Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015052

Physical Location & Seq

Genomic Coordinates Forward (+)

6089400 .. 6090847

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1086700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAGCTGGGCTACTGTAACTCCGCTTCTATCACTGCCTCCTCCAAAGCTCCACCCTTCCTCCTCCTTCCTCTCTCCTTCTTCGTCGACGTCTTCGATTCCAAGGGTTCGGGTTTTAACAACCAGTAGCATACACTTTTCTTCTACTTCGCCATTTTTGTCTTTAAGAAAGCAGCAGATATGCAGAGCAGCGGGGGAATACAAATTTCCCGACCCAATTCCCGAGTTCGCTGATTCCGAGACAGAAAAGTTGAGGACCCATCTCTTGAATAAGCTCTCCAAGAAAGAAACGTATGAAGACTCGGTTGAAGAAATCGTAGGGATCTGCACTGAGATATTCAGTACTTTCTTGCACACCGAGTATGGTGGTCCGGGGACACTCCTGGTAGTTCCGTTCATTGACATGGCCGATACCCTAAATGAACGGGGATTACCTGGAGGCCCCCAAGCAGCTCGTGCGGCAATCAAATGGGCACAAAATCATGTCGACAAGGACTGGAACGCATGGACTGGCGGTGATGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009295 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009642 GO:0010468 GO:0019222 GO:0030880 GO:0032991 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050896 GO:0060255 GO:0061695 GO:0065007 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.27

Weight (kDa)

5.71

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10522 AT1G10522
fragaria_vesca	FvH4_4g35001
malus_domestica	MD13G1086700.v1.1 MD16G1086800.v1.1 MD16G1087000.v1.1
prunus_persica	Prupe.1G259800_v2.0.a1
pyrus_communis	pycom16g07480
rosa_chinensis	RchiOBHm_Chr4g0444531
rosa_laevigata	RLG00000005826
rosa_multiflora	Rmu_sc0003839.1_g000006 Rmu_sc0012648.1_g000008
rosa_rugosa	Rorug04G0353400
rosa_samantha	Rh4CG439800 Rh4DG420700
rosa_wichuraiana	Rw4G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	92
AccI	GTMKAC	2 cut(s)	86, 486
AciI	CCGC	4 cut(s)	23, 191, 458, 513
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	268, 308
AjnI	CCWGG	2 cut(s)	381, 433
AluBI	AGCT	4 cut(s)	6, 49, 274, 452
AluI	AGCT	4 cut(s)	6, 49, 274, 452
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	329
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	2 cut(s)	405, 439
ApeKI	GCWGC	3 cut(s)	172, 188, 449
ApoI	RAATTY	1 cut(s)	203
AspS9I	GGNCC	3 cut(s)	255, 368, 440
AsuC2I	CCSGG	1 cut(s)	372
AsuHPI	GGTGA	1 cut(s)	527
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	255, 368
BaeGI	GKGCMC	1 cut(s)	475
BarI	GAAGNNNNNNTAC	2 cut(s)	9, 41
BauI	CACGAG	1 cut(s)	453
BbsI	GAAGAC	2 cut(s)	84, 303
BbvI	GCAGC	3 cut(s)	184, 200, 461
BccI	CCATC	1 cut(s)	267
BciT130I	CCWGG	2 cut(s)	383, 435
BcnI	CCSGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	233
BisI	GCNGC	4 cut(s)	173, 189, 450, 459
BlsI	GCNGC	4 cut(s)	174, 190, 451, 460
BmcAI	AGTACT	1 cut(s)	343
Bme1390I	CCNGG	3 cut(s)	372, 383, 435
Bme18I	GGWCC	2 cut(s)	255, 368
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	3 cut(s)	255, 368, 440
BmiI	GGNNCC	2 cut(s)	257, 442
BmrFI	CCNGG	3 cut(s)	372, 383, 435
BpiI	GAAGAC	2 cut(s)	84, 303
BpmI	CTGGAG	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	101, 371
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 44, 74
Bse1I	ACTGG	3 cut(s)	123, 500, 514
BseBI	CCWGG	2 cut(s)	383, 435
BseDI	CCNNGG	2 cut(s)	101, 371
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	3 cut(s)	123, 500, 514
BseRI	GAGGAG	2 cut(s)	30, 52
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	3 cut(s)	184, 200, 461
BseYI	CCCAGC	1 cut(s)	6
BsgI	GTGCAG	1 cut(s)	310
BshFI	GGCC	2 cut(s)	407, 441
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	371
BslFI	GGGAC	1 cut(s)	388
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	388
BsnI	GGCC	2 cut(s)	407, 441
BsoBI	CYCGRG	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	1 cut(s)	321
BspACI	CCGC	4 cut(s)	23, 191, 458, 513
BspANI	GGCC	2 cut(s)	407, 441
BspCNI	CTCAG	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	257, 442
BspPI	GGATC	1 cut(s)	329
BsrI	ACTGG	3 cut(s)	123, 500, 514
BssECI	CCNNGG	2 cut(s)	101, 371
BssMI	GATC	1 cut(s)	321
BssNI	GRCGYC	1 cut(s)	89
BssSI	CACGAG	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	101
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	2 cut(s)	383, 435
Bst4CI	ACNGT	1 cut(s)	16
BstACI	GRCGYC	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstDEI	CTNAG	1 cut(s)	330
BstKTI	GATC	1 cut(s)	324
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	1 cut(s)	321
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 458
BstNI	CCWGG	2 cut(s)	383, 435
BstSCI	CCNGG	3 cut(s)	370, 381, 433
BstSLI	GKGCMC	1 cut(s)	475
BstV1I	GCAGC	3 cut(s)	184, 200, 461
BstV2I	GAAGAC	2 cut(s)	84, 303
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	407, 441
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	2 cut(s)	32, 327
Cfr13I	GGNCC	3 cut(s)	255, 368, 440
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	3 cut(s)	403, 482, 504
CviJI	RGCY	7 cut(s)	6, 11, 49, 274, 407, 441, 452
CviKI_1	RGCY	7 cut(s)	6, 11, 49, 274, 407, 441, 452
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
EaeI	YGGCCR	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	101
Eco47I	GGWCC	2 cut(s)	255, 368
Eco88I	CYCGRG	1 cut(s)	221
EcoO109I	RGGNCCY	2 cut(s)	255, 440
EcoRII	CCWGG	2 cut(s)	381, 433
EcoT14I	CCWWGG	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	101
FaeI	CATG	3 cut(s)	406, 485, 507
FaiI	YATR	7 cut(s)	131, 181, 294, 363, 404, 483, 505
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	3 cut(s)	402, 481, 503
FauI	CCCGC	1 cut(s)	184
FblI	GTMKAC	2 cut(s)	86, 486
Fnu4HI	GCNGC	4 cut(s)	173, 189, 450, 459
Fsp4HI	GCNGC	4 cut(s)	173, 189, 450, 459
GluI	GCNGC	4 cut(s)	173, 189, 450, 459
GsaI	CCCAGC	1 cut(s)	10
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	407, 441
HapII	CCGG	1 cut(s)	371
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	406, 485, 507
HincII	GTYRAC	2 cut(s)	87, 487
HindII	GTYRAC	2 cut(s)	87, 487
HinfI	GANTC	3 cut(s)	97, 233, 299
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	2 cut(s)	87, 487
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	3 cut(s)	209, 221, 265
Hpy8I	GTNNAC	2 cut(s)	87, 487
Hpy99I	CGWCG	2 cut(s)	88, 91
HpyAV	CCTTC	3 cut(s)	66, 76, 87
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	2 cut(s)	89, 290
HpyCH4V	TGCA	3 cut(s)	183, 327, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 458
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	2 cut(s)	89, 290
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	3 cut(s)	406, 485, 507
Kzo9I	GATC	1 cut(s)	321
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	8 cut(s)	136, 368, 384, 395, 420, 447, 481, 495
Lsp1109I	GCAGC	3 cut(s)	184, 200, 461
MaeII	ACGT	2 cut(s)	89, 290
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	5 cut(s)	72, 84, 132, 308, 320
MflI	RGATCY	1 cut(s)	321
MhlI	GDGCHC	1 cut(s)	475
MluCI	AATT	3 cut(s)	203, 216, 523
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	7 cut(s)	48, 51, 70, 73, 80, 246, 431
MseI	TTAA	3 cut(s)	116, 164, 526
MslI	CAYNNNNRTG	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	3 cut(s)	372, 383, 435
MvaI	CCWGG	2 cut(s)	383, 435
MwoI	GCNNNNNNNGC	2 cut(s)	455, 458
NciI	CCSGG	1 cut(s)	372
NdeII	GATC	1 cut(s)	321
NlaIII	CATG	3 cut(s)	406, 485, 507
NlaIV	GGNNCC	2 cut(s)	257, 442
PcsI	WCGNNNNNNNCGW	2 cut(s)	92, 234
PfeI	GAWTC	2 cut(s)	97, 233
PkrI	GCNGC	4 cut(s)	174, 190, 451, 460
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PpuMI	RGGWCCY	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	255
Psp6I	CCWGG	2 cut(s)	381, 433
PspFI	CCCAGC	1 cut(s)	6
PspGI	CCWGG	2 cut(s)	381, 433
PspN4I	GGNNCC	2 cut(s)	257, 442
PspPI	GGNCC	3 cut(s)	255, 368, 440
PspPPI	RGGWCCY	1 cut(s)	255
PsrI	GAACNNNNNNTAC	2 cut(s)	414, 446
PsuI	RGATCY	1 cut(s)	321
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
RseI	CAYNNNNRTG	1 cut(s)	401
SalI	GTCGAC	2 cut(s)	85, 485
SaqAI	TTAA	3 cut(s)	116, 164, 526
SatI	GCNGC	4 cut(s)	173, 189, 450, 459
Sau3AI	GATC	1 cut(s)	321
Sau96I	GGNCC	3 cut(s)	255, 368, 440
ScaI	AGTACT	1 cut(s)	343
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	3 cut(s)	372, 383, 435
SduI	GDGCHC	1 cut(s)	475
SetI	ASST	7 cut(s)	8, 51, 92, 276, 293, 436, 454
SgrDI	CGTCGACG	1 cut(s)	85
SinI	GGWCC	2 cut(s)	255, 368
SmiMI	CAYNNNNRTG	1 cut(s)	401
Sse9I	AATT	3 cut(s)	203, 216, 523
SsiI	CCGC	4 cut(s)	23, 191, 458, 513
StyD4I	CCNGG	3 cut(s)	370, 381, 433
StyI	CCWWGG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	2 cut(s)	92, 293
TaqI	TCGA	3 cut(s)	86, 95, 486
TasI	AATT	3 cut(s)	203, 216, 523
TatI	WGTACW	1 cut(s)	341
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	2 cut(s)	97, 233
Tru1I	TTAA	3 cut(s)	116, 164, 526
Tru9I	TTAA	3 cut(s)	116, 164, 526
TscAI	CASTG	2 cut(s)	39, 334
TseI	GCWGC	3 cut(s)	172, 188, 449
TspDTI	ATGAA	3 cut(s)	309, 385, 435
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	2 cut(s)	39, 334
VpaK11BI	GGWCC	2 cut(s)	255, 368
XapI	RAATTY	1 cut(s)	203
XmiI	GTMKAC	2 cut(s)	86, 486
ZraI	GACGTC	1 cut(s)	90
ZrmI	AGTACT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.