AT1G10650

Zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012297
Physical Location & Seq
Reverse (-)
3523986 .. 3526531
2546 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10650.2

Sequence Viewer

Length: 1020 bp
ATGTTAAGTGGAAACAATGGAAACACTGCACCACCGGTTTTCATGAACGAGAACCAGTTGCAATACCAGACAAACCTACGATCGAATCAGCTTCACTTGCTCGGAAACATGGGAGGTGGATGCACTGTTGATCCAGTAAACTACTTTGCTAACGATAACCTCGTTCCAATGATCCGCCCTAACAAAAGAGGAAGGGAAGCCGAAAGCATTAGTAACAACATCCAAAGACAACAGCAGAAGCTTCAAATGTCTTTGAACTATAATTATAACAACACTAGTGTTCGAGAAGAAGTGCCTAAAGAGAATCTAGTCTCAACTGGTCTGAGACTATCTTATGACGACGATGAACACAATTCTTCAGTGACTTCTGCTAGTGGTAGCATTTTAGCTGCTTCTCCAATCTTTCAGTCACTCGATGATAGTCTTCGGATTGATCTCCATAGACAAAAAGATGAGTTTGACCAGTTCATCAAGATCCAGGCAGCTCAAATGGCGAAAGGTGTGAGGGATATGAAACAGAGACACATCGCGTCTTTTCTCACAACATTAGAGAAAGGAGTGAGCAAGAAGCTTCAAGAGAAAGATCACGAGATCAATGATATGAACAAGAAGAATAAAGAGCTTGTGGAGCGGATAAAGCAAGTGGCAATGGAAGCTCAGAATTGGCACTACAGAGCAAAGTACAATGAGTCTGTGGTTAATGTCTTAAAGGCAAATCTCCAACAAGCAATGTCACACAACAACAGTGTGATAGCTGCTGCAGATCAAGGCAAAGAAGGTTTTGGAGACAGCGAAATAGATGATGCAGCTTCATCATACATCGATCCAAACAACAATAACAACAACAACATGGGGATTCATCAGAGGATGAGATGCAAAATGTGCAACGTCAAGGAAGTATCGGTGTTGATAGTGCCATGTCGGCACTTGAGTTTGTGTAAAGAATGTGATGTATTCACTAAGATTTGTCCTGTATGCAAGTCTTTGAAAAGTTCTTGCGTCCAAGTCTTCTTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001817 GO:0001959 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004842 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007166 GO:0007249 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010466 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010803 GO:0010939 GO:0010941 GO:0010951 GO:0010955 GO:0012501 GO:0016567 GO:0016579 GO:0016740 GO:0019221 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023056 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0031325 GO:0031347 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0033209 GO:0034097 GO:0034121 GO:0034612 GO:0035556 GO:0036211 GO:0038061 GO:0039531 GO:0039535 GO:0042221 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043122 GO:0043123 GO:0043154 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043281 GO:0043412 GO:0043900 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045861 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050688 GO:0050727 GO:0050776 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060544 GO:0060546 GO:0060547 GO:0060548 GO:0060759 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070013 GO:0070424 GO:0070613 GO:0070646 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071356 GO:0071704 GO:0080090 GO:0080134 GO:0097340 GO:0097341 GO:0098772 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:1903317 GO:1903318 GO:1903320 GO:1903322 GO:1990001 GO:2000116 GO:2000117
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

339

Amino Acids

38.25

Weight (kDa)

8.02

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 233 - 273 1.2e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10650 AT1G10650
fragaria_vesca FvH4_4g32940
malus_domestica MD13G1095100.v1.1 MD16G1096200.v1.1
prunus_persica Prupe.1G250200_v2.0.a1
pyrus_communis pycom13g08290 pycom16g08210
rosa_chinensis RchiOBHm_Chr4g0441971
rosa_laevigata RLG00000006054
rosa_multiflora Rmu_sc0002501.1_g000024 Rmu_sc0011990.1_g000003
rosa_roxburghii Rroxscaffold_5G00382840
rosa_rugosa Rorug04G0337400
rosa_samantha Rh4AG389400 Rh4BG402800 Rh4CG418000 Rh4DG395900
rosa_wichuraiana Rw4G033620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 267
AccBSI CCGCTC 1 cut(s) 631
AccII CGCG 1 cut(s) 530
AciI CCGC 2 cut(s) 175, 631
AclWI GGATC 4 cut(s) 125, 166, 469, 818
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 1 cut(s) 683
AgeI ACCGGT 1 cut(s) 34
AgsI TTSAA 4 cut(s) 245, 256, 575, 988
AhlI ACTAGT 1 cut(s) 275
AjnI CCWGG 1 cut(s) 477
AluBI AGCT 9 cut(s) 91, 241, 389, 485, 571, 622, 656, 755, 809
AluI AGCT 9 cut(s) 91, 241, 389, 485, 571, 622, 656, 755, 809
Alw26I GTCTC 4 cut(s) 316, 319, 514, 780
AlwI GGATC 4 cut(s) 125, 166, 469, 818
ApeKI GCWGC 5 cut(s) 389, 482, 755, 758, 806
AsiGI ACCGGT 1 cut(s) 34
BauI CACGAG 1 cut(s) 587
BbsI GAAGAC 2 cut(s) 416, 1000
BbvI GCAGC 5 cut(s) 376, 494, 742, 745, 818
BciT130I CCWGG 1 cut(s) 479
BcoDI GTCTC 4 cut(s) 316, 319, 514, 780
BcuI ACTAGT 1 cut(s) 275
BfaI CTAG 3 cut(s) 276, 308, 372
BfmI CTRYAG 2 cut(s) 670, 759
BglI GCCNNNNNGGC 1 cut(s) 922
BisI GCNGC 5 cut(s) 390, 483, 756, 759, 807
BlsI GCNGC 5 cut(s) 391, 484, 757, 760, 808
Bme1390I CCNGG 1 cut(s) 479
BmrFI CCNGG 1 cut(s) 479
BmsI GCATC 3 cut(s) 110, 793, 863
BpiI GAAGAC 2 cut(s) 416, 1000
BpuEI CTTGAG 1 cut(s) 949
Bsa29I ATCGAT 1 cut(s) 822
BsaWI WCCGGW 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 4 cut(s) 55, 134, 322, 463
Bse3DI GCAATG 2 cut(s) 654, 735
BseBI CCWGG 1 cut(s) 479
BseCI ATCGAT 1 cut(s) 822
BseGI GGATG 3 cut(s) 125, 219, 873
BseMI GCAATG 2 cut(s) 654, 735
BseMII CTCAG 2 cut(s) 314, 671
BseNI ACTGG 4 cut(s) 55, 134, 322, 463
BseXI GCAGC 5 cut(s) 376, 494, 742, 745, 818
BsgI GTGCAG 1 cut(s) 12
Bsh1236I CGCG 1 cut(s) 530
Bsh1285I CGRYCG 1 cut(s) 83
BshTI ACCGGT 1 cut(s) 34
BshVI ATCGAT 1 cut(s) 822
BsiEI CGRYCG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 35
BsmAI GTCTC 4 cut(s) 316, 319, 514, 780
Bsp143I GATC 9 cut(s) 80, 130, 171, 433, 474, 583, 591, 763, 823
BspACI CCGC 2 cut(s) 175, 631
BspCNI CTCAG 2 cut(s) 315, 670
BspDI ATCGAT 1 cut(s) 822
BspFNI CGCG 1 cut(s) 530
BspHI TCATGA 1 cut(s) 42
BspMAI CTGCAG 1 cut(s) 763
BspPI GGATC 4 cut(s) 125, 166, 469, 818
BsrBI CCGCTC 1 cut(s) 631
BsrDI GCAATG 2 cut(s) 654, 735
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 4 cut(s) 55, 134, 322, 463
BssAI RCCGGY 1 cut(s) 34
BssMI GATC 9 cut(s) 80, 130, 171, 433, 474, 583, 591, 763, 823
BssSI CACGAG 1 cut(s) 587
Bst2BI CACGAG 1 cut(s) 587
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 2 cut(s) 127, 746
BstAPI GCANNNNNTGC 1 cut(s) 882
BstDEI CTNAG 3 cut(s) 323, 657, 960
BstF5I GGATG 3 cut(s) 125, 219, 873
BstFNI CGCG 1 cut(s) 530
BstKTI GATC 9 cut(s) 83, 133, 174, 436, 477, 586, 594, 766, 826
BstMAI GTCTC 4 cut(s) 316, 319, 514, 780
BstMBI GATC 9 cut(s) 80, 130, 171, 433, 474, 583, 591, 763, 823
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 7 cut(s) 97, 491, 628, 637, 653, 882, 922
BstNI CCWGG 1 cut(s) 479
BstSCI CCNGG 1 cut(s) 477
BstSFI CTRYAG 2 cut(s) 670, 759
BstUI CGCG 1 cut(s) 530
BstV1I GCAGC 5 cut(s) 376, 494, 742, 745, 818
BstV2I GAAGAC 2 cut(s) 416, 1000
BstX2I RGATCY 1 cut(s) 474
BstYI RGATCY 1 cut(s) 474
Bsu15I ATCGAT 1 cut(s) 822
BsuTUI ATCGAT 1 cut(s) 822
BtgZI GCGATG 1 cut(s) 511
BtsCI GGATG 3 cut(s) 125, 219, 873
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 4 cut(s) 24, 123, 366, 751
CciI TCATGA 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 34
ClaI ATCGAT 1 cut(s) 822
CseI GACGC 2 cut(s) 519, 988
Csp6I GTAC 1 cut(s) 682
CspAI ACCGGT 1 cut(s) 34
CviAII CATG 4 cut(s) 43, 109, 850, 918
CviQI GTAC 1 cut(s) 682
DdeI CTNAG 3 cut(s) 323, 657, 960
DpnI GATC 9 cut(s) 82, 132, 173, 435, 476, 585, 593, 765, 825
DpnII GATC 9 cut(s) 80, 130, 171, 433, 474, 583, 591, 763, 823
EciI GGCGGA 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 477
FaeI CATG 4 cut(s) 46, 112, 853, 921
FatI CATG 4 cut(s) 42, 108, 849, 917
Fnu4HI GCNGC 5 cut(s) 390, 483, 756, 759, 807
FokI GGATG 3 cut(s) 132, 206, 880
Fsp4HI GCNGC 5 cut(s) 390, 483, 756, 759, 807
FspBI CTAG 3 cut(s) 276, 308, 372
GluI GCNGC 5 cut(s) 390, 483, 756, 759, 807
HapII CCGG 1 cut(s) 35
HgaI GACGC 2 cut(s) 519, 988
Hin1II CATG 4 cut(s) 46, 112, 853, 921
HindIII AAGCTT 2 cut(s) 239, 569
HinfI GANTC 4 cut(s) 85, 304, 689, 856
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 5 cut(s) 104, 324, 429, 660, 864
Hpy188III TCNNGA 6 cut(s) 43, 284, 472, 575, 587, 1017
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 2 cut(s) 186, 770
HpyCH4III ACNGT 2 cut(s) 127, 746
HpyCH4IV ACGT 1 cut(s) 888
HpyCH4V TGCA 8 cut(s) 29, 61, 123, 761, 806, 876, 885, 978
HpyF10VI GCNNNNNNNGC 7 cut(s) 97, 491, 628, 637, 653, 882, 922
HpyF3I CTNAG 3 cut(s) 323, 657, 960
HpySE526I ACGT 1 cut(s) 888
Hsp92II CATG 4 cut(s) 46, 112, 853, 921
Kzo9I GATC 9 cut(s) 80, 130, 171, 433, 474, 583, 591, 763, 823
LmnI GCTCC 1 cut(s) 628
LpnPI CCDG 9 cut(s) 48, 68, 80, 147, 303, 464, 476, 491, 984
Lsp1109I GCAGC 5 cut(s) 376, 494, 742, 745, 818
LweI GCATC 3 cut(s) 110, 793, 863
MaeI CTAG 3 cut(s) 276, 308, 372
MaeII ACGT 1 cut(s) 888
MaeIII GTNAC 4 cut(s) 212, 361, 408, 732
MalI GATC 9 cut(s) 82, 132, 173, 435, 476, 585, 593, 765, 825
MbiI CCGCTC 1 cut(s) 631
MboI GATC 9 cut(s) 80, 130, 171, 433, 474, 583, 591, 763, 823
MboII GAAGA 5 cut(s) 299, 348, 416, 622, 1000
MflI RGATCY 1 cut(s) 474
MluCI AATT 3 cut(s) 262, 352, 661
MlyI GAGTC 1 cut(s) 698
MmeI TCCRAC 1 cut(s) 745
MnlI CCTC 5 cut(s) 107, 170, 182, 498, 858
MseI TTAA 3 cut(s) 5, 699, 707
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 479
MvaI CCWGG 1 cut(s) 479
MvnI CGCG 1 cut(s) 530
MwoI GCNNNNNNNGC 7 cut(s) 97, 491, 628, 637, 653, 882, 922
NdeII GATC 9 cut(s) 80, 130, 171, 433, 474, 583, 591, 763, 823
NlaIII CATG 4 cut(s) 46, 112, 853, 921
NmuCI GTSAC 3 cut(s) 361, 408, 732
PagI TCATGA 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 3 cut(s) 85, 304, 856
PinAI ACCGGT 1 cut(s) 34
PkrI GCNGC 5 cut(s) 391, 484, 757, 760, 808
Ple19I CGATCG 1 cut(s) 83
PleI GAGTC 1 cut(s) 697
PpsI GAGTC 1 cut(s) 697
PsiI TTATAA 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 477
PspGI CCWGG 1 cut(s) 477
PstI CTGCAG 1 cut(s) 763
PsuI RGATCY 1 cut(s) 474
PvuI CGATCG 1 cut(s) 83
RsaI GTAC 1 cut(s) 683
RsaNI GTAC 1 cut(s) 682
SaqAI TTAA 3 cut(s) 5, 699, 707
SatI GCNGC 5 cut(s) 390, 483, 756, 759, 807
Sau3AI GATC 9 cut(s) 80, 130, 171, 433, 474, 583, 591, 763, 823
SchI GAGTC 1 cut(s) 698
ScrFI CCNGG 1 cut(s) 479
SfaNI GCATC 3 cut(s) 110, 793, 863
SfcI CTRYAG 2 cut(s) 670, 759
SmlI CTYRAG 1 cut(s) 928
SmoI CTYRAG 1 cut(s) 928
SpeI ACTAGT 1 cut(s) 275
Sse9I AATT 3 cut(s) 262, 352, 661
SsiI CCGC 2 cut(s) 175, 631
SspMI CTAG 3 cut(s) 276, 308, 372
StyD4I CCNGG 1 cut(s) 477
TaaI ACNGT 2 cut(s) 127, 746
TaiI ACGT 1 cut(s) 891
TaqI TCGA 4 cut(s) 83, 283, 414, 822
TasI AATT 3 cut(s) 262, 352, 661
TatI WGTACW 1 cut(s) 681
TfiI GAWTC 3 cut(s) 85, 304, 856
Tru1I TTAA 3 cut(s) 5, 699, 707
Tru9I TTAA 3 cut(s) 5, 699, 707
TscAI CASTG 4 cut(s) 31, 130, 366, 751
TseFI GTSAC 3 cut(s) 361, 408, 732
TseI GCWGC 5 cut(s) 389, 482, 755, 758, 806
Tsp45I GTSAC 3 cut(s) 361, 408, 732
TspDTI ATGAA 8 cut(s) 31, 59, 360, 457, 527, 617, 801, 848
TspRI CASTG 4 cut(s) 31, 130, 366, 751
XspI CTAG 3 cut(s) 276, 308, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.