Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003839.1

Orthogroup ID

OG0015052

Physical Location & Seq

Genomic Coordinates Forward (+)

24930 .. 26117

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003839.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgagttggactggtgtaactccccttgtatcagcaactcctccaaagcttcaccaatcctctcccttctatgcttctccttcttcttcttacccttcattcccaactgttaaggtttcatcaagcttgtcacatagatttagtattagctacctttcttcaaagagacagatatgcagagcagcagccgagtacagatttccggacccaattccagattttgctgatgctgagactgagaagttcaggacccatctcctgaataagctatccaagaaagaggtgtatgacgactctgtcgatgaggtcgtagggatctgcactgagatatttggtactttcttgcacaccgagtatggtggtcctgggactcttttggtagttcccttcattgatatggctgatactctaaacgagcagggattacctggaggaccgcaagctgcgcgtgctgccatcaaatgggcacagagacatgttgataaggactggaaggaatggaccggtgatgacaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009295 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009642 GO:0010468 GO:0019222 GO:0030880 GO:0032991 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050896 GO:0060255 GO:0061695 GO:0065007 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.08

Weight (kDa)

5.7

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10522 AT1G10522
fragaria_vesca	FvH4_4g35001
malus_domestica	MD13G1086700.v1.1 MD16G1086800.v1.1 MD16G1087000.v1.1
prunus_persica	Prupe.1G259800_v2.0.a1
pyrus_communis	pycom16g07480
rosa_chinensis	RchiOBHm_Chr4g0444531
rosa_laevigata	RLG00000005826
rosa_multiflora	Rmu_sc0003839.1_g000006 Rmu_sc0012648.1_g000008
rosa_rugosa	Rorug04G0353400
rosa_samantha	Rh4CG439800 Rh4DG420700
rosa_wichuraiana	Rw4G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
AccB7I	CCANNNNNTGG	1 cut(s)	462
AccII	CGCG	1 cut(s)	448
AccIII	TCCGGA	1 cut(s)	202
AciI	CCGC	1 cut(s)	437
AclWI	GGATC	1 cut(s)	323
AfaI	GTAC	2 cut(s)	194, 337
AfiI	CCNNNNNNNGG	1 cut(s)	462
AflIII	ACRYGT	1 cut(s)	475
AgeI	ACCGGT	1 cut(s)	503
AgsI	TTSAA	1 cut(s)	162
AjnI	CCWGG	2 cut(s)	364, 427
AluBI	AGCT	5 cut(s)	49, 126, 150, 268, 443
AluI	AGCT	5 cut(s)	49, 126, 150, 268, 443
Alw26I	GTCTC	3 cut(s)	160, 227, 466
AlwI	GGATC	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	202
ApeKI	GCWGC	4 cut(s)	182, 185, 443, 452
AsiGI	ACCGGT	1 cut(s)	503
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	5 cut(s)	205, 249, 362, 434, 501
AsuHPI	GGTGA	2 cut(s)	44, 518
AvaII	GGWCC	5 cut(s)	205, 249, 362, 434, 501
BaeGI	GKGCMC	1 cut(s)	469
BbvI	GCAGC	4 cut(s)	194, 197, 430, 439
BccI	CCATC	2 cut(s)	261, 464
BciT130I	CCWGG	2 cut(s)	366, 429
BcoDI	GTCTC	3 cut(s)	160, 227, 466
BisI	GCNGC	4 cut(s)	183, 186, 444, 453
BlsI	GCNGC	4 cut(s)	184, 187, 445, 454
Bme1390I	CCNGG	2 cut(s)	366, 429
Bme18I	GGWCC	5 cut(s)	205, 249, 362, 434, 501
BmgT120I	GGNCC	5 cut(s)	205, 249, 362, 434, 501
BmiI	GGNNCC	2 cut(s)	207, 251
BmrFI	CCNGG	2 cut(s)	366, 429
BmsI	GCATC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	365
BsaWI	WCCGGW	2 cut(s)	202, 503
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse118I	RCCGGY	1 cut(s)	503
Bse1I	ACTGG	2 cut(s)	16, 494
BseAI	TCCGGA	1 cut(s)	202
BseBI	CCWGG	2 cut(s)	366, 429
BseDI	CCNNGG	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMII	CTCAG	3 cut(s)	222, 228, 315
BseNI	ACTGG	2 cut(s)	16, 494
BseRI	GAGGAG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	4 cut(s)	194, 197, 430, 439
BsgI	GTGCAG	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	448
BshTI	ACCGGT	1 cut(s)	503
BsiSI	CCGG	2 cut(s)	203, 504
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmAI	GTCTC	3 cut(s)	160, 227, 466
BsmFI	GGGAC	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp13I	TCCGGA	1 cut(s)	202
Bsp143I	GATC	1 cut(s)	315
BspACI	CCGC	1 cut(s)	437
BspCNI	CTCAG	3 cut(s)	223, 229, 316
BspEI	TCCGGA	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	207, 251
BspPI	GGATC	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	503
BsrI	ACTGG	2 cut(s)	16, 494
BssAI	RCCGGY	1 cut(s)	503
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	366, 429
Bst4CI	ACNGT	1 cut(s)	109
BstC8I	GCNNGC	2 cut(s)	441, 450
BstDEI	CTNAG	3 cut(s)	231, 237, 324
BstFNI	CGCG	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	1 cut(s)	318
BstMAI	GTCTC	3 cut(s)	160, 227, 466
BstMBI	GATC	1 cut(s)	315
BstMWI	GCNNNNNNNGC	3 cut(s)	445, 449, 452
BstNI	CCWGG	2 cut(s)	366, 429
BstNSI	RCATGY	1 cut(s)	479
BstSCI	CCNGG	2 cut(s)	364, 427
BstSLI	GKGCMC	1 cut(s)	469
BstUI	CGCG	1 cut(s)	448
BstV1I	GCAGC	4 cut(s)	194, 197, 430, 439
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	2 cut(s)	441, 450
CfoI	GCGC	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	503
Cfr13I	GGNCC	5 cut(s)	205, 249, 362, 434, 501
Csp6I	GTAC	2 cut(s)	193, 336
CspAI	ACCGGT	1 cut(s)	503
CviAII	CATG	1 cut(s)	476
CviJI	RGCY	7 cut(s)	49, 126, 150, 188, 268, 401, 443
CviKI_1	RGCY	7 cut(s)	49, 126, 150, 188, 268, 401, 443
CviQI	GTAC	2 cut(s)	193, 336
DdeI	CTNAG	3 cut(s)	231, 237, 324
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
Eco47I	GGWCC	5 cut(s)	205, 249, 362, 434, 501
EcoO109I	RGGNCCY	1 cut(s)	249
EcoRII	CCWGG	2 cut(s)	364, 427
FaeI	CATG	1 cut(s)	479
FaiI	YATR	7 cut(s)	72, 135, 175, 288, 357, 398, 477
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	1 cut(s)	475
Fnu4HI	GCNGC	4 cut(s)	183, 186, 444, 453
Fsp4HI	GCNGC	4 cut(s)	183, 186, 444, 453
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	4 cut(s)	183, 186, 444, 453
GsuI	CTGGAG	1 cut(s)	450
HapII	CCGG	2 cut(s)	203, 504
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	1 cut(s)	479
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HindIII	AAGCTT	2 cut(s)	47, 124
HinfI	GANTC	2 cut(s)	293, 370
HpaII	CCGG	2 cut(s)	203, 504
HphI	GGTGA	2 cut(s)	44, 518
Hpy188III	TCNNGA	4 cut(s)	203, 215, 247, 259
HpyAV	CCTTC	5 cut(s)	76, 90, 105, 397, 487
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	3 cut(s)	177, 321, 346
HpyF10VI	GCNNNNNNNGC	3 cut(s)	445, 449, 452
HpyF3I	CTNAG	3 cut(s)	231, 237, 324
Hsp92II	CATG	1 cut(s)	479
HspAI	GCGC	1 cut(s)	446
Kpn2I	TCCGGA	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	315
Lsp1109I	GCAGC	4 cut(s)	194, 197, 430, 439
LweI	GCATC	1 cut(s)	217
MaeIII	GTNAC	2 cut(s)	16, 129
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	3 cut(s)	75, 78, 150
MflI	RGATCY	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	469
MluCI	AATT	1 cut(s)	210
MlyI	GAGTC	2 cut(s)	287, 364
MnlI	CCTC	5 cut(s)	51, 70, 274, 298, 425
MroI	TCCGGA	1 cut(s)	202
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	395
MspI	CCGG	2 cut(s)	203, 504
MspR9I	CCNGG	2 cut(s)	366, 429
MvaI	CCWGG	2 cut(s)	366, 429
MvnI	CGCG	1 cut(s)	448
MwoI	GCNNNNNNNGC	3 cut(s)	445, 449, 452
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	1 cut(s)	479
NlaIV	GGNNCC	2 cut(s)	207, 251
NmeAIII	GCCGAG	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	129
NspI	RCATGY	1 cut(s)	479
PciI	ACATGT	1 cut(s)	475
PcsI	WCGNNNNNNNCGW	2 cut(s)	297, 306
PflFI	GACNNNGTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	462
PinAI	ACCGGT	1 cut(s)	503
PkrI	GCNGC	4 cut(s)	184, 187, 445, 454
PleI	GAGTC	2 cut(s)	287, 364
PpsI	GAGTC	2 cut(s)	287, 364
PpuMI	RGGWCCY	1 cut(s)	249
PscI	ACATGT	1 cut(s)	475
Psp5II	RGGWCCY	1 cut(s)	249
Psp6I	CCWGG	2 cut(s)	364, 427
PspGI	CCWGG	2 cut(s)	364, 427
PspN4I	GGNNCC	2 cut(s)	207, 251
PspPI	GGNCC	5 cut(s)	205, 249, 362, 434, 501
PspPPI	RGGWCCY	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	315
PsyI	GACNNNGTC	1 cut(s)	296
RsaI	GTAC	2 cut(s)	194, 337
RsaNI	GTAC	2 cut(s)	193, 336
RseI	CAYNNNNRTG	1 cut(s)	395
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	4 cut(s)	183, 186, 444, 453
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	5 cut(s)	205, 249, 362, 434, 501
SchI	GAGTC	2 cut(s)	287, 364
ScrFI	CCNGG	2 cut(s)	366, 429
SduI	GDGCHC	1 cut(s)	469
SfaNI	GCATC	1 cut(s)	217
SinI	GGWCC	5 cut(s)	205, 249, 362, 434, 501
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	1 cut(s)	437
StyD4I	CCNGG	2 cut(s)	364, 427
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	300
TasI	AATT	1 cut(s)	210
TatI	WGTACW	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	129
TseI	GCWGC	4 cut(s)	182, 185, 443, 452
Tsp45I	GTSAC	1 cut(s)	129
TspDTI	ATGAA	3 cut(s)	87, 108, 379
TspRI	CASTG	1 cut(s)	328
Tth111I	GACNNNGTC	1 cut(s)	296
Van91I	CCANNNNNTGG	1 cut(s)	462
VpaK11BI	GGWCC	5 cut(s)	205, 249, 362, 434, 501
XceI	RCATGY	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.