Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0015052

Physical Location & Seq

Genomic Coordinates Forward (+)

6030213 .. 6031270

Gene Structure 1058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1087000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGCGACTGATATTCAGTACTTTCTTGCATACCGAGTATGGTGGTCCTGGGACACTCTTGGTGGTTCCGTTCATTGACATGGCTGATACTCTAAATGAACGGGGATTACCTGGAGGCCCCCAAGCAGCTCGTGCGGCAATCAAATGGGCGCAAAATCATGTCGACAAGGACTGGAACGAATGGACTGGTGGTGATGAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009295 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009642 GO:0010468 GO:0019222 GO:0030880 GO:0032991 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050896 GO:0060255 GO:0061695 GO:0065007 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

68

Amino Acids

7.4

Weight (kDa)

4.78

Isoelectric Point (pI)

15.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10522 AT1G10522
fragaria_vesca	FvH4_4g35001
malus_domestica	MD13G1086700.v1.1 MD16G1086800.v1.1 MD16G1087000.v1.1
prunus_persica	Prupe.1G259800_v2.0.a1
pyrus_communis	pycom16g07480
rosa_chinensis	RchiOBHm_Chr4g0444531
rosa_laevigata	RLG00000005826
rosa_multiflora	Rmu_sc0003839.1_g000006 Rmu_sc0012648.1_g000008
rosa_rugosa	Rorug04G0353400
rosa_samantha	Rh4CG439800 Rh4DG420700
rosa_wichuraiana	Rw4G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	1 cut(s)	134
AfaI	GTAC	1 cut(s)	19
AjnI	CCWGG	2 cut(s)	46, 109
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	44, 116
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	44
BauI	CACGAG	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	137
BciT130I	CCWGG	2 cut(s)	48, 111
BisI	GCNGC	2 cut(s)	126, 135
BlsI	GCNGC	2 cut(s)	127, 136
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	2 cut(s)	48, 111
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	44, 116
BmiI	GGNNCC	2 cut(s)	66, 118
BmrFI	CCNGG	2 cut(s)	48, 111
BpmI	CTGGAG	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	176, 190
BseBI	CCWGG	2 cut(s)	48, 111
BseDI	CCNNGG	1 cut(s)	47
BseNI	ACTGG	2 cut(s)	176, 190
BseXI	GCAGC	1 cut(s)	137
BshFI	GGCC	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	117
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	66, 118
BsrI	ACTGG	2 cut(s)	176, 190
BssECI	CCNNGG	1 cut(s)	47
BssSI	CACGAG	1 cut(s)	129
Bst2BI	CACGAG	1 cut(s)	129
Bst2UI	CCWGG	2 cut(s)	48, 111
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 134
BstNI	CCWGG	2 cut(s)	48, 111
BstSCI	CCNGG	2 cut(s)	46, 109
BstV1I	GCAGC	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	117
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	2 cut(s)	44, 116
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	2 cut(s)	79, 158
CviJI	RGCY	3 cut(s)	83, 117, 128
CviKI_1	RGCY	3 cut(s)	83, 117, 128
CviQI	GTAC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	46, 109
FaeI	CATG	2 cut(s)	82, 161
FaiI	YATR	4 cut(s)	30, 39, 80, 159
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	2 cut(s)	78, 157
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	126, 135
Fsp4HI	GCNGC	2 cut(s)	126, 135
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	2 cut(s)	126, 135
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	117
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	2 cut(s)	82, 161
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	163
HpyCH4V	TGCA	1 cut(s)	28
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 134
Hsp92II	CATG	2 cut(s)	82, 161
HspAI	GCGC	1 cut(s)	149
LpnPI	CCDG	6 cut(s)	33, 60, 96, 123, 157, 171
Lsp1109I	GCAGC	1 cut(s)	137
MnlI	CCTC	1 cut(s)	107
MseI	TTAA	1 cut(s)	202
MslI	CAYNNNNRTG	1 cut(s)	77
MspR9I	CCNGG	2 cut(s)	48, 111
MvaI	CCWGG	2 cut(s)	48, 111
MwoI	GCNNNNNNNGC	2 cut(s)	131, 134
NlaIII	CATG	2 cut(s)	82, 161
NlaIV	GGNNCC	2 cut(s)	66, 118
PkrI	GCNGC	2 cut(s)	127, 136
Psp6I	CCWGG	2 cut(s)	46, 109
PspGI	CCWGG	2 cut(s)	46, 109
PspN4I	GGNNCC	2 cut(s)	66, 118
PspPI	GGNCC	2 cut(s)	44, 116
PsrI	GAACNNNNNNTAC	2 cut(s)	90, 122
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	77
SalI	GTCGAC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	202
SatI	GCNGC	2 cut(s)	126, 135
Sau96I	GGNCC	2 cut(s)	44, 116
ScaI	AGTACT	1 cut(s)	19
ScrFI	CCNGG	2 cut(s)	48, 111
SetI	ASST	2 cut(s)	112, 130
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	77
SsiI	CCGC	1 cut(s)	134
StyD4I	CCNGG	2 cut(s)	46, 109
TaqI	TCGA	1 cut(s)	162
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	202
Tru9I	TTAA	1 cut(s)	202
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	61, 111
TspGWI	ACGGA	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	162
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.