Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015052

Physical Location & Seq

Genomic Coordinates Reverse (-)

32487263 .. 32488782

Gene Structure 1520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35001.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCGTTGGACTAGTGCAACTCCCCTTGTATCTGCAACTCCTCCAAAGCTTCACCAAACCTCTCCCTTCTATGCTTCTCCTTTTTCTTCTTCTTACTCTTCATTTCCAACTGTTAAAGTTTCATCTAGCTTGTCACAGAGGTTTAGCATTAGGTCACTTTCTTCAACGAGACAGATATGCAGAGCAGCAGCCGAGTACAGATTCCCGGACCCAATTCCTGGGTTTGCTGATGCTGAGACAGAGAAGTTCAGGACCCATCTCCTGAATAAGCTTTCCAAGAAAGATTTATATGAAGACTCTGTTGAAGAGGTTGTAGGGATCTGCACTGAGATATTTGGTACTTTCATGCACACCGAGTATGGTGGTCCTGGAACGCTCTTGGTAGTTCCCTTCATTGATATGGCTGATACTTTAAACGAGCAAGGATTACCTGGAGGGCCGCAAGCTGCGCGTGCTGCCATCAAATGGGCACAGAATCATGTTGACAAGGACTGGAAGGAATGGACTGGTGATGACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009295 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009642 GO:0010468 GO:0019222 GO:0030880 GO:0032991 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050896 GO:0060255 GO:0061695 GO:0065007 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.21

Weight (kDa)

5.79

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10522 AT1G10522
fragaria_vesca	FvH4_4g35001
malus_domestica	MD13G1086700.v1.1 MD16G1086800.v1.1 MD16G1087000.v1.1
prunus_persica	Prupe.1G259800_v2.0.a1
pyrus_communis	pycom16g07480
rosa_chinensis	RchiOBHm_Chr4g0444531
rosa_laevigata	RLG00000005826
rosa_multiflora	Rmu_sc0003839.1_g000006 Rmu_sc0012648.1_g000008
rosa_rugosa	Rorug04G0353400
rosa_samantha	Rh4CG439800 Rh4DG420700
rosa_wichuraiana	Rw4G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	218, 465
AccII	CGCG	1 cut(s)	451
AciI	CCGC	1 cut(s)	440
AclWI	GGATC	1 cut(s)	326
AfaI	GTAC	2 cut(s)	197, 340
AfiI	CCNNNNNNNGG	2 cut(s)	218, 465
AgsI	TTSAA	2 cut(s)	165, 305
AhlI	ACTAGT	1 cut(s)	11
AjnI	CCWGG	3 cut(s)	217, 367, 430
AluBI	AGCT	4 cut(s)	49, 129, 271, 446
AluI	AGCT	4 cut(s)	49, 129, 271, 446
Alw26I	GTCTC	2 cut(s)	163, 230
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	1 cut(s)	437
ApeKI	GCWGC	4 cut(s)	185, 188, 446, 455
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	4 cut(s)	208, 252, 365, 437
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	44, 521
AvaII	GGWCC	3 cut(s)	208, 252, 365
BaeGI	GKGCMC	1 cut(s)	472
BbsI	GAAGAC	1 cut(s)	300
BbvI	GCAGC	4 cut(s)	197, 200, 433, 442
BccI	CCATC	2 cut(s)	264, 467
BciT130I	CCWGG	3 cut(s)	219, 369, 432
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	163, 230
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	2 cut(s)	12, 126
BisI	GCNGC	5 cut(s)	186, 189, 440, 447, 456
BlsI	GCNGC	5 cut(s)	187, 190, 441, 448, 457
Bme1390I	CCNGG	4 cut(s)	206, 219, 369, 432
Bme18I	GGWCC	3 cut(s)	208, 252, 365
BmgT120I	GGNCC	4 cut(s)	208, 252, 365, 437
BmiI	GGNNCC	2 cut(s)	210, 254
BmrFI	CCNGG	4 cut(s)	206, 219, 369, 432
BmsI	GCATC	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	453
BpuMI	CCSGG	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 465
Bse1I	ACTGG	2 cut(s)	497, 511
BseBI	CCWGG	3 cut(s)	219, 369, 432
BseDI	CCNNGG	1 cut(s)	218
BseLI	CCNNNNNNNGG	2 cut(s)	218, 465
BseMII	CTCAG	2 cut(s)	225, 318
BseNI	ACTGG	2 cut(s)	497, 511
BseRI	GAGGAG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	4 cut(s)	197, 200, 433, 442
BsgI	GTGCAG	1 cut(s)	307
Bsh1236I	CGCG	1 cut(s)	451
BshFI	GGCC	1 cut(s)	439
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	218, 465
BsmAI	GTCTC	2 cut(s)	163, 230
BsnI	GGCC	1 cut(s)	439
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	1 cut(s)	440
BspANI	GGCC	1 cut(s)	439
BspCNI	CTCAG	2 cut(s)	226, 319
BspFNI	CGCG	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	210, 254
BspPI	GGATC	1 cut(s)	326
BsrI	ACTGG	2 cut(s)	497, 511
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	1 cut(s)	318
Bst2UI	CCWGG	3 cut(s)	219, 369, 432
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	2 cut(s)	103, 300
BstC8I	GCNNGC	2 cut(s)	444, 453
BstDEI	CTNAG	2 cut(s)	234, 327
BstFNI	CGCG	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	2 cut(s)	163, 230
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	3 cut(s)	448, 452, 455
BstNI	CCWGG	3 cut(s)	219, 369, 432
BstSCI	CCNGG	4 cut(s)	204, 217, 367, 430
BstSLI	GKGCMC	1 cut(s)	472
BstUI	CGCG	1 cut(s)	451
BstV1I	GCAGC	4 cut(s)	197, 200, 433, 442
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	444, 453
CfoI	GCGC	1 cut(s)	451
Cfr13I	GGNCC	4 cut(s)	208, 252, 365, 437
Csp6I	GTAC	2 cut(s)	196, 339
CviAII	CATG	2 cut(s)	346, 479
CviJI	RGCY	7 cut(s)	49, 129, 191, 271, 404, 439, 446
CviKI_1	RGCY	7 cut(s)	49, 129, 191, 271, 404, 439, 446
CviQI	GTAC	2 cut(s)	196, 339
DdeI	CTNAG	2 cut(s)	234, 327
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
DraI	TTTAAA	1 cut(s)	414
Eam1104I	CTCTTC	2 cut(s)	103, 300
EarI	CTCTTC	2 cut(s)	103, 300
Eco47I	GGWCC	3 cut(s)	208, 252, 365
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRII	CCWGG	3 cut(s)	217, 367, 430
FaeI	CATG	2 cut(s)	349, 482
FaiI	YATR	8 cut(s)	72, 178, 289, 291, 347, 360, 401, 480
FatI	CATG	2 cut(s)	345, 478
Fnu4HI	GCNGC	5 cut(s)	186, 189, 440, 447, 456
Fsp4HI	GCNGC	5 cut(s)	186, 189, 440, 447, 456
FspBI	CTAG	2 cut(s)	12, 126
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	5 cut(s)	186, 189, 440, 447, 456
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	439
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	2 cut(s)	349, 482
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HindIII	AAGCTT	2 cut(s)	47, 269
HinfI	GANTC	3 cut(s)	201, 296, 475
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	2 cut(s)	44, 521
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188III	TCNNGA	2 cut(s)	250, 262
Hpy8I	GTNNAC	1 cut(s)	484
HpyAV	CCTTC	3 cut(s)	76, 400, 490
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	5 cut(s)	17, 35, 180, 324, 349
HpyF10VI	GCNNNNNNNGC	3 cut(s)	448, 452, 455
HpyF3I	CTNAG	2 cut(s)	234, 327
Hsp92II	CATG	2 cut(s)	349, 482
HspAI	GCGC	1 cut(s)	449
Kzo9I	GATC	1 cut(s)	318
Lsp1109I	GCAGC	4 cut(s)	197, 200, 433, 442
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	12, 126
MaeIII	GTNAC	2 cut(s)	132, 153
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	6 cut(s)	78, 81, 90, 153, 305, 317
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	1 cut(s)	213
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	5 cut(s)	51, 70, 132, 301, 428
MseI	TTAA	2 cut(s)	114, 413
MslI	CAYNNNNRTG	1 cut(s)	398
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	4 cut(s)	206, 219, 369, 432
MvaI	CCWGG	3 cut(s)	219, 369, 432
MvnI	CGCG	1 cut(s)	451
MwoI	GCNNNNNNNGC	3 cut(s)	448, 452, 455
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	2 cut(s)	349, 482
NlaIV	GGNNCC	2 cut(s)	210, 254
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	132, 153
PfeI	GAWTC	2 cut(s)	201, 475
PflMI	CCANNNNNTGG	2 cut(s)	218, 465
PfoI	TCCNGGA	2 cut(s)	204, 367
PkrI	GCNGC	5 cut(s)	187, 190, 441, 448, 457
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
PpuMI	RGGWCCY	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	252
Psp6I	CCWGG	3 cut(s)	217, 367, 430
PspGI	CCWGG	3 cut(s)	217, 367, 430
PspN4I	GGNNCC	2 cut(s)	210, 254
PspPI	GGNCC	4 cut(s)	208, 252, 365, 437
PspPPI	RGGWCCY	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	318
RsaI	GTAC	2 cut(s)	197, 340
RsaNI	GTAC	2 cut(s)	196, 339
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	114, 413
SatI	GCNGC	5 cut(s)	186, 189, 440, 447, 456
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	4 cut(s)	208, 252, 365, 437
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	4 cut(s)	206, 219, 369, 432
SduI	GDGCHC	1 cut(s)	472
SetI	ASST	9 cut(s)	51, 62, 131, 143, 155, 273, 312, 433, 448
SfaNI	GCATC	1 cut(s)	220
SinI	GGWCC	3 cut(s)	208, 252, 365
SmiMI	CAYNNNNRTG	1 cut(s)	398
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	1 cut(s)	213
SsiI	CCGC	1 cut(s)	440
SspMI	CTAG	2 cut(s)	12, 126
StyD4I	CCNGG	4 cut(s)	204, 217, 367, 430
TaaI	ACNGT	1 cut(s)	112
TasI	AATT	1 cut(s)	213
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	442
TfiI	GAWTC	2 cut(s)	201, 475
Tru1I	TTAA	2 cut(s)	114, 413
Tru9I	TTAA	2 cut(s)	114, 413
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	2 cut(s)	132, 153
TseI	GCWGC	4 cut(s)	185, 188, 446, 455
Tsp45I	GTSAC	2 cut(s)	132, 153
TspDTI	ATGAA	5 cut(s)	90, 111, 306, 334, 382
TspRI	CASTG	1 cut(s)	331
Van91I	CCANNNNNTGG	2 cut(s)	218, 465
VpaK11BI	GGWCC	3 cut(s)	208, 252, 365
XspI	CTAG	2 cut(s)	12, 126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.