATTGATATGGCTGATACTCTAAACGAGCAGGGATTACCTGGAGGACCGCAAGCTGCGCGTGCTGCCATCAAATGGGCACAGAGACATGTTGATAAGGACTGGAAGGAATGGACCGGTGATGACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009295 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009642 GO:0010468 GO:0019222 GO:0030880 GO:0032991 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050896 GO:0060255 GO:0061695 GO:0065007 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

19.17

Weight (kDa)

5.7

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10522 AT1G10522
fragaria_vesca	FvH4_4g35001
malus_domestica	MD13G1086700.v1.1 MD16G1086800.v1.1 MD16G1087000.v1.1
prunus_persica	Prupe.1G259800_v2.0.a1
pyrus_communis	pycom16g07480
rosa_chinensis	RchiOBHm_Chr4g0444531
rosa_laevigata	RLG00000005826
rosa_multiflora	Rmu_sc0003839.1_g000006 Rmu_sc0012648.1_g000008
rosa_rugosa	Rorug04G0353400
rosa_samantha	Rh4CG439800 Rh4DG420700
rosa_wichuraiana	Rw4G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
AccB7I	CCANNNNNTGG	1 cut(s)	465
AccII	CGCG	1 cut(s)	451
AccIII	TCCGGA	1 cut(s)	205
AciI	CCGC	1 cut(s)	440
AclWI	GGATC	1 cut(s)	326
AfaI	GTAC	2 cut(s)	197, 340
AfiI	CCNNNNNNNGG	1 cut(s)	465
AflIII	ACRYGT	1 cut(s)	478
AgeI	ACCGGT	1 cut(s)	506
AgsI	TTSAA	1 cut(s)	165
AjnI	CCWGG	2 cut(s)	367, 430
AluBI	AGCT	5 cut(s)	49, 129, 153, 271, 446
AluI	AGCT	5 cut(s)	49, 129, 153, 271, 446
Alw26I	GTCTC	3 cut(s)	163, 230, 469
AlwI	GGATC	1 cut(s)	326
Aor13HI	TCCGGA	1 cut(s)	205
ApeKI	GCWGC	4 cut(s)	185, 188, 446, 455
AsiGI	ACCGGT	1 cut(s)	506
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	5 cut(s)	208, 252, 365, 437, 504
AsuHPI	GGTGA	2 cut(s)	44, 521
AvaII	GGWCC	5 cut(s)	208, 252, 365, 437, 504
BaeGI	GKGCMC	1 cut(s)	472
BbvI	GCAGC	4 cut(s)	197, 200, 433, 442
BccI	CCATC	2 cut(s)	264, 467
BciT130I	CCWGG	2 cut(s)	369, 432
BcoDI	GTCTC	3 cut(s)	163, 230, 469
BisI	GCNGC	4 cut(s)	186, 189, 447, 456
BlsI	GCNGC	4 cut(s)	187, 190, 448, 457
Bme1390I	CCNGG	2 cut(s)	369, 432
Bme18I	GGWCC	5 cut(s)	208, 252, 365, 437, 504
BmgT120I	GGNCC	5 cut(s)	208, 252, 365, 437, 504
BmiI	GGNNCC	2 cut(s)	210, 254
BmrFI	CCNGG	2 cut(s)	369, 432
BmsI	GCATC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	453
BsaJI	CCNNGG	1 cut(s)	368
BsaWI	WCCGGW	2 cut(s)	205, 506
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	2 cut(s)	16, 497
BseAI	TCCGGA	1 cut(s)	205
BseBI	CCWGG	2 cut(s)	369, 432
BseDI	CCNNGG	1 cut(s)	368
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMII	CTCAG	3 cut(s)	225, 231, 318
BseNI	ACTGG	2 cut(s)	16, 497
BseRI	GAGGAG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	4 cut(s)	197, 200, 433, 442
BsgI	GTGCAG	1 cut(s)	307
Bsh1236I	CGCG	1 cut(s)	451
BshTI	ACCGGT	1 cut(s)	506
BsiSI	CCGG	2 cut(s)	206, 507
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmAI	GTCTC	3 cut(s)	163, 230, 469
BsmFI	GGGAC	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp13I	TCCGGA	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	1 cut(s)	440
BspCNI	CTCAG	3 cut(s)	226, 232, 319
BspEI	TCCGGA	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	210, 254
BspPI	GGATC	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	506
BsrI	ACTGG	2 cut(s)	16, 497
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	1 cut(s)	368
BssMI	GATC	1 cut(s)	318
Bst2UI	CCWGG	2 cut(s)	369, 432
Bst4CI	ACNGT	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	444, 453
BstDEI	CTNAG	3 cut(s)	234, 240, 327
BstFNI	CGCG	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	3 cut(s)	163, 230, 469
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	3 cut(s)	448, 452, 455
BstNI	CCWGG	2 cut(s)	369, 432
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	2 cut(s)	367, 430
BstSLI	GKGCMC	1 cut(s)	472
BstUI	CGCG	1 cut(s)	451
BstV1I	GCAGC	4 cut(s)	197, 200, 433, 442
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	444, 453
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	5 cut(s)	208, 252, 365, 437, 504
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	2 cut(s)	196, 339
CspAI	ACCGGT	1 cut(s)	506
CviAII	CATG	1 cut(s)	479
CviJI	RGCY	7 cut(s)	49, 129, 153, 191, 271, 404, 446
CviKI_1	RGCY	7 cut(s)	49, 129, 153, 191, 271, 404, 446
CviQI	GTAC	2 cut(s)	196, 339
DdeI	CTNAG	3 cut(s)	234, 240, 327
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
Eco47I	GGWCC	5 cut(s)	208, 252, 365, 437, 504
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRII	CCWGG	2 cut(s)	367, 430
FaeI	CATG	1 cut(s)	482
FaiI	YATR	7 cut(s)	72, 138, 178, 291, 360, 401, 480
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	1 cut(s)	478
Fnu4HI	GCNGC	4 cut(s)	186, 189, 447, 456
Fsp4HI	GCNGC	4 cut(s)	186, 189, 447, 456
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	4 cut(s)	186, 189, 447, 456
GsuI	CTGGAG	1 cut(s)	453
HapII	CCGG	2 cut(s)	206, 507
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	1 cut(s)	482
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HindIII	AAGCTT	2 cut(s)	47, 127
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	2 cut(s)	206, 507
HphI	GGTGA	2 cut(s)	44, 521
Hpy188III	TCNNGA	4 cut(s)	206, 218, 250, 262
HpyAV	CCTTC	5 cut(s)	76, 90, 108, 400, 490
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	3 cut(s)	180, 324, 349
HpyF10VI	GCNNNNNNNGC	3 cut(s)	448, 452, 455
HpyF3I	CTNAG	3 cut(s)	234, 240, 327
Hsp92II	CATG	1 cut(s)	482
HspAI	GCGC	1 cut(s)	449
Kpn2I	TCCGGA	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	318
Lsp1109I	GCAGC	4 cut(s)	197, 200, 433, 442
LweI	GCATC	1 cut(s)	220
MaeIII	GTNAC	2 cut(s)	16, 132
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	4 cut(s)	75, 78, 81, 153
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	1 cut(s)	213
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	5 cut(s)	51, 70, 277, 301, 428
MroI	TCCGGA	1 cut(s)	205
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	398
MspI	CCGG	2 cut(s)	206, 507
MspR9I	CCNGG	2 cut(s)	369, 432
MvaI	CCWGG	2 cut(s)	369, 432
MvnI	CGCG	1 cut(s)	451
MwoI	GCNNNNNNNGC	3 cut(s)	448, 452, 455
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	1 cut(s)	482
NlaIV	GGNNCC	2 cut(s)	210, 254
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	132
NspI	RCATGY	1 cut(s)	482
PciI	ACATGT	1 cut(s)	478
PcsI	WCGNNNNNNNCGW	2 cut(s)	300, 309
PflFI	GACNNNGTC	1 cut(s)	299
PflMI	CCANNNNNTGG	1 cut(s)	465
PinAI	ACCGGT	1 cut(s)	506
PkrI	GCNGC	4 cut(s)	187, 190, 448, 457
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
PpuMI	RGGWCCY	1 cut(s)	252
PscI	ACATGT	1 cut(s)	478
Psp5II	RGGWCCY	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	367, 430
PspGI	CCWGG	2 cut(s)	367, 430
PspN4I	GGNNCC	2 cut(s)	210, 254
PspPI	GGNCC	5 cut(s)	208, 252, 365, 437, 504
PspPPI	RGGWCCY	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	318
PsyI	GACNNNGTC	1 cut(s)	299
RsaI	GTAC	2 cut(s)	197, 340
RsaNI	GTAC	2 cut(s)	196, 339
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	4 cut(s)	186, 189, 447, 456
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	5 cut(s)	208, 252, 365, 437, 504
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	2 cut(s)	369, 432
SduI	GDGCHC	1 cut(s)	472
SfaNI	GCATC	1 cut(s)	220
SinI	GGWCC	5 cut(s)	208, 252, 365, 437, 504
SmiMI	CAYNNNNRTG	1 cut(s)	398
Sse9I	AATT	1 cut(s)	213
SsiI	CCGC	1 cut(s)	440
StyD4I	CCNGG	2 cut(s)	367, 430
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	303
TasI	AATT	1 cut(s)	213
TatI	WGTACW	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	132
TseI	GCWGC	4 cut(s)	185, 188, 446, 455
Tsp45I	GTSAC	1 cut(s)	132
TspDTI	ATGAA	3 cut(s)	90, 111, 382
TspRI	CASTG	1 cut(s)	331
Tth111I	GACNNNGTC	1 cut(s)	299
Van91I	CCANNNNNTGG	1 cut(s)	465
VpaK11BI	GGWCC	5 cut(s)	208, 252, 365, 437, 504
XceI	RCATGY	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.