Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015052

Physical Location & Seq

Genomic Coordinates Reverse (-)

26905460 .. 26907085

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G259800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAGCTGGAGTAGTGTAGCTCCGCTTCTATCTGTAACTCCTTCAAAACTTGACTCATCCTCTTCCTTCCTGCCTTCTTCTTCCTCTTCGGTTTCAAGTGTTAGGGTTTCGTTAAGCTTGTCATGGAGATTTAGACCAACTAGTATCAGATACCTTTCTTCATCTTCGTCATCTTTGTCGTTAAGAAAGCAAATATGCAGAGCAGCAGAATACAAATTTCCCGACCCAATTCCTGAATTTGCTGATGAAGAGACAGAAAAGTTTAGGACCCATCTCCTGAATAAGCTTTCCAAGAAAGATTTGTATGAAGACTCTGTTGAAGAGGTCGTTGGGATCTGCACTGAGATATTTAGTACTTTCTTGCACACCGAGTATGGTGGTCCTGGGACACTCTTGGTAGTTCCTTTCATTGATATGGCTGATACTCTGAATGAGCGTGGATTACCTGGTGGACAGCAAGCTGCGCGTGCAGCAATCAAATGGGCACAAAATCATGTTGACAAGGACTGGAATGAATGGACTGGTGACAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009295 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009642 GO:0010468 GO:0019222 GO:0030880 GO:0032991 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050896 GO:0060255 GO:0061695 GO:0065007 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.81

Weight (kDa)

5.64

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10522 AT1G10522
fragaria_vesca	FvH4_4g35001
malus_domestica	MD13G1086700.v1.1 MD16G1086800.v1.1 MD16G1087000.v1.1
prunus_persica	Prupe.1G259800_v2.0.a1
pyrus_communis	pycom16g07480
rosa_chinensis	RchiOBHm_Chr4g0444531
rosa_laevigata	RLG00000005826
rosa_multiflora	Rmu_sc0003839.1_g000006 Rmu_sc0012648.1_g000008
rosa_rugosa	Rorug04G0353400
rosa_samantha	Rh4CG439800 Rh4DG420700
rosa_wichuraiana	Rw4G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	466
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	2 cut(s)	215, 236
AfaI	GTAC	1 cut(s)	355
AgsI	TTSAA	3 cut(s)	45, 96, 320
AhlI	ACTAGT	1 cut(s)	140
AjnI	CCWGG	2 cut(s)	382, 445
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
AluBI	AGCT	5 cut(s)	6, 20, 117, 286, 461
AluI	AGCT	5 cut(s)	6, 20, 117, 286, 461
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	341
ApeKI	GCWGC	3 cut(s)	203, 461, 470
ApoI	RAATTY	2 cut(s)	215, 236
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	2 cut(s)	267, 380
AsuHPI	GGTGA	1 cut(s)	536
AvaII	GGWCC	2 cut(s)	267, 380
BaeGI	GKGCMC	1 cut(s)	487
BarI	GAAGNNNNNNTAC	2 cut(s)	9, 41
BbsI	GAAGAC	1 cut(s)	315
BbvI	GCAGC	3 cut(s)	215, 448, 482
BccI	CCATC	1 cut(s)	279
BciT130I	CCWGG	2 cut(s)	384, 447
BcoDI	GTCTC	1 cut(s)	245
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	1 cut(s)	141
BisI	GCNGC	3 cut(s)	204, 462, 471
BlsI	GCNGC	3 cut(s)	205, 463, 472
BmcAI	AGTACT	1 cut(s)	355
Bme1390I	CCNGG	2 cut(s)	384, 447
Bme18I	GGWCC	2 cut(s)	267, 380
BmgT120I	GGNCC	2 cut(s)	267, 380
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	2 cut(s)	384, 447
BpiI	GAAGAC	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	383
Bse1I	ACTGG	2 cut(s)	512, 526
BseBI	CCWGG	2 cut(s)	384, 447
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	1 cut(s)	56
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	2 cut(s)	512, 526
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	3 cut(s)	215, 448, 482
BsgI	GTGCAG	2 cut(s)	322, 489
Bsh1236I	CGCG	1 cut(s)	466
BslFI	GGGAC	1 cut(s)	400
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	1 cut(s)	333
BspACI	CCGC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	341
BsrI	ACTGG	2 cut(s)	512, 526
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	1 cut(s)	333
Bst2UI	CCWGG	2 cut(s)	384, 447
Bst6I	CTCTTC	4 cut(s)	67, 91, 243, 315
BstC8I	GCNNGC	2 cut(s)	459, 468
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	56
BstFNI	CGCG	1 cut(s)	466
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	1 cut(s)	336
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	1 cut(s)	333
BstMWI	GCNNNNNNNGC	3 cut(s)	463, 467, 470
BstNI	CCWGG	2 cut(s)	384, 447
BstSCI	CCNGG	2 cut(s)	382, 445
BstSLI	GKGCMC	1 cut(s)	487
BstUI	CGCG	1 cut(s)	466
BstV1I	GCAGC	3 cut(s)	215, 448, 482
BstV2I	GAAGAC	1 cut(s)	315
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	2 cut(s)	459, 468
CfoI	GCGC	1 cut(s)	466
Cfr13I	GGNCC	2 cut(s)	267, 380
CsiI	ACCWGGT	1 cut(s)	445
Csp6I	GTAC	1 cut(s)	354
CviAII	CATG	2 cut(s)	123, 494
CviJI	RGCY	6 cut(s)	6, 20, 117, 286, 419, 461
CviKI_1	RGCY	6 cut(s)	6, 20, 117, 286, 419, 461
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	1 cut(s)	335
DpnII	GATC	1 cut(s)	333
Eam1104I	CTCTTC	4 cut(s)	67, 91, 243, 315
EarI	CTCTTC	4 cut(s)	67, 91, 243, 315
Eco47I	GGWCC	2 cut(s)	267, 380
EcoO109I	RGGNCCY	1 cut(s)	267
EcoRII	CCWGG	2 cut(s)	382, 445
FaeI	CATG	2 cut(s)	126, 497
FaiI	YATR	6 cut(s)	124, 196, 306, 375, 416, 495
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	2 cut(s)	122, 493
Fnu4HI	GCNGC	3 cut(s)	204, 462, 471
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	3 cut(s)	204, 462, 471
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	3 cut(s)	204, 462, 471
GsuI	CTGGAG	1 cut(s)	28
HhaI	GCGC	1 cut(s)	466
Hin1II	CATG	2 cut(s)	126, 497
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HindIII	AAGCTT	2 cut(s)	115, 284
HinfI	GANTC	2 cut(s)	53, 311
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	2 cut(s)	452, 499
Hpy188I	TCNGA	2 cut(s)	149, 429
Hpy188III	TCNNGA	3 cut(s)	221, 233, 277
Hpy8I	GTNNAC	2 cut(s)	452, 499
HpyAV	CCTTC	3 cut(s)	51, 76, 84
HpyCH4V	TGCA	4 cut(s)	198, 339, 364, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	463, 467, 470
HpyF3I	CTNAG	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	126, 497
HspAI	GCGC	1 cut(s)	464
Kzo9I	GATC	1 cut(s)	333
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	9 cut(s)	83, 246, 290, 369, 396, 432, 459, 493, 507
Lsp1109I	GCAGC	3 cut(s)	215, 448, 482
MabI	ACCWGGT	1 cut(s)	445
MaeI	CTAG	1 cut(s)	141
MaeIII	GTNAC	2 cut(s)	34, 524
MalI	GATC	1 cut(s)	335
MboI	GATC	1 cut(s)	333
MboII	GAAGA	9 cut(s)	54, 69, 72, 78, 150, 156, 260, 320, 332
MflI	RGATCY	1 cut(s)	333
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	4 cut(s)	215, 228, 236, 532
MlyI	GAGTC	2 cut(s)	47, 305
MnlI	CCTC	3 cut(s)	70, 94, 316
MseI	TTAA	3 cut(s)	113, 182, 535
MslI	CAYNNNNRTG	1 cut(s)	413
MspR9I	CCNGG	2 cut(s)	384, 447
MvaI	CCWGG	2 cut(s)	384, 447
MvnI	CGCG	1 cut(s)	466
MwoI	GCNNNNNNNGC	3 cut(s)	463, 467, 470
NdeII	GATC	1 cut(s)	333
NlaIII	CATG	2 cut(s)	126, 497
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	524
PkrI	GCNGC	3 cut(s)	205, 463, 472
PleI	GAGTC	2 cut(s)	47, 305
PpsI	GAGTC	2 cut(s)	47, 305
PpuMI	RGGWCCY	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	382, 445
PspGI	CCWGG	2 cut(s)	382, 445
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	2 cut(s)	267, 380
PspPPI	RGGWCCY	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	333
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
RseI	CAYNNNNRTG	1 cut(s)	413
SaqAI	TTAA	3 cut(s)	113, 182, 535
SatI	GCNGC	3 cut(s)	204, 462, 471
Sau3AI	GATC	1 cut(s)	333
Sau96I	GGNCC	2 cut(s)	267, 380
ScaI	AGTACT	1 cut(s)	355
SchI	GAGTC	2 cut(s)	47, 305
ScrFI	CCNGG	2 cut(s)	384, 447
SduI	GDGCHC	1 cut(s)	487
SetI	ASST	8 cut(s)	8, 22, 119, 156, 288, 327, 448, 463
SexAI	ACCWGGT	1 cut(s)	445
SinI	GGWCC	2 cut(s)	267, 380
SmiMI	CAYNNNNRTG	1 cut(s)	413
SpeI	ACTAGT	1 cut(s)	140
Sse9I	AATT	4 cut(s)	215, 228, 236, 532
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	382, 445
TasI	AATT	4 cut(s)	215, 228, 236, 532
TatI	WGTACW	1 cut(s)	353
Tru1I	TTAA	3 cut(s)	113, 182, 535
Tru9I	TTAA	3 cut(s)	113, 182, 535
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	3 cut(s)	203, 461, 470
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	5 cut(s)	150, 261, 321, 397, 528
TspRI	CASTG	1 cut(s)	346
VpaK11BI	GGWCC	2 cut(s)	267, 380
XapI	RAATTY	2 cut(s)	215, 236
XspI	CTAG	1 cut(s)	141
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.