Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0015052

Physical Location & Seq

Genomic Coordinates Reverse (-)

62875212 .. 62876399

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG420700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAGTTGGACTGGTGTAACTCCCCTTGTATCAGCAACTCCTCCAAAGCTTCACCAATCCTCTCCCTTCTATGCTTCTCCTTCTTCTTACCCTTCATTCCCAACTGTTAAGGTTTCATCAGGCTTGTCACATAGATTTAGTATTATCTACCTTTCTTCAAAGAGACAGATATGCAGAGCAGCAGCCGAGTACAGATTTCCGGACCCAATTCCAGATTTTGCTGATGCTGAGACTGAAAAGTTCAGGACCCATCTCCTGAATAAGCTATCCAAGAAAGAGGTGTATGACGACTCTGTCGATGAGGTCGTAGGGATCTGCACTGAGATATTTGGTACTTTCTTGCACACCGAGTATGGTGGTCCTGGGACGCTTTTGGTAGTTCCCTTCATTGATATGGCTGATACTCTAAACGAGCAGGGATTACCTGGAGGACCGCAAGCTGCGCGTGCTGCCATCAAATGGGCACAGAGACATGTTGATAAGGACTGGAAGGAATGGACCGGTGATGACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009295 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009642 GO:0010468 GO:0019222 GO:0030880 GO:0032991 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050896 GO:0060255 GO:0061695 GO:0065007 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

18.99

Weight (kDa)

5.7

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10522 AT1G10522
fragaria_vesca	FvH4_4g35001
malus_domestica	MD13G1086700.v1.1 MD16G1086800.v1.1 MD16G1087000.v1.1
prunus_persica	Prupe.1G259800_v2.0.a1
pyrus_communis	pycom16g07480
rosa_chinensis	RchiOBHm_Chr4g0444531
rosa_laevigata	RLG00000005826
rosa_multiflora	Rmu_sc0003839.1_g000006 Rmu_sc0012648.1_g000008
rosa_rugosa	Rorug04G0353400
rosa_samantha	Rh4CG439800 Rh4DG420700
rosa_wichuraiana	Rw4G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
AccB7I	CCANNNNNTGG	1 cut(s)	459
AccII	CGCG	1 cut(s)	445
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	1 cut(s)	434
AclWI	GGATC	1 cut(s)	320
AfaI	GTAC	2 cut(s)	191, 334
AfiI	CCNNNNNNNGG	1 cut(s)	459
AflIII	ACRYGT	1 cut(s)	472
AgeI	ACCGGT	1 cut(s)	500
AgsI	TTSAA	1 cut(s)	159
AjnI	CCWGG	2 cut(s)	361, 424
AluBI	AGCT	3 cut(s)	49, 265, 440
AluI	AGCT	3 cut(s)	49, 265, 440
Alw26I	GTCTC	3 cut(s)	157, 224, 463
AlwI	GGATC	1 cut(s)	320
Aor13HI	TCCGGA	1 cut(s)	199
ApeKI	GCWGC	4 cut(s)	179, 182, 440, 449
AsiGI	ACCGGT	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	445
AspS9I	GGNCC	5 cut(s)	202, 246, 359, 431, 498
AsuHPI	GGTGA	2 cut(s)	44, 515
AvaII	GGWCC	5 cut(s)	202, 246, 359, 431, 498
BaeGI	GKGCMC	1 cut(s)	466
BbvI	GCAGC	4 cut(s)	191, 194, 427, 436
BccI	CCATC	2 cut(s)	258, 461
BciT130I	CCWGG	2 cut(s)	363, 426
BcoDI	GTCTC	3 cut(s)	157, 224, 463
BisI	GCNGC	4 cut(s)	180, 183, 441, 450
BlsI	GCNGC	4 cut(s)	181, 184, 442, 451
Bme1390I	CCNGG	2 cut(s)	363, 426
Bme18I	GGWCC	5 cut(s)	202, 246, 359, 431, 498
BmgT120I	GGNCC	5 cut(s)	202, 246, 359, 431, 498
BmiI	GGNNCC	2 cut(s)	204, 248
BmrFI	CCNGG	2 cut(s)	363, 426
BmsI	GCATC	1 cut(s)	214
BpmI	CTGGAG	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	362
BsaWI	WCCGGW	2 cut(s)	199, 500
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	2 cut(s)	16, 491
BseAI	TCCGGA	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	363, 426
BseDI	CCNNGG	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMII	CTCAG	2 cut(s)	219, 312
BseNI	ACTGG	2 cut(s)	16, 491
BseRI	GAGGAG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	4 cut(s)	191, 194, 427, 436
BsgI	GTGCAG	1 cut(s)	301
Bsh1236I	CGCG	1 cut(s)	445
BshTI	ACCGGT	1 cut(s)	500
BsiSI	CCGG	2 cut(s)	200, 501
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmAI	GTCTC	3 cut(s)	157, 224, 463
BsmFI	GGGAC	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	312
BspACI	CCGC	1 cut(s)	434
BspCNI	CTCAG	2 cut(s)	220, 313
BspEI	TCCGGA	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	204, 248
BspPI	GGATC	1 cut(s)	320
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	16, 491
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	363, 426
Bst4CI	ACNGT	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	438, 447
BstDEI	CTNAG	2 cut(s)	228, 321
BstFNI	CGCG	1 cut(s)	445
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	1 cut(s)	315
BstMAI	GTCTC	3 cut(s)	157, 224, 463
BstMBI	GATC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	3 cut(s)	442, 446, 449
BstNI	CCWGG	2 cut(s)	363, 426
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	2 cut(s)	361, 424
BstSLI	GKGCMC	1 cut(s)	466
BstUI	CGCG	1 cut(s)	445
BstV1I	GCAGC	4 cut(s)	191, 194, 427, 436
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	2 cut(s)	438, 447
CfoI	GCGC	1 cut(s)	445
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	5 cut(s)	202, 246, 359, 431, 498
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	2 cut(s)	190, 333
CspAI	ACCGGT	1 cut(s)	500
CviAII	CATG	1 cut(s)	473
CviJI	RGCY	6 cut(s)	49, 123, 185, 265, 398, 440
CviKI_1	RGCY	6 cut(s)	49, 123, 185, 265, 398, 440
CviQI	GTAC	2 cut(s)	190, 333
DdeI	CTNAG	2 cut(s)	228, 321
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Eco47I	GGWCC	5 cut(s)	202, 246, 359, 431, 498
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRII	CCWGG	2 cut(s)	361, 424
FaeI	CATG	1 cut(s)	476
FaiI	YATR	7 cut(s)	72, 132, 172, 285, 354, 395, 474
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	1 cut(s)	472
Fnu4HI	GCNGC	4 cut(s)	180, 183, 441, 450
Fsp4HI	GCNGC	4 cut(s)	180, 183, 441, 450
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	4 cut(s)	180, 183, 441, 450
GsuI	CTGGAG	1 cut(s)	447
HapII	CCGG	2 cut(s)	200, 501
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	1 cut(s)	476
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	2 cut(s)	200, 501
HphI	GGTGA	2 cut(s)	44, 515
Hpy188III	TCNNGA	4 cut(s)	200, 212, 244, 256
HpyAV	CCTTC	5 cut(s)	76, 90, 102, 394, 484
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	3 cut(s)	174, 318, 343
HpyF10VI	GCNNNNNNNGC	3 cut(s)	442, 446, 449
HpyF3I	CTNAG	2 cut(s)	228, 321
Hsp92II	CATG	1 cut(s)	476
HspAI	GCGC	1 cut(s)	443
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	312
Lsp1109I	GCAGC	4 cut(s)	191, 194, 427, 436
LweI	GCATC	1 cut(s)	214
MaeIII	GTNAC	2 cut(s)	16, 126
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	2 cut(s)	75, 147
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	5 cut(s)	51, 70, 271, 295, 422
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	392
MspI	CCGG	2 cut(s)	200, 501
MspR9I	CCNGG	2 cut(s)	363, 426
MvaI	CCWGG	2 cut(s)	363, 426
MvnI	CGCG	1 cut(s)	445
MwoI	GCNNNNNNNGC	3 cut(s)	442, 446, 449
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	1 cut(s)	476
NlaIV	GGNNCC	2 cut(s)	204, 248
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	126
NspI	RCATGY	1 cut(s)	476
PciI	ACATGT	1 cut(s)	472
PcsI	WCGNNNNNNNCGW	2 cut(s)	294, 303
PflFI	GACNNNGTC	1 cut(s)	293
PflMI	CCANNNNNTGG	1 cut(s)	459
PinAI	ACCGGT	1 cut(s)	500
PkrI	GCNGC	4 cut(s)	181, 184, 442, 451
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PpuMI	RGGWCCY	1 cut(s)	246
PscI	ACATGT	1 cut(s)	472
Psp5II	RGGWCCY	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	361, 424
PspGI	CCWGG	2 cut(s)	361, 424
PspN4I	GGNNCC	2 cut(s)	204, 248
PspPI	GGNCC	5 cut(s)	202, 246, 359, 431, 498
PspPPI	RGGWCCY	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	312
PsyI	GACNNNGTC	1 cut(s)	293
RsaI	GTAC	2 cut(s)	191, 334
RsaNI	GTAC	2 cut(s)	190, 333
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	4 cut(s)	180, 183, 441, 450
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	5 cut(s)	202, 246, 359, 431, 498
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	2 cut(s)	363, 426
SduI	GDGCHC	1 cut(s)	466
SetI	ASST	8 cut(s)	51, 114, 153, 267, 282, 306, 427, 442
SfaNI	GCATC	1 cut(s)	214
SinI	GGWCC	5 cut(s)	202, 246, 359, 431, 498
SmiMI	CAYNNNNRTG	1 cut(s)	392
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	1 cut(s)	434
StyD4I	CCNGG	2 cut(s)	361, 424
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	297
TasI	AATT	1 cut(s)	207
TatI	WGTACW	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	126
TseI	GCWGC	4 cut(s)	179, 182, 440, 449
Tsp45I	GTSAC	1 cut(s)	126
TspDTI	ATGAA	3 cut(s)	84, 105, 376
TspRI	CASTG	1 cut(s)	325
Tth111I	GACNNNGTC	1 cut(s)	293
Van91I	CCANNNNNTGG	1 cut(s)	459
VpaK11BI	GGWCC	5 cut(s)	202, 246, 359, 431, 498
XceI	RCATGY	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.